Magnesium in PDB 7plu: Cryo-Em Structure of the Actomyosin-V Complex in the Rigor State (Central 3ER/2ER)

The binding sites of Magnesium atom in the Cryo-Em Structure of the Actomyosin-V Complex in the Rigor State (Central 3ER/2ER) (pdb code 7plu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Cryo-Em Structure of the Actomyosin-V Complex in the Rigor State (Central 3ER/2ER), PDB code: 7plu:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Cryo-Em Structure of the Actomyosin-V Complex in the Rigor State (Central 3ER/2ER)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Actomyosin-V Complex in the Rigor State (Central 3ER/2ER) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:22.1 occ:1.00 O2B C:ADP401 2.3 34.7 1.0 O3B C:ADP401 3.1 34.7 1.0 NE2 C:GLN137 3.1 24.6 1.0 PB C:ADP401 3.2 34.7 1.0 CD C:GLN137 3.9 24.6 1.0 OD2 C:ASP11 4.0 30.2 1.0 OE1 C:GLN137 4.1 24.6 1.0 O2A C:ADP401 4.2 34.7 1.0 O3A C:ADP401 4.3 34.7 1.0 O1B C:ADP401 4.3 34.7 1.0 OD1 C:ASP154 4.4 23.0 1.0 CG2 C:VAL339 4.5 23.6 1.0 CA C:GLY13 4.6 32.6 1.0 OD1 C:ASP11 4.7 30.2 1.0 NZ C:LYS18 4.8 27.2 1.0 CG C:ASP11 4.8 30.2 1.0 CB C:VAL339 4.8 23.6 1.0 CA C:GLY156 4.8 24.7 1.0 PA C:ADP401 4.9 34.7 1.0 OD2 C:ASP154 4.9 23.0 1.0

Magnesium binding site 2 out of 3 in the Cryo-Em Structure of the Actomyosin-V Complex in the Rigor State (Central 3ER/2ER)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Actomyosin-V Complex in the Rigor State (Central 3ER/2ER) within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg402 b:23.6 occ:1.00 O2B F:ADP401 2.3 33.9 1.0 O3B F:ADP401 3.1 33.9 1.0 PB F:ADP401 3.2 33.9 1.0 NE2 F:GLN137 3.5 27.2 1.0 O2A F:ADP401 4.0 33.9 1.0 CD F:GLN137 4.2 27.2 1.0 OD2 F:ASP11 4.2 33.2 1.0 O3A F:ADP401 4.2 33.9 1.0 OE1 F:GLN137 4.3 27.2 1.0 O1B F:ADP401 4.4 33.9 1.0 OD1 F:ASP154 4.4 26.4 1.0 CA F:GLY156 4.5 26.4 1.0 CG2 F:VAL339 4.7 45.5 1.0 CA F:GLY13 4.7 34.5 1.0 PA F:ADP401 4.7 33.9 1.0 NZ F:LYS18 4.8 28.4 1.0 OD1 F:ASP11 4.9 33.2 1.0 CA F:GLY301 4.9 22.4 1.0 CG F:ASP11 5.0 33.2 1.0 N F:GLY156 5.0 26.4 1.0

Magnesium binding site 3 out of 3 in the Cryo-Em Structure of the Actomyosin-V Complex in the Rigor State (Central 3ER/2ER)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of the Actomyosin-V Complex in the Rigor State (Central 3ER/2ER) within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg402 b:24.4 occ:1.00 O2B G:ADP401 2.2 35.3 1.0 O3B G:ADP401 2.8 35.3 1.0 PB G:ADP401 2.9 35.3 1.0 O2A G:ADP401 3.4 35.3 1.0 O3A G:ADP401 3.7 35.3 1.0 CA G:GLY156 3.7 26.5 1.0 NE2 G:GLN137 4.1 28.3 1.0 OD1 G:ASP154 4.1 26.6 1.0 PA G:ADP401 4.2 35.3 1.0 N G:GLY156 4.2 26.5 1.0 O1B G:ADP401 4.3 35.3 1.0 CA G:GLY301 4.4 23.0 1.0 OE1 G:GLN137 4.6 28.3 1.0 CD G:GLN137 4.7 28.3 1.0 NZ G:LYS18 4.7 24.7 1.0 OD2 G:ASP11 4.7 32.1 1.0 C G:SER155 4.8 25.8 1.0 CG2 G:VAL339 4.9 21.9 1.0 C G:GLY156 5.0 26.5 1.0 N G:GLY302 5.0 25.6 1.0

S.Pospich, H.L.Sweeney, A.Houdusse, S.Raunser. High-Resolution Structures of the Actomyosin-V Complex in Three Nucleotide States Provide Insights Into the Force Generation Mechanism. Elife V. 10 2021.
ISSN: ESSN 2050-084X
PubMed: 34812732
DOI: 10.7554/ELIFE.73724