Magnesium in PDB 7pqc: Tau-Microtubule Structural Ensemble Based on Cryoem Data

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Tau-Microtubule Structural Ensemble Based on Cryoem Data (pdb code 7pqc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the Tau-Microtubule Structural Ensemble Based on Cryoem Data, PDB code: 7pqc:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in 7pqc

Go back to Magnesium Binding Sites List in 7pqc
Magnesium binding site 1 out of 7 in the Tau-Microtubule Structural Ensemble Based on Cryoem Data


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Tau-Microtubule Structural Ensemble Based on Cryoem Data within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg502

b:0.0
occ:1.00
O1B B:GTP501 1.8 0.0 1.0
O2G B:GTP501 1.9 0.0 1.0
OD2 B:ASP98 1.9 0.0 1.0
O3G B:GTP501 1.9 0.0 1.0
OD1 B:ASP69 2.0 0.0 1.0
OD2 B:ASP69 2.0 0.0 1.0
PG B:GTP501 2.4 0.0 1.0
CG B:ASP69 2.4 0.0 1.0
CG B:ASP98 2.9 0.0 1.0
PB B:GTP501 3.0 0.0 1.0
O3B B:GTP501 3.2 0.0 1.0
OD1 B:ASP98 3.4 0.0 1.0
O1G B:GTP501 3.8 0.0 1.0
CB B:ASP69 3.9 0.0 1.0
CB B:THR145 3.9 0.0 1.0
O3A B:GTP501 3.9 0.0 1.0
OG1 B:THR145 4.0 0.0 1.0
O2B B:GTP501 4.1 0.0 1.0
N B:GLN11 4.1 0.0 1.0
N B:THR145 4.2 0.0 1.0
CB B:ASP98 4.2 0.0 1.0
CB B:GLU71 4.2 0.0 1.0
N B:GLU71 4.3 0.0 1.0
N B:LEU70 4.5 0.0 1.0
CA B:ASP69 4.6 0.0 1.0
CA B:GLY10 4.7 0.0 1.0
CA B:THR145 4.7 0.0 1.0
NZ A:LYS252 4.8 0.0 1.0
CB B:GLN11 4.9 0.0 1.0
C B:GLY10 4.9 0.0 1.0
CG2 B:THR145 4.9 0.0 1.0
CA B:GLU71 4.9 0.0 1.0
C B:ASP69 5.0 0.0 1.0

Magnesium binding site 2 out of 7 in 7pqc

Go back to Magnesium Binding Sites List in 7pqc
Magnesium binding site 2 out of 7 in the Tau-Microtubule Structural Ensemble Based on Cryoem Data


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Tau-Microtubule Structural Ensemble Based on Cryoem Data within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg502

b:0.0
occ:1.00
OD1 D:ASP98 1.9 0.0 1.0
O2G D:GTP501 2.0 0.0 1.0
O3G D:GTP501 2.0 0.0 1.0
OD1 D:ASP69 2.0 0.0 1.0
O1B D:GTP501 2.1 0.0 1.0
PG D:GTP501 2.5 0.0 1.0
CG D:ASP98 2.8 0.0 1.0
OD2 D:ASP98 3.1 0.0 1.0
CG D:ASP69 3.1 0.0 1.0
OD2 D:ASP69 3.3 0.0 1.0
PB D:GTP501 3.3 0.0 1.0
O3B D:GTP501 3.4 0.0 1.0
OG1 D:THR145 3.6 0.0 1.0
O1G D:GTP501 3.9 0.0 1.0
NZ C:LYS252 4.0 0.0 1.0
CB D:THR145 4.1 0.0 1.0
N D:GLN11 4.2 0.0 1.0
CB D:ASP98 4.3 0.0 1.0
O3A D:GTP501 4.3 0.0 1.0
CB D:GLU71 4.3 0.0 1.0
N D:GLU71 4.4 0.0 1.0
CB D:ASP69 4.4 0.0 1.0
O2B D:GTP501 4.5 0.0 1.0
CB D:GLN11 4.6 0.0 1.0
N D:LEU70 4.6 0.0 1.0
OE1 D:GLU71 4.7 0.0 1.0
N D:ALA99 4.7 0.0 1.0
N D:THR145 4.8 0.0 1.0
O2A D:GTP501 4.8 0.0 1.0
CA D:GLY10 4.8 0.0 1.0
CA D:ASP98 5.0 0.0 1.0
PA D:GTP501 5.0 0.0 1.0

Magnesium binding site 3 out of 7 in 7pqc

Go back to Magnesium Binding Sites List in 7pqc
Magnesium binding site 3 out of 7 in the Tau-Microtubule Structural Ensemble Based on Cryoem Data


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Tau-Microtubule Structural Ensemble Based on Cryoem Data within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg502

b:0.0
occ:1.00
O3G F:GTP501 1.8 0.0 1.0
OD1 F:ASP69 1.9 0.0 1.0
OD1 F:ASP98 1.9 0.0 1.0
OD2 F:ASP69 1.9 0.0 1.0
O2G F:GTP501 1.9 0.0 1.0
O1B F:GTP501 2.0 0.0 1.0
CG F:ASP69 2.3 0.0 1.0
PG F:GTP501 2.4 0.0 1.0
CG F:ASP98 3.0 0.0 1.0
PB F:GTP501 3.1 0.0 1.0
OD2 F:ASP98 3.2 0.0 1.0
O3B F:GTP501 3.2 0.0 1.0
O1G F:GTP501 3.8 0.0 1.0
CB F:ASP69 3.9 0.0 1.0
O3A F:GTP501 3.9 0.0 1.0
OG1 F:THR145 4.0 0.0 1.0
CB F:THR145 4.2 0.0 1.0
O2B F:GTP501 4.3 0.0 1.0
CB F:ASP98 4.3 0.0 1.0
N F:GLN11 4.4 0.0 1.0
N F:LEU70 4.4 0.0 1.0
N F:ALA99 4.4 0.0 1.0
NZ E:LYS252 4.4 0.0 1.0
CB F:GLU71 4.5 0.0 1.0
CA F:ASP69 4.6 0.0 1.0
CA F:ASP98 4.7 0.0 1.0
N F:THR145 4.7 0.0 1.0
CA F:GLY10 4.8 0.0 1.0
N F:GLU71 4.9 0.0 1.0
C F:ASP69 4.9 0.0 1.0
CB F:GLN11 5.0 0.0 1.0

Magnesium binding site 4 out of 7 in 7pqc

Go back to Magnesium Binding Sites List in 7pqc
Magnesium binding site 4 out of 7 in the Tau-Microtubule Structural Ensemble Based on Cryoem Data


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Tau-Microtubule Structural Ensemble Based on Cryoem Data within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg502

b:0.0
occ:1.00
O3G H:GTP501 1.9 0.0 1.0
OD1 H:ASP98 1.9 0.0 1.0
OD1 H:ASP69 1.9 0.0 1.0
OD2 H:ASP69 1.9 0.0 1.0
O1B H:GTP501 1.9 0.0 1.0
O2G H:GTP501 2.0 0.0 1.0
CG H:ASP69 2.3 0.0 1.0
PG H:GTP501 2.4 0.0 1.0
CG H:ASP98 2.9 0.0 1.0
PB H:GTP501 3.1 0.0 1.0
O3B H:GTP501 3.1 0.0 1.0
OD2 H:ASP98 3.3 0.0 1.0
OG1 H:THR145 3.7 0.0 1.0
CB H:ASP69 3.8 0.0 1.0
O1G H:GTP501 3.8 0.0 1.0
CB H:ASP98 4.0 0.0 1.0
CB H:THR145 4.1 0.0 1.0
O3A H:GTP501 4.2 0.0 1.0
O2B H:GTP501 4.2 0.0 1.0
NZ G:LYS252 4.4 0.0 1.0
N H:GLN11 4.5 0.0 1.0
CA H:ASP98 4.5 0.0 1.0
N H:LEU70 4.5 0.0 1.0
N H:ALA99 4.6 0.0 1.0
CA H:ASP69 4.7 0.0 1.0
CB H:GLN11 4.7 0.0 1.0
N H:GLU71 4.8 0.0 1.0
CA H:GLY10 4.8 0.0 1.0
N H:THR145 4.9 0.0 1.0
C H:ASP69 4.9 0.0 1.0
CG2 H:THR145 4.9 0.0 1.0
CE G:LYS252 5.0 0.0 1.0

Magnesium binding site 5 out of 7 in 7pqc

Go back to Magnesium Binding Sites List in 7pqc
Magnesium binding site 5 out of 7 in the Tau-Microtubule Structural Ensemble Based on Cryoem Data


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Tau-Microtubule Structural Ensemble Based on Cryoem Data within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg502

b:0.0
occ:1.00
OD1 J:ASP69 1.8 0.0 1.0
O1B J:GTP501 1.8 0.0 1.0
O2G J:GTP501 1.9 0.0 1.0
OD2 J:ASP98 1.9 0.0 1.0
OD1 J:ASP98 2.0 0.0 1.0
CG J:ASP98 2.3 0.0 1.0
OD2 J:ASP69 2.5 0.0 1.0
CG J:ASP69 2.6 0.0 1.0
PG J:GTP501 2.9 0.0 1.0
PB J:GTP501 2.9 0.0 1.0
OG1 J:THR145 3.1 0.0 1.0
O3B J:GTP501 3.2 0.0 1.0
O3G J:GTP501 3.3 0.0 1.0
CB J:THR145 3.7 0.0 1.0
O2B J:GTP501 3.7 0.0 1.0
CB J:ASP98 3.7 0.0 1.0
N J:LEU70 4.0 0.0 1.0
CB J:ASP69 4.1 0.0 1.0
NZ I:LYS252 4.2 0.0 1.0
O1G J:GTP501 4.2 0.0 1.0
O3A J:GTP501 4.2 0.0 1.0
N J:ALA99 4.3 0.0 1.0
N J:GLN11 4.4 0.0 1.0
CA J:ASP98 4.5 0.0 1.0
CA J:GLY10 4.5 0.0 1.0
CA J:ASP69 4.6 0.0 1.0
CG2 J:THR145 4.6 0.0 1.0
N J:THR145 4.7 0.0 1.0
CA J:THR145 4.8 0.0 1.0
C J:ASP69 4.8 0.0 1.0
C J:ASP98 4.9 0.0 1.0
CA J:LEU70 4.9 0.0 1.0
C J:GLY10 5.0 0.0 1.0
CB J:LEU70 5.0 0.0 1.0

Magnesium binding site 6 out of 7 in 7pqc

Go back to Magnesium Binding Sites List in 7pqc
Magnesium binding site 6 out of 7 in the Tau-Microtubule Structural Ensemble Based on Cryoem Data


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Tau-Microtubule Structural Ensemble Based on Cryoem Data within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg502

b:0.0
occ:1.00
O3G L:GTP501 1.9 0.0 1.0
OD2 L:ASP69 1.9 0.0 1.0
OD1 L:ASP98 1.9 0.0 1.0
O1B L:GTP501 2.0 0.0 1.0
OD1 L:ASP69 2.2 0.0 1.0
CG L:ASP69 2.5 0.0 1.0
PG L:GTP501 3.1 0.0 1.0
CG L:ASP98 3.1 0.0 1.0
PB L:GTP501 3.1 0.0 1.0
O3B L:GTP501 3.4 0.0 1.0
O2G L:GTP501 3.6 0.0 1.0
O1A L:GTP501 3.8 0.0 1.0
NZ K:LYS252 3.9 0.0 1.0
CB L:ASP98 3.9 0.0 1.0
OG1 L:THR145 3.9 0.0 1.0
OD2 L:ASP98 4.0 0.0 1.0
CB L:ASP69 4.0 0.0 1.0
O3A L:GTP501 4.0 0.0 1.0
N L:GLN11 4.2 0.0 1.0
CB L:THR145 4.3 0.0 1.0
O1G L:GTP501 4.3 0.0 1.0
O2B L:GTP501 4.4 0.0 1.0
PA L:GTP501 4.4 0.0 1.0
CG L:GLU71 4.7 0.0 1.0
CE K:LYS252 4.7 0.0 1.0
CA L:GLY10 4.7 0.0 1.0
N L:LEU70 4.8 0.0 1.0
CA L:ASP98 4.8 0.0 1.0
C L:GLY10 4.9 0.0 1.0
CB L:GLN11 5.0 0.0 1.0
CG2 L:THR145 5.0 0.0 1.0

Magnesium binding site 7 out of 7 in 7pqc

Go back to Magnesium Binding Sites List in 7pqc
Magnesium binding site 7 out of 7 in the Tau-Microtubule Structural Ensemble Based on Cryoem Data


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Tau-Microtubule Structural Ensemble Based on Cryoem Data within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Mg502

b:0.0
occ:1.00
OD1 N:ASP98 1.9 0.0 1.0
O1B N:GTP501 1.9 0.0 1.0
OD1 N:ASP69 1.9 0.0 1.0
OD2 N:ASP69 1.9 0.0 1.0
O2G N:GTP501 2.0 0.0 1.0
O3G N:GTP501 2.0 0.0 1.0
CG N:ASP69 2.4 0.0 1.0
PG N:GTP501 2.5 0.0 1.0
CG N:ASP98 2.8 0.0 1.0
OD2 N:ASP98 2.9 0.0 1.0
PB N:GTP501 3.1 0.0 1.0
O3B N:GTP501 3.3 0.0 1.0
OG1 N:THR145 3.7 0.0 1.0
CB N:ASP69 3.9 0.0 1.0
O1G N:GTP501 3.9 0.0 1.0
O3A N:GTP501 4.1 0.0 1.0
O2B N:GTP501 4.1 0.0 1.0
CB N:THR145 4.1 0.0 1.0
N N:LEU70 4.2 0.0 1.0
CB N:ASP98 4.2 0.0 1.0
CB N:GLU71 4.4 0.0 1.0
N N:GLU71 4.5 0.0 1.0
N N:ALA99 4.5 0.0 1.0
NZ M:LYS252 4.6 0.0 1.0
N N:GLN11 4.6 0.0 1.0
CA N:ASP69 4.7 0.0 1.0
N N:THR145 4.7 0.0 1.0
CA N:GLY10 4.8 0.0 1.0
CA N:ASP98 4.9 0.0 1.0
CA N:LEU70 4.9 0.0 1.0
C N:ASP69 4.9 0.0 1.0
CB N:LEU70 4.9 0.0 1.0

Reference:

Z.F.Brotzakis, P.R.Lindstedt, R.J.Taylor, D.J.Rinauro, N.C.T.Gallagher, G.J.L.Bernardes, M.Vendruscolo. A Structural Ensemble of A Tau-Microtubule Complex Reveals Regulatory Tau Phosphorylation and Acetylation Mechanisms Acs Cent.Sci. 2021.
ISSN: ESSN 2374-7951
DOI: 10.1021/ACSCENTSCI.1C00585
Page generated: Fri Dec 17 10:52:38 2021

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy