Magnesium in PDB 7p7y: X-Ray Structure of Lactobacillus Kefir Alcohol Dehydrogenase Mutant Q126K

Protein crystallography data

The structure of X-Ray Structure of Lactobacillus Kefir Alcohol Dehydrogenase Mutant Q126K, PDB code: 7p7y was solved by D.Bischoff, B.Walla, R.Janowski, D.Niessing, D.Weuster-Botz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.80 / 1.25
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 55.84, 80.04, 114.93, 90, 90, 90
R / Rfree (%) 10.1 / 11.8

Other elements in 7p7y:

The structure of X-Ray Structure of Lactobacillus Kefir Alcohol Dehydrogenase Mutant Q126K also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the X-Ray Structure of Lactobacillus Kefir Alcohol Dehydrogenase Mutant Q126K (pdb code 7p7y). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the X-Ray Structure of Lactobacillus Kefir Alcohol Dehydrogenase Mutant Q126K, PDB code: 7p7y:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7p7y

Go back to Magnesium Binding Sites List in 7p7y
Magnesium binding site 1 out of 2 in the X-Ray Structure of Lactobacillus Kefir Alcohol Dehydrogenase Mutant Q126K


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Structure of Lactobacillus Kefir Alcohol Dehydrogenase Mutant Q126K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg303

b:6.2
occ:0.50
O A:HOH410 2.1 10.1 0.5
O A:GLN251 2.1 7.2 1.0
O A:HOH438 2.1 8.6 1.0
O A:HOH433 2.1 7.3 0.5
C A:GLN251 3.1 6.3 1.0
OXT A:GLN251 3.4 6.5 1.0
O A:HOH719 4.3 8.0 0.5
O A:TYR248 4.3 6.2 1.0
O1 A:EDO302 4.4 9.0 0.5
CA A:GLN251 4.4 6.6 1.0
O A:THR249 4.7 9.9 1.0
CG1 A:VAL147 4.7 8.2 1.0
N A:GLN251 4.7 6.6 1.0
CG A:GLN251 4.9 7.2 1.0
O A:HOH447 4.9 8.8 1.0
C1 A:EDO302 5.0 11.0 0.5
C A:THR249 5.0 7.1 1.0

Magnesium binding site 2 out of 2 in 7p7y

Go back to Magnesium Binding Sites List in 7p7y
Magnesium binding site 2 out of 2 in the X-Ray Structure of Lactobacillus Kefir Alcohol Dehydrogenase Mutant Q126K


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of X-Ray Structure of Lactobacillus Kefir Alcohol Dehydrogenase Mutant Q126K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg304

b:15.6
occ:0.80
O A:HOH454 2.0 15.9 1.0
O A:HOH679 2.0 24.4 1.0
O A:HOH733 2.0 25.6 1.0
O A:HOH411 2.1 17.3 1.0
OD2 A:ASP100 4.1 11.0 1.0
OD1 A:ASP100 4.2 11.8 1.0
CG A:ASP100 4.6 9.2 1.0
OE1 A:GLU99 4.7 8.8 1.0

Reference:

D.Bischoff, B.Walla, R.Janowski, D.Niessing, D.Weuster-Botz. X-Ray Structure of Lactobacillus Kefir Alcohol Dehydrogenase (Wild Type) To Be Published.
Page generated: Sat Aug 21 16:47:41 2021

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