Magnesium in PDB 7oqh: Cryoem Structure of the Transcription Termination Factor Rho From Mycobacterium Tuberculosis
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Cryoem Structure of the Transcription Termination Factor Rho From Mycobacterium Tuberculosis
(pdb code 7oqh). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the
Cryoem Structure of the Transcription Termination Factor Rho From Mycobacterium Tuberculosis, PDB code: 7oqh:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
Magnesium binding site 1 out
of 5 in 7oqh
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Magnesium Binding Sites List in 7oqh
Magnesium binding site 1 out
of 5 in the Cryoem Structure of the Transcription Termination Factor Rho From Mycobacterium Tuberculosis
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryoem Structure of the Transcription Termination Factor Rho From Mycobacterium Tuberculosis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg702
b:31.0
occ:1.00
|
O2G
|
B:ATP701
|
2.0
|
37.5
|
1.0
|
O2B
|
B:ATP701
|
2.0
|
37.5
|
1.0
|
OG1
|
B:THR360
|
2.2
|
27.8
|
1.0
|
O3B
|
B:ATP701
|
3.1
|
37.5
|
1.0
|
PG
|
B:ATP701
|
3.1
|
37.5
|
1.0
|
PB
|
B:ATP701
|
3.2
|
37.5
|
1.0
|
CB
|
B:THR360
|
3.2
|
27.8
|
1.0
|
O3G
|
B:ATP701
|
4.0
|
37.5
|
1.0
|
O1A
|
B:ATP701
|
4.0
|
37.5
|
1.0
|
O3A
|
B:ATP701
|
4.1
|
37.5
|
1.0
|
N
|
B:THR360
|
4.1
|
27.8
|
1.0
|
CG2
|
B:THR360
|
4.2
|
27.8
|
1.0
|
OE1
|
B:GLU390
|
4.2
|
29.6
|
1.0
|
O1B
|
B:ATP701
|
4.3
|
37.5
|
1.0
|
CA
|
B:THR360
|
4.3
|
27.8
|
1.0
|
O1G
|
B:ATP701
|
4.3
|
37.5
|
1.0
|
PA
|
B:ATP701
|
4.6
|
37.5
|
1.0
|
CD
|
B:GLU390
|
4.9
|
29.6
|
1.0
|
OE2
|
B:GLU390
|
4.9
|
29.6
|
1.0
|
NH2
|
A:ARG541
|
4.9
|
37.6
|
1.0
|
|
Magnesium binding site 2 out
of 5 in 7oqh
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Magnesium Binding Sites List in 7oqh
Magnesium binding site 2 out
of 5 in the Cryoem Structure of the Transcription Termination Factor Rho From Mycobacterium Tuberculosis
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryoem Structure of the Transcription Termination Factor Rho From Mycobacterium Tuberculosis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg702
b:21.5
occ:1.00
|
O2B
|
C:ATP701
|
2.1
|
19.8
|
1.0
|
OG1
|
C:THR360
|
2.2
|
12.6
|
1.0
|
O2G
|
C:ATP701
|
2.4
|
19.8
|
1.0
|
PB
|
C:ATP701
|
3.4
|
19.8
|
1.0
|
CB
|
C:THR360
|
3.5
|
12.6
|
1.0
|
PG
|
C:ATP701
|
3.7
|
19.8
|
1.0
|
O3B
|
C:ATP701
|
3.7
|
19.8
|
1.0
|
O1B
|
C:ATP701
|
4.1
|
19.8
|
1.0
|
NH2
|
B:ARG541
|
4.3
|
19.2
|
1.0
|
CG2
|
C:THR360
|
4.3
|
12.6
|
1.0
|
N
|
C:THR360
|
4.3
|
12.6
|
1.0
|
CA
|
C:THR360
|
4.4
|
12.6
|
1.0
|
O3A
|
C:ATP701
|
4.5
|
19.8
|
1.0
|
OE1
|
C:GLU390
|
4.6
|
15.4
|
1.0
|
O1A
|
C:ATP701
|
4.6
|
19.8
|
1.0
|
O3G
|
C:ATP701
|
4.6
|
19.8
|
1.0
|
O1G
|
C:ATP701
|
4.7
|
19.8
|
1.0
|
OE1
|
C:GLU386
|
4.7
|
15.7
|
1.0
|
OE2
|
C:GLU390
|
4.7
|
15.4
|
1.0
|
CE
|
C:LYS359
|
4.8
|
11.2
|
1.0
|
CD
|
C:GLU390
|
4.9
|
15.4
|
1.0
|
|
Magnesium binding site 3 out
of 5 in 7oqh
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Magnesium Binding Sites List in 7oqh
Magnesium binding site 3 out
of 5 in the Cryoem Structure of the Transcription Termination Factor Rho From Mycobacterium Tuberculosis
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cryoem Structure of the Transcription Termination Factor Rho From Mycobacterium Tuberculosis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg702
b:22.6
occ:1.00
|
O2B
|
D:ATP701
|
2.0
|
17.2
|
1.0
|
O2G
|
D:ATP701
|
2.0
|
17.2
|
1.0
|
OG1
|
D:THR360
|
2.3
|
11.0
|
1.0
|
PB
|
D:ATP701
|
3.3
|
17.2
|
1.0
|
PG
|
D:ATP701
|
3.3
|
17.2
|
1.0
|
O3B
|
D:ATP701
|
3.5
|
17.2
|
1.0
|
CB
|
D:THR360
|
3.7
|
11.0
|
1.0
|
NH2
|
C:ARG541
|
4.0
|
14.2
|
1.0
|
O1B
|
D:ATP701
|
4.2
|
17.2
|
1.0
|
O3A
|
D:ATP701
|
4.3
|
17.2
|
1.0
|
O1G
|
D:ATP701
|
4.3
|
17.2
|
1.0
|
O3G
|
D:ATP701
|
4.3
|
17.2
|
1.0
|
CG2
|
D:THR360
|
4.3
|
11.0
|
1.0
|
N
|
D:THR360
|
4.5
|
11.0
|
1.0
|
OE1
|
D:GLU390
|
4.6
|
12.7
|
1.0
|
CA
|
D:THR360
|
4.7
|
11.0
|
1.0
|
OE2
|
D:GLU386
|
4.7
|
16.2
|
1.0
|
NH1
|
C:ARG541
|
4.8
|
14.2
|
1.0
|
CZ
|
C:ARG541
|
4.8
|
14.2
|
1.0
|
|
Magnesium binding site 4 out
of 5 in 7oqh
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Magnesium Binding Sites List in 7oqh
Magnesium binding site 4 out
of 5 in the Cryoem Structure of the Transcription Termination Factor Rho From Mycobacterium Tuberculosis
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cryoem Structure of the Transcription Termination Factor Rho From Mycobacterium Tuberculosis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg702
b:26.2
occ:1.00
|
O2B
|
E:ATP701
|
2.0
|
28.9
|
1.0
|
O2G
|
E:ATP701
|
2.1
|
28.9
|
1.0
|
OG1
|
E:THR360
|
2.1
|
19.4
|
1.0
|
PB
|
E:ATP701
|
3.3
|
28.9
|
1.0
|
PG
|
E:ATP701
|
3.4
|
28.9
|
1.0
|
CB
|
E:THR360
|
3.5
|
19.4
|
1.0
|
O3B
|
E:ATP701
|
3.5
|
28.9
|
1.0
|
NH2
|
D:ARG541
|
3.8
|
18.6
|
1.0
|
O3A
|
E:ATP701
|
4.1
|
28.9
|
1.0
|
O1G
|
E:ATP701
|
4.1
|
28.9
|
1.0
|
CG2
|
E:THR360
|
4.2
|
19.4
|
1.0
|
NZ
|
E:LYS359
|
4.3
|
18.0
|
1.0
|
O1B
|
E:ATP701
|
4.4
|
28.9
|
1.0
|
N
|
E:THR360
|
4.4
|
19.4
|
1.0
|
CE
|
E:LYS359
|
4.5
|
18.0
|
1.0
|
OE2
|
E:GLU386
|
4.5
|
15.7
|
1.0
|
CA
|
E:THR360
|
4.5
|
19.4
|
1.0
|
O3G
|
E:ATP701
|
4.5
|
28.9
|
1.0
|
OE2
|
E:GLU390
|
4.7
|
16.1
|
1.0
|
CZ
|
D:ARG541
|
4.9
|
18.6
|
1.0
|
|
Magnesium binding site 5 out
of 5 in 7oqh
Go back to
Magnesium Binding Sites List in 7oqh
Magnesium binding site 5 out
of 5 in the Cryoem Structure of the Transcription Termination Factor Rho From Mycobacterium Tuberculosis
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cryoem Structure of the Transcription Termination Factor Rho From Mycobacterium Tuberculosis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg702
b:43.2
occ:1.00
|
O2B
|
F:ATP701
|
2.0
|
49.2
|
1.0
|
O2G
|
F:ATP701
|
2.0
|
49.2
|
1.0
|
O3B
|
F:ATP701
|
2.2
|
49.2
|
1.0
|
OG1
|
F:THR360
|
2.6
|
37.0
|
1.0
|
PB
|
F:ATP701
|
2.6
|
49.2
|
1.0
|
PG
|
F:ATP701
|
2.7
|
49.2
|
1.0
|
O3A
|
F:ATP701
|
3.3
|
49.2
|
1.0
|
O3G
|
F:ATP701
|
3.5
|
49.2
|
1.0
|
CB
|
F:THR360
|
3.8
|
37.0
|
1.0
|
O1B
|
F:ATP701
|
3.9
|
49.2
|
1.0
|
O1G
|
F:ATP701
|
3.9
|
49.2
|
1.0
|
NZ
|
F:LYS359
|
4.4
|
36.2
|
1.0
|
N
|
F:THR360
|
4.6
|
37.0
|
1.0
|
CG2
|
F:THR360
|
4.6
|
37.0
|
1.0
|
NH2
|
E:ARG541
|
4.7
|
25.9
|
1.0
|
CA
|
F:THR360
|
4.8
|
37.0
|
1.0
|
PA
|
F:ATP701
|
4.9
|
49.2
|
1.0
|
OE2
|
F:GLU386
|
4.9
|
31.3
|
1.0
|
|
Reference:
E.Saridakis,
R.Vishwakarma,
J.Lai-Kee-Him,
K.Martin,
I.Simon,
M.Cohen-Gonsaud,
F.Coste,
P.Bron,
E.Margeat,
M.Boudvillain.
Cryo-Em Structure of Transcription Termination Factor Rho From Mycobacterium Tuberculosis Reveals Bicyclomycin Resistance Mechanism. Commun Biol V. 5 120 2022.
ISSN: ESSN 2399-3642
PubMed: 35140348
DOI: 10.1038/S42003-022-03069-6
Page generated: Thu Oct 3 03:30:04 2024
|