Atomistry » Magnesium » PDB 7q0j-7qba » 7q7n
Atomistry »
  Magnesium »
    PDB 7q0j-7qba »
      7q7n »

Magnesium in PDB 7q7n: Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at 120 Mpa Helium Gas Pressure in A Sapphire Capillary

Protein crystallography data

The structure of Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at 120 Mpa Helium Gas Pressure in A Sapphire Capillary, PDB code: 7q7n was solved by J.Lieske, S.Guenther, S.Saouane, G.K.Selikhanov, A.G.Gabdulkhakov, A.Meents, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.91 / 2.87
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 102.13, 102.13, 237.61, 90, 90, 90
R / Rfree (%) 18.9 / 22.8

Other elements in 7q7n:

The structure of Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at 120 Mpa Helium Gas Pressure in A Sapphire Capillary also contains other interesting chemical elements:

Iron (Fe) 1 atom
Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at 120 Mpa Helium Gas Pressure in A Sapphire Capillary (pdb code 7q7n). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at 120 Mpa Helium Gas Pressure in A Sapphire Capillary, PDB code: 7q7n:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 7q7n

Go back to Magnesium Binding Sites List in 7q7n
Magnesium binding site 1 out of 4 in the Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at 120 Mpa Helium Gas Pressure in A Sapphire Capillary


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at 120 Mpa Helium Gas Pressure in A Sapphire Capillary within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg302

b:26.9
occ:1.00
MG L:BCL302 0.0 26.9 1.0
ND L:BCL302 2.0 26.4 1.0
NB L:BCL302 2.1 27.6 1.0
NC L:BCL302 2.1 27.8 1.0
NA L:BCL302 2.2 27.3 1.0
NE2 L:HIS153 2.2 35.7 1.0
C4D L:BCL302 3.0 28.0 1.0
CE1 L:HIS153 3.1 36.3 1.0
C4B L:BCL302 3.1 28.5 1.0
C1B L:BCL302 3.1 28.1 1.0
C1C L:BCL302 3.1 28.1 1.0
C1D L:BCL302 3.1 27.9 1.0
C4A L:BCL302 3.1 27.1 1.0
HE1 L:HIS153 3.2 43.5 1.0
C4C L:BCL302 3.2 28.7 1.0
C1A L:BCL302 3.2 27.3 1.0
CD2 L:HIS153 3.3 35.8 1.0
CHC L:BCL302 3.4 28.6 1.0
CHB L:BCL302 3.4 28.6 1.0
CHA L:BCL302 3.5 28.0 1.0
CHD L:BCL302 3.5 28.9 1.0
HD2 L:HIS153 3.5 42.9 1.0
HE2 M:TYR210 4.0 44.9 1.0
HBC1 L:BCL302 4.0 37.1 1.0
HBB3 L:BPH301 4.1 30.9 1.0
HBB2 L:BPH301 4.2 30.9 1.0
C3D L:BCL302 4.2 30.1 1.0
ND1 L:HIS153 4.2 37.6 1.0
HD12 L:LEU154 4.3 55.6 1.0
C2D L:BCL302 4.3 28.7 1.0
C2B L:BCL302 4.3 27.8 1.0
HD11 L:LEU154 4.3 55.6 1.0
C3B L:BCL302 4.3 29.0 1.0
CG L:HIS153 4.4 36.6 1.0
C2C L:BCL302 4.4 28.4 1.0
H202 L:BPH301 4.4 38.2 1.0
C3A L:BCL302 4.4 25.0 1.0
C3C L:BCL302 4.4 29.2 1.0
HBA1 L:BCL302 4.5 38.0 1.0
H201 L:BPH301 4.5 38.2 1.0
HHB L:BCL302 4.5 34.3 1.0
C2A L:BCL302 4.5 26.6 1.0
HHC L:BCL302 4.5 34.3 1.0
CBB L:BPH301 4.6 25.8 1.0
HHD L:BCL302 4.6 34.7 1.0
HBA2 L:BCL302 4.6 38.0 1.0
HBB1 L:BPH301 4.6 30.9 1.0
HMC1 L:BCL302 4.7 32.7 1.0
CD1 L:LEU154 4.7 46.4 1.0
HMA1 L:BCL302 4.7 27.8 1.0
CBC L:BCL302 4.9 31.0 1.0
CE2 M:TYR210 4.9 37.4 1.0
CBD L:BCL302 4.9 30.5 1.0
HD1 L:HIS153 4.9 45.1 1.0
HBC3 L:BCL302 4.9 37.1 1.0
CBA L:BCL302 5.0 31.7 1.0

Magnesium binding site 2 out of 4 in 7q7n

Go back to Magnesium Binding Sites List in 7q7n
Magnesium binding site 2 out of 4 in the Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at 120 Mpa Helium Gas Pressure in A Sapphire Capillary


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at 120 Mpa Helium Gas Pressure in A Sapphire Capillary within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg303

b:30.5
occ:1.00
MG L:BCL303 0.0 30.5 1.0
ND L:BCL303 2.0 33.8 1.0
NB L:BCL303 2.1 31.3 1.0
NE2 L:HIS173 2.1 47.3 1.0
NC L:BCL303 2.1 34.0 1.0
NA L:BCL303 2.2 31.2 1.0
CE1 L:HIS173 2.9 45.8 1.0
HBB3 M:BCL402 2.9 45.6 1.0
HE1 L:HIS173 3.0 54.9 1.0
C4D L:BCL303 3.0 34.5 1.0
C1B L:BCL303 3.1 31.3 1.0
C4B L:BCL303 3.1 31.6 1.0
C1C L:BCL303 3.1 34.0 1.0
C4A L:BCL303 3.1 30.8 1.0
C1D L:BCL303 3.2 34.5 1.0
C4C L:BCL303 3.2 33.1 1.0
C1A L:BCL303 3.2 32.8 1.0
CD2 L:HIS173 3.2 45.4 1.0
CHC L:BCL303 3.4 33.1 1.0
CHB L:BCL303 3.4 31.6 1.0
CHA L:BCL303 3.5 34.1 1.0
CHD L:BCL303 3.5 34.0 1.0
HD2 L:HIS173 3.5 54.4 1.0
CBB M:BCL402 3.9 38.1 1.0
HD2 L:PHE167 4.1 55.8 1.0
ND1 L:HIS173 4.1 45.5 1.0
CAB M:BCL402 4.2 39.0 1.0
HBB2 M:BCL402 4.2 45.6 1.0
C3D L:BCL303 4.3 34.8 1.0
CG L:HIS173 4.3 44.2 1.0
C2B L:BCL303 4.3 29.6 1.0
C3B L:BCL303 4.3 31.2 1.0
C2D L:BCL303 4.3 34.9 1.0
C3A L:BCL303 4.4 31.8 1.0
C2C L:BCL303 4.4 32.1 1.0
C3C L:BCL303 4.5 31.5 1.0
HD11 L:ILE177 4.5 42.2 1.0
HHB L:BCL303 4.5 38.0 1.0
HHC L:BCL303 4.5 39.7 1.0
C2A L:BCL303 4.5 33.1 1.0
OBB M:BCL402 4.5 38.7 1.0
HHD L:BCL303 4.5 40.8 1.0
HMA1 L:BCL303 4.6 37.7 1.0
HMB2 M:BCL402 4.7 47.0 1.0
HBB1 M:BCL402 4.7 45.6 1.0
C3B M:BCL402 4.7 40.0 1.0
HB3 L:PHE167 4.7 52.9 1.0
CD2 L:PHE167 4.7 46.6 1.0
HMC1 L:BCL303 4.8 36.8 1.0
HD1 L:HIS173 4.8 54.6 1.0
CMA L:BCL303 5.0 31.4 1.0
CBD L:BCL303 5.0 32.9 1.0

Magnesium binding site 3 out of 4 in 7q7n

Go back to Magnesium Binding Sites List in 7q7n
Magnesium binding site 3 out of 4 in the Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at 120 Mpa Helium Gas Pressure in A Sapphire Capillary


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at 120 Mpa Helium Gas Pressure in A Sapphire Capillary within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Mg402

b:39.3
occ:1.00
MG M:BCL402 0.0 39.3 1.0
ND M:BCL402 2.0 37.7 1.0
NB M:BCL402 2.1 39.7 1.0
NC M:BCL402 2.1 39.5 1.0
NA M:BCL402 2.2 38.0 1.0
NE2 M:HIS202 2.4 34.8 1.0
C4D M:BCL402 3.0 36.8 1.0
C4B M:BCL402 3.1 40.0 1.0
C1B M:BCL402 3.1 38.8 1.0
C1C M:BCL402 3.1 39.1 1.0
C4A M:BCL402 3.1 37.0 1.0
C1D M:BCL402 3.1 36.6 1.0
C4C M:BCL402 3.2 38.1 1.0
HBB1 L:BCL303 3.2 37.4 1.0
C1A M:BCL402 3.2 36.5 1.0
CE1 M:HIS202 3.3 35.6 1.0
HBB2 L:BCL303 3.3 37.4 1.0
HE1 M:HIS202 3.3 42.7 1.0
CHC M:BCL402 3.4 39.0 1.0
CHB M:BCL402 3.4 38.5 1.0
CHA M:BCL402 3.4 36.6 1.0
CD2 M:HIS202 3.4 35.5 1.0
CHD M:BCL402 3.5 35.9 1.0
CBB L:BCL303 3.6 31.2 1.0
HD2 M:HIS202 3.6 42.5 1.0
CAB L:BCL303 3.8 31.2 1.0
OBB L:BCL303 3.9 31.0 1.0
HD11 M:ILE206 4.0 41.5 1.0
C3D M:BCL402 4.2 36.9 1.0
C2B M:BCL402 4.3 38.9 1.0
C2D M:BCL402 4.3 36.8 1.0
C3B M:BCL402 4.3 40.0 1.0
C2C M:BCL402 4.4 39.2 1.0
ND1 M:HIS202 4.4 36.3 1.0
C3C M:BCL402 4.5 39.9 1.0
C3A M:BCL402 4.5 34.5 1.0
HHC M:BCL402 4.5 46.8 1.0
C2A M:BCL402 4.5 35.4 1.0
C3B L:BCL303 4.5 31.2 1.0
HHB M:BCL402 4.5 46.1 1.0
CG M:HIS202 4.6 36.2 1.0
HHD M:BCL402 4.6 43.1 1.0
HMC1 M:BCL402 4.6 46.4 1.0
HBB3 L:BCL303 4.7 37.4 1.0
HD12 M:LEU196 4.8 43.6 1.0
CBD M:BCL402 4.9 37.2 1.0
HG13 M:ILE206 4.9 40.7 1.0
CD1 M:ILE206 4.9 34.6 1.0
HMA1 M:BCL402 5.0 38.9 1.0
HMB1 L:BCL303 5.0 32.3 1.0
H2A M:BCL402 5.0 42.5 1.0

Magnesium binding site 4 out of 4 in 7q7n

Go back to Magnesium Binding Sites List in 7q7n
Magnesium binding site 4 out of 4 in the Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at 120 Mpa Helium Gas Pressure in A Sapphire Capillary


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at 120 Mpa Helium Gas Pressure in A Sapphire Capillary within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Mg403

b:24.9
occ:1.00
MG M:BCL403 0.0 24.9 1.0
ND M:BCL403 2.0 25.7 1.0
NB M:BCL403 2.1 26.2 1.0
NC M:BCL403 2.1 26.4 1.0
NA M:BCL403 2.2 28.3 1.0
NE2 M:HIS182 2.2 41.6 1.0
C4D M:BCL403 3.0 27.0 1.0
CE1 M:HIS182 3.0 40.3 1.0
C1B M:BCL403 3.1 27.2 1.0
C4B M:BCL403 3.1 26.3 1.0
C1C M:BCL403 3.1 27.2 1.0
C1D M:BCL403 3.1 26.1 1.0
C4A M:BCL403 3.1 28.0 1.0
HE1 M:HIS182 3.1 48.3 1.0
C4C M:BCL403 3.1 25.5 1.0
C1A M:BCL403 3.2 29.0 1.0
CD2 M:HIS182 3.3 40.1 1.0
CHB M:BCL403 3.4 27.7 1.0
CHC M:BCL403 3.4 26.1 1.0
CHA M:BCL403 3.5 28.6 1.0
CHD M:BCL403 3.5 25.6 1.0
HD2 M:HIS182 3.5 48.1 1.0
HM52 M:SPN409 4.0 51.0 0.6
HE2 L:PHE181 4.1 43.3 1.0
ND1 M:HIS182 4.2 41.3 1.0
C3D M:BCL403 4.2 28.9 1.0
HBB3 M:BPH304 4.3 33.8 1.0
C2B M:BCL403 4.3 27.6 1.0
C2D M:BCL403 4.3 27.7 1.0
C3B M:BCL403 4.3 28.2 1.0
CG M:HIS182 4.3 40.6 1.0
HBB2 M:BPH304 4.3 33.8 1.0
HBA2 M:BCL403 4.4 42.6 1.0
H3A M:OLC408 4.4 50.6 0.4
C3A M:BCL403 4.4 28.4 1.0
C2C M:BCL403 4.4 27.2 1.0
C3C M:BCL403 4.4 26.9 1.0
HHB M:BCL403 4.5 33.3 1.0
C2A M:BCL403 4.5 29.8 1.0
HBC1 M:BCL403 4.5 33.7 1.0
HHC M:BCL403 4.5 31.3 1.0
HHD M:BCL403 4.5 30.6 1.0
HD23 M:LEU183 4.6 48.3 1.0
HMA1 M:BCL403 4.6 33.8 1.0
CBB M:BPH304 4.8 28.2 1.0
H141 M:SPN409 4.8 50.4 0.6
HD21 M:LEU183 4.9 48.3 1.0
CBD M:BCL403 4.9 30.5 1.0
HD1 M:HIS182 4.9 49.5 1.0
CM5 M:SPN409 5.0 42.5 0.6
HMC1 M:BCL403 5.0 31.4 1.0
HM53 M:SPN409 5.0 51.0 0.6

Reference:

J.Lieske, S.Saouane, S.Guenther, J.Meyer, T.Pakendorf, B.Reime, A.Burkhardt, E.Crosas, J.Hakanpaeae, K.Stachnik, J.Sieg, M.Rarey, M.H.Abdellatif, A.G.Gabdulkhakov, G.K.Selikhanov, H.N.Chapman, A.Meents. Fixed-Target High-Pressure Macromolecular Crystallography To Be Published.
Page generated: Thu Oct 3 05:00:16 2024

Last articles

Mn in 2B97
Mn in 2B5J
Mn in 2BAN
Mn in 2B51
Mn in 2AXT
Mn in 2AU6
Mn in 2AU9
Mn in 2AU7
Mn in 2AW9
Mn in 2AU8
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy