Magnesium in PDB 7plh: Scytonema Hofmannii Tnsc Bound to Amppnp and Dna

The binding sites of Magnesium atom in the Scytonema Hofmannii Tnsc Bound to Amppnp and Dna (pdb code 7plh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the Scytonema Hofmannii Tnsc Bound to Amppnp and Dna, PDB code: 7plh:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in the Scytonema Hofmannii Tnsc Bound to Amppnp and Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Scytonema Hofmannii Tnsc Bound to Amppnp and Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:39.5 occ:1.00 O1B A:ANP301 1.9 40.6 1.0 N3B A:ANP301 2.0 40.6 1.0 O2G A:ANP301 2.2 40.6 1.0 PG A:ANP301 2.3 40.6 1.0 PB A:ANP301 2.4 40.6 1.0 OG1 A:THR67 2.6 27.2 1.0 O1G A:ANP301 2.7 40.6 1.0 O2A A:ANP301 3.1 40.6 1.0 O2B A:ANP301 3.3 40.6 1.0 CB A:THR67 3.5 27.2 1.0 O3A A:ANP301 3.6 40.6 1.0 O3G A:ANP301 3.8 40.6 1.0 PA A:ANP301 3.9 40.6 1.0 N A:THR67 4.1 27.2 1.0 O1A A:ANP301 4.4 40.6 1.0 CA A:THR67 4.4 27.2 1.0 NH2 B:ARG189 4.5 30.2 1.0 CG2 A:THR67 4.6 27.2 1.0 OD2 A:ASP144 4.7 25.3 1.0 CE A:LYS66 4.8 29.0 1.0 OD1 A:ASP144 5.0 25.3 1.0

Magnesium binding site 2 out of 7 in the Scytonema Hofmannii Tnsc Bound to Amppnp and Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Scytonema Hofmannii Tnsc Bound to Amppnp and Dna within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg302 b:39.5 occ:1.00 O1B B:ANP301 1.9 40.6 1.0 N3B B:ANP301 2.0 40.6 1.0 O2G B:ANP301 2.2 40.6 1.0 PG B:ANP301 2.3 40.6 1.0 PB B:ANP301 2.4 40.6 1.0 OG1 B:THR67 2.6 27.2 1.0 O1G B:ANP301 2.7 40.6 1.0 O2A B:ANP301 3.1 40.6 1.0 O2B B:ANP301 3.3 40.6 1.0 CB B:THR67 3.5 27.2 1.0 O3A B:ANP301 3.6 40.6 1.0 O3G B:ANP301 3.8 40.6 1.0 PA B:ANP301 3.9 40.6 1.0 N B:THR67 4.1 27.2 1.0 O1A B:ANP301 4.4 40.6 1.0 CA B:THR67 4.4 27.2 1.0 NH2 C:ARG189 4.5 30.2 1.0 CG2 B:THR67 4.6 27.2 1.0 OD2 B:ASP144 4.7 25.3 1.0 CE B:LYS66 4.8 29.0 1.0 OD1 B:ASP144 5.0 25.3 1.0

Magnesium binding site 3 out of 7 in the Scytonema Hofmannii Tnsc Bound to Amppnp and Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Scytonema Hofmannii Tnsc Bound to Amppnp and Dna within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg302 b:39.5 occ:1.00 O1B C:ANP301 1.9 40.6 1.0 N3B C:ANP301 2.0 40.6 1.0 O2G C:ANP301 2.2 40.6 1.0 PG C:ANP301 2.3 40.6 1.0 PB C:ANP301 2.4 40.6 1.0 OG1 C:THR67 2.6 27.2 1.0 O1G C:ANP301 2.7 40.6 1.0 O2A C:ANP301 3.1 40.6 1.0 O2B C:ANP301 3.3 40.6 1.0 CB C:THR67 3.5 27.2 1.0 O3A C:ANP301 3.6 40.6 1.0 O3G C:ANP301 3.8 40.6 1.0 PA C:ANP301 3.9 40.6 1.0 N C:THR67 4.1 27.2 1.0 NH2 D:ARG189 4.1 30.2 1.0 O1A C:ANP301 4.4 40.6 1.0 CA C:THR67 4.4 27.2 1.0 CG2 C:THR67 4.6 27.2 1.0 OD2 C:ASP144 4.7 25.3 1.0 CE C:LYS66 4.8 29.0 1.0 OD1 C:ASP144 5.0 25.3 1.0

Magnesium binding site 4 out of 7 in the Scytonema Hofmannii Tnsc Bound to Amppnp and Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Scytonema Hofmannii Tnsc Bound to Amppnp and Dna within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg302 b:39.5 occ:1.00 O1B D:ANP301 1.9 40.6 1.0 N3B D:ANP301 2.0 40.6 1.0 O2G D:ANP301 2.2 40.6 1.0 PG D:ANP301 2.3 40.6 1.0 PB D:ANP301 2.4 40.6 1.0 OG1 D:THR67 2.6 27.2 1.0 O1G D:ANP301 2.7 40.6 1.0 O2A D:ANP301 3.1 40.6 1.0 O2B D:ANP301 3.3 40.6 1.0 CB D:THR67 3.5 27.2 1.0 O3A D:ANP301 3.6 40.6 1.0 O3G D:ANP301 3.8 40.6 1.0 PA D:ANP301 3.9 40.6 1.0 N D:THR67 4.1 27.2 1.0 O1A D:ANP301 4.4 40.6 1.0 CA D:THR67 4.4 27.2 1.0 CG2 D:THR67 4.6 27.2 1.0 NH2 E:ARG189 4.7 30.2 1.0 OD2 D:ASP144 4.7 25.3 1.0 CE D:LYS66 4.8 29.0 1.0 OD1 D:ASP144 5.0 25.3 1.0

Magnesium binding site 5 out of 7 in the Scytonema Hofmannii Tnsc Bound to Amppnp and Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Scytonema Hofmannii Tnsc Bound to Amppnp and Dna within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg302 b:39.5 occ:1.00 O1B E:ANP301 1.9 40.6 1.0 N3B E:ANP301 2.0 40.6 1.0 O2G E:ANP301 2.2 40.6 1.0 PG E:ANP301 2.3 40.6 1.0 PB E:ANP301 2.4 40.6 1.0 OG1 E:THR67 2.6 27.2 1.0 O1G E:ANP301 2.7 40.6 1.0 O2A E:ANP301 3.1 40.6 1.0 O2B E:ANP301 3.3 40.6 1.0 CB E:THR67 3.5 27.2 1.0 O3A E:ANP301 3.6 40.6 1.0 O3G E:ANP301 3.8 40.6 1.0 PA E:ANP301 3.9 40.6 1.0 NH2 F:ARG189 4.1 30.2 1.0 N E:THR67 4.1 27.2 1.0 O1A E:ANP301 4.4 40.6 1.0 CA E:THR67 4.4 27.2 1.0 CG2 E:THR67 4.6 27.2 1.0 OD2 E:ASP144 4.7 25.3 1.0 CE E:LYS66 4.8 29.0 1.0 OD1 E:ASP144 5.0 25.3 1.0

Magnesium binding site 6 out of 7 in the Scytonema Hofmannii Tnsc Bound to Amppnp and Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Scytonema Hofmannii Tnsc Bound to Amppnp and Dna within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg302 b:39.5 occ:1.00 O1B F:ANP301 1.9 40.6 1.0 N3B F:ANP301 2.0 40.6 1.0 O2G F:ANP301 2.2 40.6 1.0 PG F:ANP301 2.3 40.6 1.0 PB F:ANP301 2.4 40.6 1.0 OG1 F:THR67 2.6 27.2 1.0 O1G F:ANP301 2.7 40.6 1.0 O2A F:ANP301 3.1 40.6 1.0 O2B F:ANP301 3.3 40.6 1.0 CB F:THR67 3.5 27.2 1.0 O3A F:ANP301 3.6 40.6 1.0 O3G F:ANP301 3.8 40.6 1.0 PA F:ANP301 3.9 40.6 1.0 N F:THR67 4.1 27.2 1.0 NH2 G:ARG189 4.4 30.2 1.0 O1A F:ANP301 4.4 40.6 1.0 CA F:THR67 4.4 27.2 1.0 CG2 F:THR67 4.6 27.2 1.0 OD2 F:ASP144 4.7 25.3 1.0 CE F:LYS66 4.8 29.0 1.0 OD1 F:ASP144 5.0 25.3 1.0

Magnesium binding site 7 out of 7 in the Scytonema Hofmannii Tnsc Bound to Amppnp and Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Scytonema Hofmannii Tnsc Bound to Amppnp and Dna within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg302 b:39.5 occ:1.00 O1B G:ANP301 1.9 40.6 1.0 N3B G:ANP301 2.0 40.6 1.0 O2G G:ANP301 2.2 40.6 1.0 PG G:ANP301 2.3 40.6 1.0 PB G:ANP301 2.4 40.6 1.0 OG1 G:THR67 2.6 27.2 1.0 O1G G:ANP301 2.7 40.6 1.0 O2A G:ANP301 3.1 40.6 1.0 O2B G:ANP301 3.3 40.6 1.0 CB G:THR67 3.5 27.2 1.0 O3A G:ANP301 3.6 40.6 1.0 O3G G:ANP301 3.8 40.6 1.0 PA G:ANP301 3.9 40.6 1.0 N G:THR67 4.1 27.2 1.0 O1A G:ANP301 4.4 40.6 1.0 CA G:THR67 4.4 27.2 1.0 CG2 G:THR67 4.6 27.2 1.0 OD2 G:ASP144 4.7 25.3 1.0 CE G:LYS66 4.8 29.0 1.0 OD1 G:ASP144 5.0 25.3 1.0

I.Querques, M.Schmitz, S.Oberli, C.Chanez, M.Jinek. Target Site Selection and Remodelling By Type V Crispr-Transposon Systems. Nature V. 599 497 2021.
ISSN: ESSN 1476-4687
PubMed: 34759315
DOI: 10.1038/S41586-021-04030-Z