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Magnesium in PDB 7q7m: Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at 100 Mpa Helium Gas Pressure in A Sapphire Capillary

Protein crystallography data

The structure of Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at 100 Mpa Helium Gas Pressure in A Sapphire Capillary, PDB code: 7q7m was solved by J.Lieske, S.Guenther, S.Saouane, G.K.Selikhanov, A.G.Gabdulkhakov, A.Meents, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.95 / 2.55
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 102.21, 102.21, 237.71, 90, 90, 90
R / Rfree (%) 18.3 / 22.3

Other elements in 7q7m:

The structure of Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at 100 Mpa Helium Gas Pressure in A Sapphire Capillary also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Iron (Fe) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at 100 Mpa Helium Gas Pressure in A Sapphire Capillary (pdb code 7q7m). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at 100 Mpa Helium Gas Pressure in A Sapphire Capillary, PDB code: 7q7m:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 7q7m

Go back to Magnesium Binding Sites List in 7q7m
Magnesium binding site 1 out of 4 in the Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at 100 Mpa Helium Gas Pressure in A Sapphire Capillary


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at 100 Mpa Helium Gas Pressure in A Sapphire Capillary within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg302

b:29.5
occ:1.00
MG L:BCL302 0.0 29.5 1.0
ND L:BCL302 2.0 30.6 1.0
NB L:BCL302 2.1 28.9 1.0
NC L:BCL302 2.1 28.9 1.0
NA L:BCL302 2.2 26.9 1.0
NE2 L:HIS153 2.2 31.5 1.0
C4D L:BCL302 3.0 30.4 1.0
C4B L:BCL302 3.1 27.9 1.0
C1B L:BCL302 3.1 27.6 1.0
C1C L:BCL302 3.1 29.8 1.0
CE1 L:HIS153 3.1 31.6 1.0
C4A L:BCL302 3.1 27.8 1.0
C1D L:BCL302 3.1 31.4 1.0
C4C L:BCL302 3.2 28.6 1.0
C1A L:BCL302 3.2 27.1 1.0
CD2 L:HIS153 3.2 34.1 1.0
HE1 L:HIS153 3.3 38.0 1.0
HD2 L:HIS153 3.4 41.0 1.0
CHC L:BCL302 3.4 29.6 1.0
CHB L:BCL302 3.4 27.5 1.0
CHA L:BCL302 3.5 31.2 1.0
CHD L:BCL302 3.5 30.4 1.0
HE2 M:TYR210 4.0 30.9 1.0
HBB3 L:BPH301 4.1 36.5 1.0
HBB2 L:BPH301 4.2 36.5 1.0
HBC1 L:BCL302 4.2 40.0 1.0
C3D L:BCL302 4.2 32.6 1.0
H201 L:BPH301 4.2 50.6 1.0
ND1 L:HIS153 4.2 32.5 1.0
C2D L:BCL302 4.3 29.9 1.0
C2B L:BCL302 4.3 27.4 1.0
HD12 L:LEU154 4.3 48.6 1.0
CG L:HIS153 4.3 32.2 1.0
C3B L:BCL302 4.3 30.3 1.0
HD11 L:LEU154 4.4 48.6 1.0
C2C L:BCL302 4.4 29.3 1.0
H202 L:BPH301 4.4 50.6 1.0
C3A L:BCL302 4.4 25.9 1.0
C3C L:BCL302 4.5 28.4 1.0
C2A L:BCL302 4.5 26.2 1.0
HHC L:BCL302 4.5 35.5 1.0
HHB L:BCL302 4.5 33.0 1.0
HBA1 L:BCL302 4.5 33.6 1.0
HBA2 L:BCL302 4.6 33.6 1.0
CBB L:BPH301 4.6 30.4 1.0
HHD L:BCL302 4.6 36.5 1.0
HBB1 L:BPH301 4.6 36.5 1.0
HMC1 L:BCL302 4.7 38.5 1.0
HMA1 L:BCL302 4.7 33.3 1.0
CD1 L:LEU154 4.8 40.5 1.0
HBC3 L:BCL302 4.8 40.0 1.0
CE2 M:TYR210 4.9 25.7 1.0
C20 L:BPH301 4.9 42.1 1.0
CBD L:BCL302 4.9 37.4 1.0
CBC L:BCL302 4.9 33.3 1.0
HD1 L:HIS153 5.0 39.0 1.0

Magnesium binding site 2 out of 4 in 7q7m

Go back to Magnesium Binding Sites List in 7q7m
Magnesium binding site 2 out of 4 in the Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at 100 Mpa Helium Gas Pressure in A Sapphire Capillary


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at 100 Mpa Helium Gas Pressure in A Sapphire Capillary within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg303

b:28.1
occ:1.00
MG L:BCL303 0.0 28.1 1.0
ND L:BCL303 2.0 36.6 1.0
NB L:BCL303 2.1 30.0 1.0
NC L:BCL303 2.1 35.9 1.0
NE2 L:HIS173 2.1 43.7 1.0
NA L:BCL303 2.2 31.3 1.0
HBB3 M:BCL402 2.7 44.7 1.0
CE1 L:HIS173 2.9 40.5 1.0
HE1 L:HIS173 3.0 48.7 1.0
C4D L:BCL303 3.0 35.7 1.0
C1B L:BCL303 3.1 30.9 1.0
C4B L:BCL303 3.1 32.2 1.0
C1C L:BCL303 3.1 42.0 1.0
C4A L:BCL303 3.1 31.2 1.0
C1D L:BCL303 3.2 33.8 1.0
C4C L:BCL303 3.2 36.0 1.0
C1A L:BCL303 3.2 30.6 1.0
CD2 L:HIS173 3.3 40.2 1.0
CHC L:BCL303 3.4 34.9 1.0
CHB L:BCL303 3.4 29.8 1.0
CHA L:BCL303 3.5 34.5 1.0
CHD L:BCL303 3.5 36.5 1.0
HD2 L:HIS173 3.6 48.3 1.0
CBB M:BCL402 3.6 37.2 1.0
HBB2 M:BCL402 3.6 44.7 1.0
HD2 L:PHE167 4.0 57.0 1.0
ND1 L:HIS173 4.1 40.6 1.0
CAB M:BCL402 4.2 38.7 1.0
C3D L:BCL303 4.3 32.2 1.0
CG L:HIS173 4.3 40.4 1.0
C2B L:BCL303 4.3 35.2 1.0
C2D L:BCL303 4.3 34.4 1.0
C3B L:BCL303 4.3 36.5 1.0
HD11 L:ILE177 4.4 35.8 1.0
C3A L:BCL303 4.4 29.2 1.0
C2C L:BCL303 4.4 41.0 1.0
HBB1 M:BCL402 4.5 44.7 1.0
C3C L:BCL303 4.5 40.5 1.0
HHB L:BCL303 4.5 35.8 1.0
HHC L:BCL303 4.5 41.9 1.0
C2A L:BCL303 4.5 30.7 1.0
HHD L:BCL303 4.6 43.9 1.0
OBB M:BCL402 4.6 33.5 1.0
HMA1 L:BCL303 4.6 35.9 1.0
CD2 L:PHE167 4.7 47.5 1.0
HB3 L:PHE167 4.7 53.3 1.0
HMB2 M:BCL402 4.7 41.6 1.0
C3B M:BCL402 4.7 39.5 1.0
HMC1 L:BCL303 4.8 44.8 1.0
HD1 L:HIS173 4.8 48.8 1.0
CBD L:BCL303 5.0 31.5 1.0

Magnesium binding site 3 out of 4 in 7q7m

Go back to Magnesium Binding Sites List in 7q7m
Magnesium binding site 3 out of 4 in the Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at 100 Mpa Helium Gas Pressure in A Sapphire Capillary


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at 100 Mpa Helium Gas Pressure in A Sapphire Capillary within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Mg402

b:35.5
occ:1.00
MG M:BCL402 0.0 35.5 1.0
ND M:BCL402 2.0 34.1 1.0
NB M:BCL402 2.1 39.2 1.0
NC M:BCL402 2.1 37.5 1.0
NA M:BCL402 2.2 33.7 1.0
NE2 M:HIS202 2.4 30.6 1.0
C4D M:BCL402 3.0 30.8 1.0
C4B M:BCL402 3.1 38.8 1.0
C1B M:BCL402 3.1 36.7 1.0
C1C M:BCL402 3.1 36.2 1.0
C1D M:BCL402 3.1 33.1 1.0
C4A M:BCL402 3.1 30.2 1.0
C4C M:BCL402 3.2 33.2 1.0
C1A M:BCL402 3.2 31.8 1.0
HBB1 L:BCL303 3.3 41.4 1.0
CD2 M:HIS202 3.3 31.3 1.0
CE1 M:HIS202 3.3 33.3 1.0
CHC M:BCL402 3.4 37.1 1.0
HBB2 L:BCL303 3.4 41.4 1.0
CHA M:BCL402 3.4 31.4 1.0
CHB M:BCL402 3.4 33.8 1.0
HD2 M:HIS202 3.5 37.6 1.0
HE1 M:HIS202 3.5 40.0 1.0
CHD M:BCL402 3.5 29.2 1.0
CBB L:BCL303 3.7 34.4 1.0
CAB L:BCL303 3.9 34.2 1.0
OBB L:BCL303 4.0 30.5 1.0
HD11 M:ILE206 4.2 47.0 1.0
C3D M:BCL402 4.2 33.6 1.0
C2B M:BCL402 4.3 34.5 1.0
C2D M:BCL402 4.3 33.8 1.0
C3B M:BCL402 4.3 39.5 1.0
C2C M:BCL402 4.4 33.9 1.0
C3C M:BCL402 4.4 36.8 1.0
HHC M:BCL402 4.5 44.5 1.0
ND1 M:HIS202 4.5 33.3 1.0
C3A M:BCL402 4.5 32.9 1.0
CG M:HIS202 4.5 33.4 1.0
C2A M:BCL402 4.5 30.4 1.0
HHB M:BCL402 4.5 40.6 1.0
HD12 M:LEU196 4.5 43.9 1.0
C3B L:BCL303 4.6 36.5 1.0
HHD M:BCL402 4.6 35.1 1.0
HMC1 M:BCL402 4.6 38.5 1.0
HBB3 L:BCL303 4.7 41.4 1.0
HG13 M:ILE206 4.8 45.5 1.0
CBD M:BCL402 4.9 34.8 1.0
HMB1 L:BCL303 4.9 36.2 1.0
CD1 M:ILE206 4.9 39.2 1.0

Magnesium binding site 4 out of 4 in 7q7m

Go back to Magnesium Binding Sites List in 7q7m
Magnesium binding site 4 out of 4 in the Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at 100 Mpa Helium Gas Pressure in A Sapphire Capillary


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at 100 Mpa Helium Gas Pressure in A Sapphire Capillary within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Mg403

b:35.8
occ:1.00
MG M:BCL403 0.0 35.8 1.0
ND M:BCL403 2.0 31.1 1.0
NB M:BCL403 2.1 31.5 1.0
NC M:BCL403 2.1 30.7 1.0
NA M:BCL403 2.2 30.3 1.0
NE2 M:HIS182 2.2 33.6 1.0
C4D M:BCL403 3.0 30.2 1.0
CD2 M:HIS182 3.1 35.8 1.0
C4B M:BCL403 3.1 29.0 1.0
C1B M:BCL403 3.1 27.7 1.0
C1C M:BCL403 3.1 32.7 1.0
C4A M:BCL403 3.1 29.1 1.0
C1D M:BCL403 3.1 31.6 1.0
C4C M:BCL403 3.1 30.6 1.0
HD2 M:HIS182 3.2 43.0 1.0
C1A M:BCL403 3.2 30.6 1.0
CE1 M:HIS182 3.2 37.0 1.0
CHC M:BCL403 3.4 29.7 1.0
CHB M:BCL403 3.4 27.9 1.0
CHA M:BCL403 3.5 29.9 1.0
CHD M:BCL403 3.5 30.4 1.0
HE1 M:HIS182 3.5 44.4 1.0
HM52 M:SPN410 3.8 71.2 0.7
HBB3 M:BPH404 4.1 43.7 1.0
C3D M:BCL403 4.2 31.0 1.0
CG M:HIS182 4.3 39.0 1.0
HE2 L:PHE181 4.3 34.2 1.0
C2B M:BCL403 4.3 27.3 1.0
C2D M:BCL403 4.3 30.4 1.0
ND1 M:HIS182 4.3 39.2 1.0
C3B M:BCL403 4.3 31.4 1.0
C3A M:BCL403 4.4 31.7 1.0
HBA2 M:BCL403 4.4 46.7 1.0
C2C M:BCL403 4.4 31.3 1.0
C3C M:BCL403 4.4 31.6 1.0
HBB2 M:BPH404 4.4 43.7 1.0
HHB M:BCL403 4.5 33.5 1.0
C2A M:BCL403 4.5 33.7 1.0
HHC M:BCL403 4.5 35.6 1.0
H141 M:SPN410 4.5 71.4 0.7
H3A M:OLC409 4.5 75.5 0.3
HMA1 M:BCL403 4.5 39.3 1.0
HHD M:BCL403 4.6 36.5 1.0
H3 M:OLC409 4.6 75.5 0.3
HD23 M:LEU183 4.6 62.3 1.0
HBC1 M:BCL403 4.7 40.2 1.0
CBB M:BPH404 4.8 36.4 1.0
CM5 M:SPN410 4.8 59.3 0.7
H2 M:OLC409 4.8 70.2 0.3
HM53 M:SPN410 4.9 71.2 0.7
H41 M:BCL402 4.9 48.4 1.0
HMC1 M:BCL403 4.9 37.2 1.0
CBD M:BCL403 4.9 29.9 1.0
CMA M:BCL403 5.0 32.7 1.0
H3C M:BCL403 5.0 38.0 1.0

Reference:

J.Lieske, S.Saouane, S.Guenther, J.Meyer, T.Pakendorf, B.Reime, A.Burkhardt, E.Crosas, J.Hakanpaeae, K.Stachnik, J.Sieg, M.Rarey, M.H.Abdellatif, A.G.Gabdulkhakov, G.K.Selikhanov, H.N.Chapman, A.Meents. Fixed-Target High-Pressure Macromolecular Crystallography To Be Published.
Page generated: Thu Oct 3 05:00:01 2024

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