Atomistry » Magnesium » PDB 7q0j-7qba » 7q7o
Atomistry »
  Magnesium »
    PDB 7q0j-7qba »
      7q7o »

Magnesium in PDB 7q7o: Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at Atmospheric Pressure After High Helium Gas Pressure Release

Protein crystallography data

The structure of Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at Atmospheric Pressure After High Helium Gas Pressure Release, PDB code: 7q7o was solved by J.Lieske, S.Guenther, S.Saouane, G.K.Selikhanov, A.G.Gabdulkhakov, A.Meents, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.07 / 2.65
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 102.52, 102.52, 237.68, 90, 90, 90
R / Rfree (%) 17.6 / 21.5

Other elements in 7q7o:

The structure of Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at Atmospheric Pressure After High Helium Gas Pressure Release also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Iron (Fe) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at Atmospheric Pressure After High Helium Gas Pressure Release (pdb code 7q7o). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at Atmospheric Pressure After High Helium Gas Pressure Release, PDB code: 7q7o:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 7q7o

Go back to Magnesium Binding Sites List in 7q7o
Magnesium binding site 1 out of 4 in the Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at Atmospheric Pressure After High Helium Gas Pressure Release


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at Atmospheric Pressure After High Helium Gas Pressure Release within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg302

b:36.1
occ:1.00
MG L:BCL302 0.0 36.1 1.0
ND L:BCL302 2.0 35.8 1.0
NB L:BCL302 2.1 36.6 1.0
NC L:BCL302 2.1 36.2 1.0
NA L:BCL302 2.2 35.9 1.0
NE2 L:HIS153 2.2 44.6 1.0
C4D L:BCL302 3.0 35.9 1.0
CE1 L:HIS153 3.1 45.7 1.0
C4B L:BCL302 3.1 35.8 1.0
C1B L:BCL302 3.1 35.7 1.0
C1C L:BCL302 3.1 36.4 1.0
C1D L:BCL302 3.1 36.0 1.0
C4A L:BCL302 3.1 36.3 1.0
C4C L:BCL302 3.2 35.2 1.0
C1A L:BCL302 3.2 35.9 1.0
HE1 L:HIS153 3.2 54.8 1.0
CD2 L:HIS153 3.2 45.8 1.0
CHC L:BCL302 3.4 35.9 1.0
CHB L:BCL302 3.4 35.8 1.0
HD2 L:HIS153 3.4 54.9 1.0
CHA L:BCL302 3.4 36.2 1.0
CHD L:BCL302 3.5 35.6 1.0
HE2 M:TYR210 4.0 43.3 1.0
HBB2 L:BPH301 4.2 47.7 1.0
HBC1 L:BCL302 4.2 43.5 1.0
ND1 L:HIS153 4.2 47.6 1.0
C3D L:BCL302 4.2 37.6 1.0
HD12 L:LEU154 4.2 58.8 1.0
HD11 L:LEU154 4.3 58.8 1.0
H201 L:BPH301 4.3 49.5 1.0
C2D L:BCL302 4.3 36.6 1.0
CG L:HIS153 4.3 46.5 1.0
C2B L:BCL302 4.3 35.3 1.0
H202 L:BPH301 4.3 49.5 1.0
C3B L:BCL302 4.3 35.9 1.0
HBB3 L:BPH301 4.4 47.7 1.0
C2C L:BCL302 4.4 36.4 1.0
HBA1 L:BCL302 4.4 47.7 1.0
C3A L:BCL302 4.4 35.9 1.0
C3C L:BCL302 4.5 34.9 1.0
HHC L:BCL302 4.5 43.1 1.0
C2A L:BCL302 4.5 36.5 1.0
HHB L:BCL302 4.5 42.9 1.0
HHD L:BCL302 4.6 42.7 1.0
CBB L:BPH301 4.6 39.8 1.0
HBB1 L:BPH301 4.6 47.7 1.0
CD1 L:LEU154 4.7 49.0 1.0
HBA2 L:BCL302 4.7 47.7 1.0
HMA1 L:BCL302 4.8 42.2 1.0
HMC1 L:BCL302 4.8 45.5 1.0
C20 L:BPH301 4.8 41.3 1.0
CE2 M:TYR210 4.9 36.1 1.0
CBD L:BCL302 4.9 38.0 1.0
HD13 L:LEU154 4.9 58.8 1.0
HD1 L:HIS153 4.9 57.0 1.0

Magnesium binding site 2 out of 4 in 7q7o

Go back to Magnesium Binding Sites List in 7q7o
Magnesium binding site 2 out of 4 in the Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at Atmospheric Pressure After High Helium Gas Pressure Release


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at Atmospheric Pressure After High Helium Gas Pressure Release within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg303

b:38.1
occ:1.00
MG L:BCL303 0.0 38.1 1.0
ND L:BCL303 2.0 42.6 1.0
NB L:BCL303 2.1 42.0 1.0
NE2 L:HIS173 2.1 53.2 1.0
NC L:BCL303 2.1 45.1 1.0
NA L:BCL303 2.2 40.8 1.0
HBB3 M:BCL402 2.7 54.6 1.0
CE1 L:HIS173 2.9 50.0 1.0
HE1 L:HIS173 2.9 59.9 1.0
C4D L:BCL303 3.0 43.0 1.0
C4B L:BCL303 3.1 43.9 1.0
C1B L:BCL303 3.1 42.3 1.0
C1C L:BCL303 3.1 46.7 1.0
C4A L:BCL303 3.1 41.0 1.0
C1D L:BCL303 3.2 43.8 1.0
C4C L:BCL303 3.2 46.0 1.0
C1A L:BCL303 3.2 40.8 1.0
CD2 L:HIS173 3.3 49.8 1.0
CHC L:BCL303 3.4 45.2 1.0
CHB L:BCL303 3.4 41.6 1.0
CHA L:BCL303 3.5 41.7 1.0
CHD L:BCL303 3.5 45.3 1.0
CBB M:BCL402 3.6 45.5 1.0
HD2 L:HIS173 3.6 59.7 1.0
HBB2 M:BCL402 3.7 54.6 1.0
ND1 L:HIS173 4.1 49.7 1.0
CAB M:BCL402 4.1 45.5 1.0
HD2 L:PHE167 4.2 62.9 1.0
C3D L:BCL303 4.2 43.0 1.0
C2B L:BCL303 4.3 42.7 1.0
CG L:HIS173 4.3 48.0 1.0
C2D L:BCL303 4.3 43.9 1.0
C3B L:BCL303 4.3 43.7 1.0
C3A L:BCL303 4.4 40.3 1.0
C2C L:BCL303 4.4 47.8 1.0
HBB1 M:BCL402 4.5 54.6 1.0
C3C L:BCL303 4.5 47.7 1.0
HD11 L:ILE177 4.5 45.1 1.0
HHC L:BCL303 4.5 54.1 1.0
HHB L:BCL303 4.5 49.9 1.0
C2A L:BCL303 4.5 39.9 1.0
OBB M:BCL402 4.5 44.6 1.0
HHD L:BCL303 4.6 54.3 1.0
HMA1 L:BCL303 4.6 49.2 1.0
HMB2 M:BCL402 4.7 53.9 1.0
C3B M:BCL402 4.7 45.9 1.0
HD1 L:HIS173 4.8 59.6 1.0
HB3 L:PHE167 4.8 62.6 1.0
CD2 L:PHE167 4.9 52.5 1.0
HMC1 L:BCL303 4.9 57.8 1.0
CBD L:BCL303 5.0 40.0 1.0
HAC2 L:BCL303 5.0 59.7 1.0
CMA L:BCL303 5.0 41.0 1.0

Magnesium binding site 3 out of 4 in 7q7o

Go back to Magnesium Binding Sites List in 7q7o
Magnesium binding site 3 out of 4 in the Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at Atmospheric Pressure After High Helium Gas Pressure Release


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at Atmospheric Pressure After High Helium Gas Pressure Release within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Mg402

b:43.0
occ:1.00
MG M:BCL402 0.0 43.0 1.0
ND M:BCL402 2.0 42.0 1.0
NB M:BCL402 2.1 45.0 1.0
NC M:BCL402 2.1 44.7 1.0
NA M:BCL402 2.2 44.1 1.0
NE2 M:HIS202 2.4 36.8 1.0
C4D M:BCL402 3.0 41.2 1.0
C4B M:BCL402 3.1 45.1 1.0
C1B M:BCL402 3.1 44.9 1.0
C1C M:BCL402 3.1 43.8 1.0
C4A M:BCL402 3.1 44.1 1.0
C4C M:BCL402 3.1 43.7 1.0
C1D M:BCL402 3.2 41.9 1.0
C1A M:BCL402 3.2 42.5 1.0
CD2 M:HIS202 3.3 38.0 1.0
HBB1 L:BCL303 3.3 54.6 1.0
CE1 M:HIS202 3.4 38.2 1.0
CHC M:BCL402 3.4 44.0 1.0
HBB2 L:BCL303 3.4 54.6 1.0
CHB M:BCL402 3.4 44.4 1.0
CHA M:BCL402 3.4 41.4 1.0
HD2 M:HIS202 3.4 45.6 1.0
CHD M:BCL402 3.5 41.8 1.0
HE1 M:HIS202 3.5 45.8 1.0
CBB L:BCL303 3.7 45.5 1.0
CAB L:BCL303 3.9 44.1 1.0
OBB L:BCL303 4.0 42.3 1.0
HD11 M:ILE206 4.2 50.2 1.0
C3D M:BCL402 4.2 41.4 1.0
C2B M:BCL402 4.3 45.3 1.0
C3B M:BCL402 4.3 45.9 1.0
C2D M:BCL402 4.3 41.4 1.0
C2C M:BCL402 4.4 43.6 1.0
C3C M:BCL402 4.4 44.5 1.0
C3A M:BCL402 4.4 43.3 1.0
C2A M:BCL402 4.5 43.0 1.0
HHC M:BCL402 4.5 52.7 1.0
ND1 M:HIS202 4.5 38.4 1.0
CG M:HIS202 4.5 38.9 1.0
HHB M:BCL402 4.5 53.2 1.0
HHD M:BCL402 4.6 50.1 1.0
HD12 M:LEU196 4.6 53.7 1.0
C3B L:BCL303 4.6 43.7 1.0
HMC1 M:BCL402 4.7 52.1 1.0
HBB3 L:BCL303 4.8 54.6 1.0
CBD M:BCL402 4.9 41.7 1.0
HG13 M:ILE206 4.9 47.9 1.0
O2D M:BCL402 4.9 41.3 1.0
HMA1 M:BCL402 5.0 50.1 1.0
H2A M:BCL402 5.0 51.5 1.0
CD1 M:ILE206 5.0 41.9 1.0

Magnesium binding site 4 out of 4 in 7q7o

Go back to Magnesium Binding Sites List in 7q7o
Magnesium binding site 4 out of 4 in the Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at Atmospheric Pressure After High Helium Gas Pressure Release


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Room Temperature Structure of the Rhodobacter Sphaeroides Photosynthetic Reaction Center F(M197)H Mutant at Atmospheric Pressure After High Helium Gas Pressure Release within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Mg403

b:34.1
occ:1.00
MG M:BCL403 0.0 34.1 1.0
ND M:BCL403 2.0 31.4 1.0
NB M:BCL403 2.1 32.2 1.0
NC M:BCL403 2.1 34.9 1.0
NA M:BCL403 2.2 34.0 1.0
NE2 M:HIS182 2.2 49.1 1.0
C4D M:BCL403 3.0 32.8 1.0
CE1 M:HIS182 3.0 49.9 1.0
C1B M:BCL403 3.1 31.6 1.0
C4B M:BCL403 3.1 33.3 1.0
HE1 M:HIS182 3.1 59.8 1.0
C1D M:BCL403 3.1 32.5 1.0
C1C M:BCL403 3.1 35.4 1.0
C4A M:BCL403 3.1 32.2 1.0
C4C M:BCL403 3.1 34.5 1.0
C1A M:BCL403 3.2 34.7 1.0
CD2 M:HIS182 3.3 50.3 1.0
CHB M:BCL403 3.4 31.2 1.0
CHC M:BCL403 3.4 34.3 1.0
CHD M:BCL403 3.5 32.7 1.0
CHA M:BCL403 3.5 34.6 1.0
HD2 M:HIS182 3.5 60.3 1.0
HM52 M:SPN409 3.9 78.3 0.5
HBB3 M:BPH304 4.1 45.7 1.0
ND1 M:HIS182 4.2 50.7 1.0
C3D M:BCL403 4.2 33.6 1.0
HBA2 M:BCL403 4.2 48.4 1.0
C2B M:BCL403 4.3 30.5 1.0
C2D M:BCL403 4.3 32.6 1.0
HE2 L:PHE181 4.3 42.5 1.0
C3B M:BCL403 4.3 32.8 1.0
CG M:HIS182 4.3 50.1 1.0
C2C M:BCL403 4.4 36.7 1.0
C3A M:BCL403 4.4 33.3 1.0
HM53 M:SPN409 4.4 78.3 0.5
HBB2 M:BPH304 4.4 45.7 1.0
C3C M:BCL403 4.4 36.5 1.0
HHB M:BCL403 4.5 37.4 1.0
H2 M:OLC408 4.5 77.2 0.5
HHC M:BCL403 4.5 41.2 1.0
C2A M:BCL403 4.5 35.2 1.0
HHD M:BCL403 4.5 39.1 1.0
HD23 M:LEU183 4.6 59.6 1.0
HMA1 M:BCL403 4.6 38.8 1.0
CM5 M:SPN409 4.7 65.3 0.5
H3A M:OLC408 4.7 78.3 0.5
H141 M:SPN409 4.7 76.8 0.5
CBB M:BPH304 4.8 38.1 1.0
H3 M:OLC408 4.8 78.3 0.5
HBC1 M:BCL403 4.8 47.1 1.0
HD21 M:LEU183 4.9 59.6 1.0
HD1 M:HIS182 4.9 60.8 1.0
H3C M:BCL403 4.9 43.8 1.0
CBD M:BCL403 4.9 35.9 1.0
HMC1 M:BCL403 4.9 45.3 1.0
H41 M:BCL402 5.0 52.1 1.0

Reference:

J.Lieske, S.Saouane, S.Guenther, J.Meyer, T.Pakendorf, B.Reime, A.Burkhardt, E.Crosas, J.Hakanpaeae, K.Stachnik, J.Sieg, M.Rarey, M.H.Abdellatif, A.G.Gabdulkhakov, G.K.Selikhanov, H.N.Chapman, A.Meents. Fixed-Target High-Pressure Macromolecular Crystallography To Be Published.
Page generated: Thu Oct 3 05:00:18 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy