Atomistry » Magnesium » PDB 7q0j-7qba » 7q8c
Atomistry »
  Magnesium »
    PDB 7q0j-7qba »
      7q8c »

Magnesium in PDB 7q8c: Leishmania Major Actin Filament in Adp-State

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Leishmania Major Actin Filament in Adp-State (pdb code 7q8c). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Leishmania Major Actin Filament in Adp-State, PDB code: 7q8c:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 7q8c

Go back to Magnesium Binding Sites List in 7q8c
Magnesium binding site 1 out of 5 in the Leishmania Major Actin Filament in Adp-State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Leishmania Major Actin Filament in Adp-State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:12.2
occ:1.00
 O A:HOH769 2.0 18.0 1.0
O A:HOH736 2.0 13.8 1.0
O A:HOH738 2.0 16.1 1.0
O A:HOH703 2.0 12.1 1.0
O A:HOH731 2.1 13.7 1.0
O3B A:ADP600 2.1 11.3 1.0
O2A A:ADP600 3.2 11.3 1.0
PB A:ADP600 3.6 11.3 1.0
O A:HOH762 4.1 13.1 1.0
O3A A:ADP600 4.3 11.3 1.0
PA A:ADP600 4.3 11.3 1.0
O2B A:ADP600 4.3 11.3 1.0
OD2 A:ASP11 4.4 15.9 1.0
OD1 A:ASP154 4.5 12.2 1.0
O1B A:ADP600 4.5 11.3 1.0
OE1 A:GLN137 4.6 16.4 1.0
O A:HOH756 4.6 14.8 1.0
OD1 A:ASP11 4.6 15.9 1.0
O A:HOH758 4.8 15.0 1.0
CD A:GLN137 4.9 16.4 1.0
CA A:GLY156 4.9 11.3 1.0
CG A:ASP11 4.9 15.9 1.0

Magnesium binding site 2 out of 5 in 7q8c

Go back to Magnesium Binding Sites List in 7q8c
Magnesium binding site 2 out of 5 in the Leishmania Major Actin Filament in Adp-State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Leishmania Major Actin Filament in Adp-State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:12.9
occ:1.00
 O B:HOH771 2.0 17.7 1.0
O B:HOH737 2.0 14.9 1.0
O B:HOH738 2.0 15.1 1.0
O B:HOH704 2.0 12.5 1.0
O B:HOH731 2.1 14.4 1.0
O3B B:ADP600 2.1 12.2 1.0
O2A B:ADP600 3.2 12.2 1.0
PB B:ADP600 3.6 12.2 1.0
O B:HOH764 4.1 14.5 1.0
O3A B:ADP600 4.3 12.2 1.0
PA B:ADP600 4.3 12.2 1.0
O2B B:ADP600 4.3 12.2 1.0
OD2 B:ASP11 4.4 17.3 1.0
OD1 B:ASP154 4.5 11.8 1.0
O1B B:ADP600 4.5 12.2 1.0
O B:HOH759 4.6 15.7 1.0
OE1 B:GLN137 4.6 16.1 1.0
OD1 B:ASP11 4.6 17.3 1.0
O B:HOH761 4.8 15.7 1.0
CD B:GLN137 4.9 16.1 1.0
CA B:GLY156 4.9 12.6 1.0
CG B:ASP11 4.9 17.3 1.0

Magnesium binding site 3 out of 5 in 7q8c

Go back to Magnesium Binding Sites List in 7q8c
Magnesium binding site 3 out of 5 in the Leishmania Major Actin Filament in Adp-State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Leishmania Major Actin Filament in Adp-State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg601

b:12.7
occ:1.00
 O C:HOH770 2.0 18.2 1.0
O C:HOH736 2.0 15.0 1.0
O C:HOH738 2.0 15.7 1.0
O C:HOH704 2.0 11.8 1.0
O C:HOH731 2.1 14.2 1.0
O3B C:ADP600 2.1 11.8 1.0
O2A C:ADP600 3.2 11.8 1.0
PB C:ADP600 3.6 11.8 1.0
O C:HOH763 4.1 13.4 1.0
O3A C:ADP600 4.3 11.8 1.0
PA C:ADP600 4.3 11.8 1.0
O2B C:ADP600 4.3 11.8 1.0
OD2 C:ASP11 4.4 16.4 1.0
OD1 C:ASP154 4.5 12.4 1.0
O1B C:ADP600 4.5 11.8 1.0
OE1 C:GLN137 4.6 16.5 1.0
O C:HOH757 4.6 15.3 1.0
OD1 C:ASP11 4.6 16.4 1.0
O C:HOH755 4.8 15.5 1.0
CD C:GLN137 4.9 16.5 1.0
CA C:GLY156 4.9 11.9 1.0
CG C:ASP11 4.9 16.4 1.0

Magnesium binding site 4 out of 5 in 7q8c

Go back to Magnesium Binding Sites List in 7q8c
Magnesium binding site 4 out of 5 in the Leishmania Major Actin Filament in Adp-State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Leishmania Major Actin Filament in Adp-State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg601

b:10.7
occ:1.00
 O D:HOH767 2.0 17.4 1.0
O D:HOH734 2.0 12.0 1.0
O D:HOH738 2.0 13.9 1.0
O D:HOH705 2.0 11.2 1.0
O D:HOH730 2.1 14.4 1.0
O3B D:ADP600 2.1 10.5 1.0
O2A D:ADP600 3.2 10.5 1.0
PB D:ADP600 3.6 10.5 1.0
O D:HOH760 4.1 12.8 1.0
O3A D:ADP600 4.3 10.5 1.0
PA D:ADP600 4.3 10.5 1.0
O2B D:ADP600 4.3 10.5 1.0
OD2 D:ASP11 4.4 15.5 1.0
OD1 D:ASP154 4.5 11.5 1.0
O1B D:ADP600 4.5 10.5 1.0
OE1 D:GLN137 4.6 16.1 1.0
OD1 D:ASP11 4.6 15.5 1.0
O D:HOH756 4.6 14.7 1.0
O D:HOH759 4.8 13.5 1.0
CD D:GLN137 4.9 16.1 1.0
CA D:GLY156 4.9 10.8 1.0
CG D:ASP11 4.9 15.5 1.0

Magnesium binding site 5 out of 5 in 7q8c

Go back to Magnesium Binding Sites List in 7q8c
Magnesium binding site 5 out of 5 in the Leishmania Major Actin Filament in Adp-State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Leishmania Major Actin Filament in Adp-State within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg601

b:11.7
occ:1.00
 O E:HOH765 2.0 18.0 1.0
O E:HOH733 2.0 13.3 1.0
O E:HOH735 2.0 14.5 1.0
O E:HOH705 2.1 12.0 1.0
O E:HOH729 2.1 15.2 1.0
O3B E:ADP600 2.1 11.2 1.0
O2A E:ADP600 3.2 11.2 1.0
PB E:ADP600 3.6 11.2 1.0
O E:HOH758 4.1 13.5 1.0
O3A E:ADP600 4.3 11.2 1.0
PA E:ADP600 4.3 11.2 1.0
O2B E:ADP600 4.3 11.2 1.0
OD2 E:ASP11 4.4 16.1 1.0
OD1 E:ASP154 4.5 11.6 1.0
O1B E:ADP600 4.5 11.2 1.0
OE1 E:GLN137 4.6 16.4 1.0
O E:HOH754 4.6 13.8 1.0
OD1 E:ASP11 4.6 16.1 1.0
O E:HOH757 4.8 14.5 1.0
CD E:GLN137 4.9 16.4 1.0
CA E:GLY156 4.9 11.0 1.0
CG E:ASP11 4.9 16.1 1.0

Reference:

T.Kotila, H.Wioland, M.Selvaraj, K.Kogan, L.Antenucci, A.Jegou, J.T.Huiskonen, G.Romet-Lemonne, P.Lappalainen. Structural Basis of Rapid Actin Dynamics in the Evolutionarily Divergent Leishmania Parasite. Nat Commun V. 13 3442 2022.
ISSN: ESSN 2041-1723
PubMed: 35705539
DOI: 10.1038/S41467-022-31068-Y
Page generated: Thu Oct 3 05:03:09 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy