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Magnesium in PDB 7py1: Cryoem Structure of E.Coli Rna Polymerase Elongation Complex Bound to Nusg (the Consensus Nusg-Ec)

Enzymatic activity of Cryoem Structure of E.Coli Rna Polymerase Elongation Complex Bound to Nusg (the Consensus Nusg-Ec)

All present enzymatic activity of Cryoem Structure of E.Coli Rna Polymerase Elongation Complex Bound to Nusg (the Consensus Nusg-Ec):
2.7.7.6;

Other elements in 7py1:

The structure of Cryoem Structure of E.Coli Rna Polymerase Elongation Complex Bound to Nusg (the Consensus Nusg-Ec) also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryoem Structure of E.Coli Rna Polymerase Elongation Complex Bound to Nusg (the Consensus Nusg-Ec) (pdb code 7py1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryoem Structure of E.Coli Rna Polymerase Elongation Complex Bound to Nusg (the Consensus Nusg-Ec), PDB code: 7py1:

Magnesium binding site 1 out of 1 in 7py1

Go back to Magnesium Binding Sites List in 7py1
Magnesium binding site 1 out of 1 in the Cryoem Structure of E.Coli Rna Polymerase Elongation Complex Bound to Nusg (the Consensus Nusg-Ec)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of E.Coli Rna Polymerase Elongation Complex Bound to Nusg (the Consensus Nusg-Ec) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1501

b:61.4
occ:1.00
 OD1 D:ASP460 2.2 57.1 1.0
O3' R:G14 2.2 75.5 1.0
OD1 D:ASP464 2.8 58.0 1.0
OD1 D:ASP462 2.9 56.2 1.0
CG D:ASP460 2.9 57.1 1.0
OD2 D:ASP460 2.9 57.1 1.0
OD2 D:ASP464 3.3 58.0 1.0
OD2 D:ASP462 3.3 56.2 1.0
CG D:ASP464 3.4 58.0 1.0
C3' R:G14 3.4 75.5 1.0
CG D:ASP462 3.5 56.2 1.0
C4' R:G14 3.9 75.5 1.0
C5' R:G14 4.1 75.5 1.0
CB D:ASP460 4.3 57.1 1.0
O2' R:G14 4.5 75.5 1.0
O D:ASP460 4.5 57.1 1.0
C2' R:G14 4.6 75.5 1.0
N D:ASP460 4.7 57.1 1.0
CA D:ASP460 4.9 57.1 1.0
CB D:ASP464 4.9 58.0 1.0
CB D:ASP462 4.9 56.2 1.0
C D:ASP460 5.0 57.1 1.0

Reference:

C.Zhu, X.Guo, P.Dumas, M.Takacs, M.Abdelkareem, A.Vanden Broeck, C.Saint-Andre, G.Papai, C.Crucifix, J.Ortiz, A.Weixlbaumer. Transcription Factors Modulate Rna Polymerase Conformational Equilibrium. Nat Commun V. 13 1546 2022.
ISSN: ESSN 2041-1723
PubMed: 35318334
DOI: 10.1038/S41467-022-29148-0
Page generated: Thu Apr 6 19:29:21 2023

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