Magnesium in PDB 7oqh: Cryoem Structure of the Transcription Termination Factor Rho From Mycobacterium Tuberculosis

The binding sites of Magnesium atom in the Cryoem Structure of the Transcription Termination Factor Rho From Mycobacterium Tuberculosis (pdb code 7oqh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Cryoem Structure of the Transcription Termination Factor Rho From Mycobacterium Tuberculosis, PDB code: 7oqh:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Cryoem Structure of the Transcription Termination Factor Rho From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of the Transcription Termination Factor Rho From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg702 b:31.0 occ:1.00 O2G B:ATP701 2.0 37.5 1.0 O2B B:ATP701 2.0 37.5 1.0 OG1 B:THR360 2.2 27.8 1.0 O3B B:ATP701 3.1 37.5 1.0 PG B:ATP701 3.1 37.5 1.0 PB B:ATP701 3.2 37.5 1.0 CB B:THR360 3.2 27.8 1.0 O3G B:ATP701 4.0 37.5 1.0 O1A B:ATP701 4.0 37.5 1.0 O3A B:ATP701 4.1 37.5 1.0 N B:THR360 4.1 27.8 1.0 CG2 B:THR360 4.2 27.8 1.0 OE1 B:GLU390 4.2 29.6 1.0 O1B B:ATP701 4.3 37.5 1.0 CA B:THR360 4.3 27.8 1.0 O1G B:ATP701 4.3 37.5 1.0 PA B:ATP701 4.6 37.5 1.0 CD B:GLU390 4.9 29.6 1.0 OE2 B:GLU390 4.9 29.6 1.0 NH2 A:ARG541 4.9 37.6 1.0

Magnesium binding site 2 out of 5 in the Cryoem Structure of the Transcription Termination Factor Rho From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryoem Structure of the Transcription Termination Factor Rho From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg702 b:21.5 occ:1.00 O2B C:ATP701 2.1 19.8 1.0 OG1 C:THR360 2.2 12.6 1.0 O2G C:ATP701 2.4 19.8 1.0 PB C:ATP701 3.4 19.8 1.0 CB C:THR360 3.5 12.6 1.0 PG C:ATP701 3.7 19.8 1.0 O3B C:ATP701 3.7 19.8 1.0 O1B C:ATP701 4.1 19.8 1.0 NH2 B:ARG541 4.3 19.2 1.0 CG2 C:THR360 4.3 12.6 1.0 N C:THR360 4.3 12.6 1.0 CA C:THR360 4.4 12.6 1.0 O3A C:ATP701 4.5 19.8 1.0 OE1 C:GLU390 4.6 15.4 1.0 O1A C:ATP701 4.6 19.8 1.0 O3G C:ATP701 4.6 19.8 1.0 O1G C:ATP701 4.7 19.8 1.0 OE1 C:GLU386 4.7 15.7 1.0 OE2 C:GLU390 4.7 15.4 1.0 CE C:LYS359 4.8 11.2 1.0 CD C:GLU390 4.9 15.4 1.0

Magnesium binding site 3 out of 5 in the Cryoem Structure of the Transcription Termination Factor Rho From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryoem Structure of the Transcription Termination Factor Rho From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg702 b:22.6 occ:1.00 O2B D:ATP701 2.0 17.2 1.0 O2G D:ATP701 2.0 17.2 1.0 OG1 D:THR360 2.3 11.0 1.0 PB D:ATP701 3.3 17.2 1.0 PG D:ATP701 3.3 17.2 1.0 O3B D:ATP701 3.5 17.2 1.0 CB D:THR360 3.7 11.0 1.0 NH2 C:ARG541 4.0 14.2 1.0 O1B D:ATP701 4.2 17.2 1.0 O3A D:ATP701 4.3 17.2 1.0 O1G D:ATP701 4.3 17.2 1.0 O3G D:ATP701 4.3 17.2 1.0 CG2 D:THR360 4.3 11.0 1.0 N D:THR360 4.5 11.0 1.0 OE1 D:GLU390 4.6 12.7 1.0 CA D:THR360 4.7 11.0 1.0 OE2 D:GLU386 4.7 16.2 1.0 NH1 C:ARG541 4.8 14.2 1.0 CZ C:ARG541 4.8 14.2 1.0

Magnesium binding site 4 out of 5 in the Cryoem Structure of the Transcription Termination Factor Rho From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryoem Structure of the Transcription Termination Factor Rho From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg702 b:26.2 occ:1.00 O2B E:ATP701 2.0 28.9 1.0 O2G E:ATP701 2.1 28.9 1.0 OG1 E:THR360 2.1 19.4 1.0 PB E:ATP701 3.3 28.9 1.0 PG E:ATP701 3.4 28.9 1.0 CB E:THR360 3.5 19.4 1.0 O3B E:ATP701 3.5 28.9 1.0 NH2 D:ARG541 3.8 18.6 1.0 O3A E:ATP701 4.1 28.9 1.0 O1G E:ATP701 4.1 28.9 1.0 CG2 E:THR360 4.2 19.4 1.0 NZ E:LYS359 4.3 18.0 1.0 O1B E:ATP701 4.4 28.9 1.0 N E:THR360 4.4 19.4 1.0 CE E:LYS359 4.5 18.0 1.0 OE2 E:GLU386 4.5 15.7 1.0 CA E:THR360 4.5 19.4 1.0 O3G E:ATP701 4.5 28.9 1.0 OE2 E:GLU390 4.7 16.1 1.0 CZ D:ARG541 4.9 18.6 1.0

Magnesium binding site 5 out of 5 in the Cryoem Structure of the Transcription Termination Factor Rho From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryoem Structure of the Transcription Termination Factor Rho From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg702 b:43.2 occ:1.00 O2B F:ATP701 2.0 49.2 1.0 O2G F:ATP701 2.0 49.2 1.0 O3B F:ATP701 2.2 49.2 1.0 OG1 F:THR360 2.6 37.0 1.0 PB F:ATP701 2.6 49.2 1.0 PG F:ATP701 2.7 49.2 1.0 O3A F:ATP701 3.3 49.2 1.0 O3G F:ATP701 3.5 49.2 1.0 CB F:THR360 3.8 37.0 1.0 O1B F:ATP701 3.9 49.2 1.0 O1G F:ATP701 3.9 49.2 1.0 NZ F:LYS359 4.4 36.2 1.0 N F:THR360 4.6 37.0 1.0 CG2 F:THR360 4.6 37.0 1.0 NH2 E:ARG541 4.7 25.9 1.0 CA F:THR360 4.8 37.0 1.0 PA F:ATP701 4.9 49.2 1.0 OE2 F:GLU386 4.9 31.3 1.0

E.Saridakis, R.Vishwakarma, J.Lai-Kee-Him, K.Martin, I.Simon, M.Cohen-Gonsaud, F.Coste, P.Bron, E.Margeat, M.Boudvillain. Cryo-Em Structure of Transcription Termination Factor Rho From Mycobacterium Tuberculosis Reveals Bicyclomycin Resistance Mechanism. Commun Biol V. 5 120 2022.
ISSN: ESSN 2399-3642
PubMed: 35140348
DOI: 10.1038/S42003-022-03069-6