Magnesium in PDB 7pi0: Unstacked Compact Dunaliella Psii

All present enzymatic activity of Unstacked Compact Dunaliella Psii:
1.10.3.9;

The structure of Unstacked Compact Dunaliella Psii also contains other interesting chemical elements:

Calcium	(Ca)	2 atoms
Iron	(Fe)	4 atoms
Manganese	(Mn)	8 atoms
Sodium	(Na)	2 atoms
Chlorine	(Cl)	4 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 160; Page 17, Binding sites: 161 - 170; Page 18, Binding sites: 171 - 180; Page 19, Binding sites: 181 - 190; Page 20, Binding sites: 191 - 200; Page 21, Binding sites: 201 - 202;

Binding sites:

The binding sites of Magnesium atom in the Unstacked Compact Dunaliella Psii (pdb code 7pi0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 202 binding sites of Magnesium where determined in the Unstacked Compact Dunaliella Psii, PDB code: 7pi0:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 202 in the Unstacked Compact Dunaliella Psii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Unstacked Compact Dunaliella Psii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg405 b:39.7 occ:1.00 MG A:CLA405 0.0 39.7 1.0 NB A:CLA405 2.0 39.7 1.0 ND A:CLA405 2.0 39.7 1.0 NC A:CLA405 2.1 39.7 1.0 NA A:CLA405 2.1 39.7 1.0 C4D A:CLA405 2.9 39.7 1.0 C4B A:CLA405 3.0 39.7 1.0 C1B A:CLA405 3.0 39.7 1.0 C1C A:CLA405 3.0 39.7 1.0 C4A A:CLA405 3.1 39.7 1.0 CE1 A:HIS198 3.1 30.4 1.0 C4C A:CLA405 3.1 39.7 1.0 C1A A:CLA405 3.1 39.7 1.0 C1D A:CLA405 3.1 39.7 1.0 CHC A:CLA405 3.4 39.7 1.0 CHB A:CLA405 3.4 39.7 1.0 CHA A:CLA405 3.5 39.7 1.0 CHD A:CLA405 3.5 39.7 1.0 CE A:MET183 3.5 28.5 1.0 CAB D:CLA402 3.7 30.8 1.0 NE2 A:HIS198 3.9 30.4 1.0 ND1 A:HIS198 4.1 30.4 1.0 C3D A:CLA405 4.2 39.7 1.0 CBB D:CLA402 4.2 30.8 1.0 C3B A:CLA405 4.3 39.7 1.0 C2C A:CLA405 4.3 39.7 1.0 C2B A:CLA405 4.3 39.7 1.0 C2D A:CLA405 4.3 39.7 1.0 C3C A:CLA405 4.3 39.7 1.0 C3A A:CLA405 4.4 39.7 1.0 C2A A:CLA405 4.4 39.7 1.0 C3B D:CLA402 4.8 30.8 1.0 CBD A:CLA405 4.9 39.7 1.0 CHC D:CLA402 4.9 30.8 1.0

Magnesium binding site 2 out of 202 in the Unstacked Compact Dunaliella Psii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Unstacked Compact Dunaliella Psii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg406 b:39.7 occ:1.00 MG A:CLA406 0.0 39.7 1.0 NB A:CLA406 2.0 39.7 1.0 ND A:CLA406 2.0 39.7 1.0 NC A:CLA406 2.1 39.7 1.0 NA A:CLA406 2.1 39.7 1.0 C4D A:CLA406 2.9 39.7 1.0 O A:HOH1007 3.0 30.0 1.0 C1B A:CLA406 3.0 39.7 1.0 C4B A:CLA406 3.0 39.7 1.0 C1C A:CLA406 3.1 39.7 1.0 C4A A:CLA406 3.1 39.7 1.0 C4C A:CLA406 3.1 39.7 1.0 C1A A:CLA406 3.1 39.7 1.0 C1D A:CLA406 3.2 39.7 1.0 CHB A:CLA406 3.4 39.7 1.0 CHC A:CLA406 3.4 39.7 1.0 CHA A:CLA406 3.5 39.7 1.0 CHD A:CLA406 3.5 39.7 1.0 CBB A:PHO408 3.7 39.7 1.0 O1A A:CLA406 4.0 39.7 1.0 C3D A:CLA406 4.2 39.7 1.0 C2B A:CLA406 4.3 39.7 1.0 C3B A:CLA406 4.3 39.7 1.0 C2C A:CLA406 4.3 39.7 1.0 C2D A:CLA406 4.3 39.7 1.0 O A:HOH1002 4.3 27.0 1.0 C3C A:CLA406 4.3 39.7 1.0 C3A A:CLA406 4.4 39.7 1.0 C2A A:CLA406 4.4 39.7 1.0 CG2 A:THR179 4.7 26.7 1.0 CGA A:CLA406 4.8 39.7 1.0 CBD A:CLA406 4.9 39.7 1.0 CAB A:PHO408 4.9 39.7 1.0

Magnesium binding site 3 out of 202 in the Unstacked Compact Dunaliella Psii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Unstacked Compact Dunaliella Psii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg407 b:33.2 occ:1.00 MG A:CLA407 0.0 33.2 1.0 NB A:CLA407 2.0 33.2 1.0 ND A:CLA407 2.0 33.2 1.0 NC A:CLA407 2.1 33.2 1.0 NA A:CLA407 2.1 33.2 1.0 C4D A:CLA407 2.9 33.2 1.0 C1B A:CLA407 3.0 33.2 1.0 O D:HOH1006 3.0 31.6 1.0 C4B A:CLA407 3.0 33.2 1.0 C4A A:CLA407 3.0 33.2 1.0 C1C A:CLA407 3.1 33.2 1.0 C4C A:CLA407 3.1 33.2 1.0 C1A A:CLA407 3.1 33.2 1.0 C1D A:CLA407 3.1 33.2 1.0 CHB A:CLA407 3.4 33.2 1.0 CHC A:CLA407 3.4 33.2 1.0 CHA A:CLA407 3.5 33.2 1.0 CHD A:CLA407 3.5 33.2 1.0 CBB A:PHO409 3.7 32.4 1.0 O1A A:CLA407 4.0 33.2 1.0 C3D A:CLA407 4.2 33.2 1.0 C3B A:CLA407 4.3 33.2 1.0 C2B A:CLA407 4.3 33.2 1.0 C2D A:CLA407 4.3 33.2 1.0 C2C A:CLA407 4.3 33.2 1.0 O D:HOH1003 4.3 30.9 1.0 C3C A:CLA407 4.3 33.2 1.0 C3A A:CLA407 4.4 33.2 1.0 C2A A:CLA407 4.5 33.2 1.0 CE2 A:PHE206 4.6 27.4 1.0 CG2 D:ILE178 4.7 29.4 1.0 CBD A:CLA407 4.9 33.2 1.0 CD2 A:PHE206 4.9 27.4 1.0

Magnesium binding site 4 out of 202 in the Unstacked Compact Dunaliella Psii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Unstacked Compact Dunaliella Psii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg410 b:25.9 occ:1.00 MG A:CLA410 0.0 25.9 1.0 NB A:CLA410 2.0 25.9 1.0 ND A:CLA410 2.0 25.9 1.0 NC A:CLA410 2.1 25.9 1.0 NA A:CLA410 2.1 25.9 1.0 C4D A:CLA410 2.9 25.9 1.0 NE2 A:HIS118 2.9 21.8 1.0 C4B A:CLA410 3.0 25.9 1.0 C1B A:CLA410 3.0 25.9 1.0 C4A A:CLA410 3.0 25.9 1.0 C1C A:CLA410 3.1 25.9 1.0 C4C A:CLA410 3.1 25.9 1.0 C1D A:CLA410 3.1 25.9 1.0 C1A A:CLA410 3.1 25.9 1.0 CHB A:CLA410 3.4 25.9 1.0 CHC A:CLA410 3.4 25.9 1.0 CHA A:CLA410 3.5 25.9 1.0 CHD A:CLA410 3.5 25.9 1.0 CE1 A:HIS118 3.8 21.8 1.0 CG2 I:VAL12 3.8 22.9 1.0 CD2 A:HIS118 3.9 21.8 1.0 CG1 I:VAL8 4.0 23.4 1.0 C3B A:CLA410 4.2 25.9 1.0 C3D A:CLA410 4.2 25.9 1.0 C2B A:CLA410 4.3 25.9 1.0 C2D A:CLA410 4.3 25.9 1.0 C2C A:CLA410 4.3 25.9 1.0 C3C A:CLA410 4.3 25.9 1.0 C3A A:CLA410 4.4 25.9 1.0 C2A A:CLA410 4.5 25.9 1.0 CBA A:CLA410 4.8 25.9 1.0 CBD A:CLA410 4.9 25.9 1.0 ND1 A:HIS118 4.9 21.8 1.0

Magnesium binding site 5 out of 202 in the Unstacked Compact Dunaliella Psii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Unstacked Compact Dunaliella Psii within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:39.5 occ:1.00 MG B:CLA602 0.0 39.5 1.0 NB B:CLA602 2.0 39.5 1.0 ND B:CLA602 2.0 39.5 1.0 NC B:CLA602 2.1 39.5 1.0 NA B:CLA602 2.1 39.5 1.0 C4D B:CLA602 2.9 39.5 1.0 C1B B:CLA602 3.0 39.5 1.0 C4B B:CLA602 3.0 39.5 1.0 C4A B:CLA602 3.0 39.5 1.0 C1C B:CLA602 3.1 39.5 1.0 O B:HOH1041 3.1 37.8 1.0 C4C B:CLA602 3.1 39.5 1.0 C1D B:CLA602 3.1 39.5 1.0 C1A B:CLA602 3.1 39.5 1.0 CHB B:CLA602 3.4 39.5 1.0 CHC B:CLA602 3.4 39.5 1.0 CHA B:CLA602 3.5 39.5 1.0 CHD B:CLA602 3.5 39.5 1.0 C15 B:CLA602 3.5 39.5 1.0 C16 B:CLA602 3.7 39.5 1.0 C12 B:CLA602 3.9 39.5 1.0 C13 B:CLA602 4.1 39.5 1.0 O B:TRP185 4.2 35.1 1.0 C3D B:CLA602 4.2 39.5 1.0 C2B B:CLA602 4.3 39.5 1.0 C3B B:CLA602 4.3 39.5 1.0 C2D B:CLA602 4.3 39.5 1.0 C2C B:CLA602 4.3 39.5 1.0 C3C B:CLA602 4.3 39.5 1.0 C3A B:CLA602 4.4 39.5 1.0 C2A B:CLA602 4.4 39.5 1.0 CE2 B:PHE190 4.5 35.9 1.0 C11 B:CLA602 4.9 39.5 1.0 CZ B:PHE190 4.9 35.9 1.0 CBD B:CLA602 4.9 39.5 1.0

Magnesium binding site 6 out of 202 in the Unstacked Compact Dunaliella Psii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Unstacked Compact Dunaliella Psii within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg603 b:31.9 occ:1.00 MG B:CLA603 0.0 31.9 1.0 NB B:CLA603 2.0 31.9 1.0 ND B:CLA603 2.0 31.9 1.0 NC B:CLA603 2.1 31.9 1.0 NA B:CLA603 2.1 31.9 1.0 C4D B:CLA603 2.9 31.9 1.0 ND1 B:HIS201 3.0 28.4 1.0 C1B B:CLA603 3.0 31.9 1.0 C4B B:CLA603 3.0 31.9 1.0 C4A B:CLA603 3.0 31.9 1.0 C1C B:CLA603 3.1 31.9 1.0 C4C B:CLA603 3.1 31.9 1.0 C1D B:CLA603 3.1 31.9 1.0 C1A B:CLA603 3.1 31.9 1.0 CHB B:CLA603 3.4 31.9 1.0 CHC B:CLA603 3.4 31.9 1.0 CZ H:PHE60 3.4 33.7 1.0 CHA B:CLA603 3.5 31.9 1.0 CHD B:CLA603 3.5 31.9 1.0 CE1 B:HIS201 3.9 28.4 1.0 CG B:HIS201 3.9 28.4 1.0 CB B:HIS201 4.1 28.4 1.0 CE2 H:PHE60 4.2 33.7 1.0 C3D B:CLA603 4.2 31.9 1.0 C3B B:CLA603 4.3 31.9 1.0 C2B B:CLA603 4.3 31.9 1.0 C2D B:CLA603 4.3 31.9 1.0 C2C B:CLA603 4.3 31.9 1.0 C3C B:CLA603 4.3 31.9 1.0 CE1 H:PHE60 4.3 33.7 1.0 CE1 B:PHE190 4.4 35.9 1.0 C3A B:CLA603 4.4 31.9 1.0 C2A B:CLA603 4.4 31.9 1.0 CA B:HIS201 4.6 28.4 1.0 CD1 B:PHE190 4.9 35.9 1.0 CBD B:CLA603 4.9 31.9 1.0 NE2 B:HIS201 5.0 28.4 1.0 CD2 B:HIS201 5.0 28.4 1.0

Magnesium binding site 7 out of 202 in the Unstacked Compact Dunaliella Psii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Unstacked Compact Dunaliella Psii within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg604 b:37.3 occ:1.00 MG B:CLA604 0.0 37.3 1.0 NB B:CLA604 2.0 37.3 1.0 ND B:CLA604 2.0 37.3 1.0 NC B:CLA604 2.1 37.3 1.0 NA B:CLA604 2.1 37.3 1.0 C4D B:CLA604 2.9 37.3 1.0 NE2 B:HIS202 2.9 28.6 1.0 C1B B:CLA604 3.0 37.3 1.0 C4B B:CLA604 3.0 37.3 1.0 C1C B:CLA604 3.0 37.3 1.0 C4A B:CLA604 3.1 37.3 1.0 C4C B:CLA604 3.1 37.3 1.0 C1D B:CLA604 3.1 37.3 1.0 C1A B:CLA604 3.1 37.3 1.0 CHB B:CLA604 3.4 37.3 1.0 CHC B:CLA604 3.4 37.3 1.0 CHA B:CLA604 3.5 37.3 1.0 CHD B:CLA604 3.5 37.3 1.0 C6 B:CLA606 3.5 39.7 1.0 CD2 B:HIS202 3.8 28.6 1.0 C9 B:CLA606 3.8 39.7 1.0 CE1 B:HIS202 3.9 28.6 1.0 C7 B:CLA606 4.1 39.7 1.0 C3D B:CLA604 4.2 37.3 1.0 C2B B:CLA604 4.3 37.3 1.0 C2D B:CLA604 4.3 37.3 1.0 C3B B:CLA604 4.3 37.3 1.0 C2C B:CLA604 4.3 37.3 1.0 C3C B:CLA604 4.3 37.3 1.0 C3A B:CLA604 4.4 37.3 1.0 C2A B:CLA604 4.4 37.3 1.0 C4 B:CLA606 4.6 39.7 1.0 C8 B:CLA606 4.6 39.7 1.0 O2A B:CLA604 4.7 37.3 1.0 CBA B:CLA604 4.7 37.3 1.0 NE2 B:HIS201 4.7 28.4 1.0 C5 B:CLA606 4.8 39.7 1.0 CBD B:CLA604 4.9 37.3 1.0 CG B:HIS202 4.9 28.6 1.0

Magnesium binding site 8 out of 202 in the Unstacked Compact Dunaliella Psii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Unstacked Compact Dunaliella Psii within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg605 b:39.7 occ:1.00 MG B:CLA605 0.0 39.7 1.0 ND B:CLA605 2.0 39.7 1.0 NB B:CLA605 2.0 39.7 1.0 NC B:CLA605 2.1 39.7 1.0 NA B:CLA605 2.1 39.7 1.0 C4D B:CLA605 2.9 39.7 1.0 NE2 B:HIS455 2.9 26.3 1.0 C1B B:CLA605 3.0 39.7 1.0 C4B B:CLA605 3.0 39.7 1.0 C4A B:CLA605 3.0 39.7 1.0 C1C B:CLA605 3.0 39.7 1.0 C4C B:CLA605 3.1 39.7 1.0 C1D B:CLA605 3.1 39.7 1.0 C1A B:CLA605 3.2 39.7 1.0 CHB B:CLA605 3.4 39.7 1.0 CHC B:CLA605 3.4 39.7 1.0 C14 B:CLA613 3.4 39.7 1.0 CHA B:CLA605 3.5 39.7 1.0 CHD B:CLA605 3.5 39.7 1.0 CE1 B:HIS455 3.6 26.3 1.0 CD2 B:HIS455 3.9 26.3 1.0 C13 B:CLA613 4.1 39.7 1.0 C3D B:CLA605 4.2 39.7 1.0 C15 B:CLA613 4.2 39.7 1.0 C2B B:CLA605 4.3 39.7 1.0 C3B B:CLA605 4.3 39.7 1.0 C2D B:CLA605 4.3 39.7 1.0 C2C B:CLA605 4.3 39.7 1.0 C3C B:CLA605 4.3 39.7 1.0 C3A B:CLA605 4.4 39.7 1.0 C2A B:CLA605 4.5 39.7 1.0 CAB B:CLA614 4.7 39.7 1.0 ND1 B:HIS455 4.7 26.3 1.0 CG B:HIS455 4.9 26.3 1.0 CBB B:CLA614 4.9 39.7 1.0 CBD B:CLA605 4.9 39.7 1.0

Magnesium binding site 9 out of 202 in the Unstacked Compact Dunaliella Psii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Unstacked Compact Dunaliella Psii within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg606 b:39.7 occ:1.00 MG B:CLA606 0.0 39.7 1.0 NB B:CLA606 2.0 39.7 1.0 ND B:CLA606 2.0 39.7 1.0 NC B:CLA606 2.1 39.7 1.0 NA B:CLA606 2.1 39.7 1.0 C4D B:CLA606 2.9 39.7 1.0 NE2 B:HIS100 3.0 21.6 1.0 C4B B:CLA606 3.0 39.7 1.0 C1B B:CLA606 3.0 39.7 1.0 C1C B:CLA606 3.0 39.7 1.0 C4A B:CLA606 3.0 39.7 1.0 C4C B:CLA606 3.1 39.7 1.0 C1D B:CLA606 3.1 39.7 1.0 C1A B:CLA606 3.1 39.7 1.0 CHB B:CLA606 3.4 39.7 1.0 CHC B:CLA606 3.4 39.7 1.0 CHA B:CLA606 3.5 39.7 1.0 C4 B:CLA605 3.5 39.7 1.0 CHD B:CLA606 3.5 39.7 1.0 C1 B:CLA605 3.8 39.7 1.0 C3 B:CLA605 3.8 39.7 1.0 CD2 B:HIS100 3.8 21.6 1.0 C2 B:CLA605 3.9 39.7 1.0 CE1 B:HIS100 4.0 21.6 1.0 C3D B:CLA606 4.2 39.7 1.0 C3B B:CLA606 4.3 39.7 1.0 C2B B:CLA606 4.3 39.7 1.0 C2D B:CLA606 4.3 39.7 1.0 C2C B:CLA606 4.3 39.7 1.0 C3C B:CLA606 4.3 39.7 1.0 C3A B:CLA606 4.4 39.7 1.0 C2A B:CLA606 4.5 39.7 1.0 C5 B:CLA605 4.7 39.7 1.0 O2A B:CLA605 4.8 39.7 1.0 CBA B:CLA606 4.8 39.7 1.0 CBD B:CLA606 4.9 39.7 1.0 C6 B:CLA605 5.0 39.7 1.0

Magnesium binding site 10 out of 202 in the Unstacked Compact Dunaliella Psii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Unstacked Compact Dunaliella Psii within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg607 b:35.4 occ:1.00 MG B:CLA607 0.0 35.4 1.0 NB B:CLA607 2.0 35.4 1.0 ND B:CLA607 2.0 35.4 1.0 NC B:CLA607 2.1 35.4 1.0 NA B:CLA607 2.1 35.4 1.0 C4D B:CLA607 2.9 35.4 1.0 ND1 B:HIS157 3.0 30.1 1.0 C1B B:CLA607 3.0 35.4 1.0 C4B B:CLA607 3.0 35.4 1.0 C4A B:CLA607 3.0 35.4 1.0 C1C B:CLA607 3.1 35.4 1.0 C4C B:CLA607 3.1 35.4 1.0 C1D B:CLA607 3.1 35.4 1.0 C1A B:CLA607 3.2 35.4 1.0 CHB B:CLA607 3.4 35.4 1.0 C3B B:DGD623 3.4 43.8 1.0 CHC B:CLA607 3.4 35.4 1.0 CHA B:CLA607 3.5 35.4 1.0 CHD B:CLA607 3.5 35.4 1.0 CE1 B:HIS157 3.6 30.1 1.0 O1B B:DGD623 3.7 43.8 1.0 C2B B:DGD623 3.9 43.8 1.0 C1B B:DGD623 4.0 43.8 1.0 CG B:HIS157 4.1 30.1 1.0 C3D B:CLA607 4.2 35.4 1.0 C3B B:CLA607 4.3 35.4 1.0 C2B B:CLA607 4.3 35.4 1.0 C2D B:CLA607 4.3 35.4 1.0 C3C B:CLA607 4.3 35.4 1.0 C2C B:CLA607 4.3 35.4 1.0 C3A B:CLA607 4.4 35.4 1.0 C2A B:CLA607 4.5 35.4 1.0 CB B:HIS157 4.5 30.1 1.0 C4B B:DGD623 4.6 43.8 1.0 O1A B:CLA607 4.7 35.4 1.0 NE2 B:HIS157 4.8 30.1 1.0 C5B B:DGD623 4.9 43.8 1.0 O2G B:DGD623 4.9 43.8 1.0 CBD B:CLA607 4.9 35.4 1.0 CBA B:CLA607 5.0 35.4 1.0

I.Caspy, M.Fadeeva, Y.Mazor, M.Nelson. Structure of Dunaliella Photosystem II Reveals Conformational Flexibility of Stacked and Unstacked Supercomplexes To Be Published.