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Magnesium in PDB 7pyt: Benzoylsuccinyl-Coa Thiolase with Coenzyme A

Protein crystallography data

The structure of Benzoylsuccinyl-Coa Thiolase with Coenzyme A, PDB code: 7pyt was solved by U.Ermler, J.Heider, S.Weidenweber, U.Demmer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.67 / 1.70
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 117.34, 117.34, 228, 90, 90, 90
R / Rfree (%) 15.8 / 18.1

Other elements in 7pyt:

The structure of Benzoylsuccinyl-Coa Thiolase with Coenzyme A also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Benzoylsuccinyl-Coa Thiolase with Coenzyme A (pdb code 7pyt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Benzoylsuccinyl-Coa Thiolase with Coenzyme A, PDB code: 7pyt:

Magnesium binding site 1 out of 1 in 7pyt

Go back to Magnesium Binding Sites List in 7pyt
Magnesium binding site 1 out of 1 in the Benzoylsuccinyl-Coa Thiolase with Coenzyme A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Benzoylsuccinyl-Coa Thiolase with Coenzyme A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg403

b:44.9
occ:1.00
N B:ASP45 2.9 29.2 1.0
CG B:ASP45 3.1 39.2 1.0
OD1 B:ASP45 3.1 30.8 1.0
N B:PRO44 3.2 29.4 1.0
O B:HOH666 3.3 52.3 1.0
CD B:PRO44 3.3 31.6 1.0
O10 B:PE8404 3.4 71.3 0.5
C B:ARG43 3.4 32.8 1.0
OD2 B:ASP45 3.5 32.9 1.0
CB B:ASP45 3.6 35.7 1.0
CA B:ARG43 3.6 34.9 1.0
CA B:ASP45 3.8 29.5 1.0
C12 B:PE8404 3.8 70.8 0.5
CB B:ARG43 3.8 34.1 1.0
C B:PRO44 3.9 31.2 1.0
CA B:PRO44 3.9 30.7 1.0
O B:ARG43 4.1 30.0 1.0
C11 B:PE8404 4.1 71.6 0.5
C9 B:PE8404 4.1 70.6 0.5
CB B:PRO44 4.2 32.2 1.0
CG B:PRO44 4.3 37.2 1.0
C8 B:PE8404 4.3 68.5 0.5
CG B:ARG43 4.7 42.4 1.0
C B:ASP45 4.7 32.1 1.0
N B:MET46 4.8 27.5 0.5
N B:MET46 4.9 29.0 0.5
O7 B:PE8404 5.0 64.9 0.5
N B:ARG43 5.0 34.5 1.0

Reference:

S.Weidenweber, K.Schuhle, M.L.Lippert, J.Mock, A.Seubert, U.Demmer, U.Ermler, J.Heider. Finis Tolueni: A New Type of Thiolase with An Integrated Zn-Finger Subunit Catalyzes the Final Step of Anaerobic Toluene Metabolism. Febs J. V. 289 5599 2022.
ISSN: ISSN 1742-464X
PubMed: 35313080
DOI: 10.1111/FEBS.16443
Page generated: Thu Apr 6 19:29:06 2023

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