Magnesium in PDB 7q8c: Leishmania Major Actin Filament in Adp-State

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Leishmania Major Actin Filament in Adp-State (pdb code 7q8c). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Leishmania Major Actin Filament in Adp-State, PDB code: 7q8c:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 7q8c

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Magnesium binding site 1 out of 5 in the Leishmania Major Actin Filament in Adp-State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Leishmania Major Actin Filament in Adp-State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:12.2
occ:1.00
 O A:HOH769 2.0 18.0 1.0
O A:HOH736 2.0 13.8 1.0
O A:HOH738 2.0 16.1 1.0
O A:HOH703 2.0 12.1 1.0
O A:HOH731 2.1 13.7 1.0
O3B A:ADP600 2.1 11.3 1.0
O2A A:ADP600 3.2 11.3 1.0
PB A:ADP600 3.6 11.3 1.0
O A:HOH762 4.1 13.1 1.0
O3A A:ADP600 4.3 11.3 1.0
PA A:ADP600 4.3 11.3 1.0
O2B A:ADP600 4.3 11.3 1.0
OD2 A:ASP11 4.4 15.9 1.0
OD1 A:ASP154 4.5 12.2 1.0
O1B A:ADP600 4.5 11.3 1.0
OE1 A:GLN137 4.6 16.4 1.0
O A:HOH756 4.6 14.8 1.0
OD1 A:ASP11 4.6 15.9 1.0
O A:HOH758 4.8 15.0 1.0
CD A:GLN137 4.9 16.4 1.0
CA A:GLY156 4.9 11.3 1.0
CG A:ASP11 4.9 15.9 1.0

Magnesium binding site 2 out of 5 in 7q8c

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Magnesium binding site 2 out of 5 in the Leishmania Major Actin Filament in Adp-State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Leishmania Major Actin Filament in Adp-State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:12.9
occ:1.00
 O B:HOH771 2.0 17.7 1.0
O B:HOH737 2.0 14.9 1.0
O B:HOH738 2.0 15.1 1.0
O B:HOH704 2.0 12.5 1.0
O B:HOH731 2.1 14.4 1.0
O3B B:ADP600 2.1 12.2 1.0
O2A B:ADP600 3.2 12.2 1.0
PB B:ADP600 3.6 12.2 1.0
O B:HOH764 4.1 14.5 1.0
O3A B:ADP600 4.3 12.2 1.0
PA B:ADP600 4.3 12.2 1.0
O2B B:ADP600 4.3 12.2 1.0
OD2 B:ASP11 4.4 17.3 1.0
OD1 B:ASP154 4.5 11.8 1.0
O1B B:ADP600 4.5 12.2 1.0
O B:HOH759 4.6 15.7 1.0
OE1 B:GLN137 4.6 16.1 1.0
OD1 B:ASP11 4.6 17.3 1.0
O B:HOH761 4.8 15.7 1.0
CD B:GLN137 4.9 16.1 1.0
CA B:GLY156 4.9 12.6 1.0
CG B:ASP11 4.9 17.3 1.0

Magnesium binding site 3 out of 5 in 7q8c

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Magnesium binding site 3 out of 5 in the Leishmania Major Actin Filament in Adp-State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Leishmania Major Actin Filament in Adp-State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg601

b:12.7
occ:1.00
 O C:HOH770 2.0 18.2 1.0
O C:HOH736 2.0 15.0 1.0
O C:HOH738 2.0 15.7 1.0
O C:HOH704 2.0 11.8 1.0
O C:HOH731 2.1 14.2 1.0
O3B C:ADP600 2.1 11.8 1.0
O2A C:ADP600 3.2 11.8 1.0
PB C:ADP600 3.6 11.8 1.0
O C:HOH763 4.1 13.4 1.0
O3A C:ADP600 4.3 11.8 1.0
PA C:ADP600 4.3 11.8 1.0
O2B C:ADP600 4.3 11.8 1.0
OD2 C:ASP11 4.4 16.4 1.0
OD1 C:ASP154 4.5 12.4 1.0
O1B C:ADP600 4.5 11.8 1.0
OE1 C:GLN137 4.6 16.5 1.0
O C:HOH757 4.6 15.3 1.0
OD1 C:ASP11 4.6 16.4 1.0
O C:HOH755 4.8 15.5 1.0
CD C:GLN137 4.9 16.5 1.0
CA C:GLY156 4.9 11.9 1.0
CG C:ASP11 4.9 16.4 1.0

Magnesium binding site 4 out of 5 in 7q8c

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Magnesium binding site 4 out of 5 in the Leishmania Major Actin Filament in Adp-State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Leishmania Major Actin Filament in Adp-State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg601

b:10.7
occ:1.00
 O D:HOH767 2.0 17.4 1.0
O D:HOH734 2.0 12.0 1.0
O D:HOH738 2.0 13.9 1.0
O D:HOH705 2.0 11.2 1.0
O D:HOH730 2.1 14.4 1.0
O3B D:ADP600 2.1 10.5 1.0
O2A D:ADP600 3.2 10.5 1.0
PB D:ADP600 3.6 10.5 1.0
O D:HOH760 4.1 12.8 1.0
O3A D:ADP600 4.3 10.5 1.0
PA D:ADP600 4.3 10.5 1.0
O2B D:ADP600 4.3 10.5 1.0
OD2 D:ASP11 4.4 15.5 1.0
OD1 D:ASP154 4.5 11.5 1.0
O1B D:ADP600 4.5 10.5 1.0
OE1 D:GLN137 4.6 16.1 1.0
OD1 D:ASP11 4.6 15.5 1.0
O D:HOH756 4.6 14.7 1.0
O D:HOH759 4.8 13.5 1.0
CD D:GLN137 4.9 16.1 1.0
CA D:GLY156 4.9 10.8 1.0
CG D:ASP11 4.9 15.5 1.0

Magnesium binding site 5 out of 5 in 7q8c

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Magnesium binding site 5 out of 5 in the Leishmania Major Actin Filament in Adp-State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Leishmania Major Actin Filament in Adp-State within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg601

b:11.7
occ:1.00
 O E:HOH765 2.0 18.0 1.0
O E:HOH733 2.0 13.3 1.0
O E:HOH735 2.0 14.5 1.0
O E:HOH705 2.1 12.0 1.0
O E:HOH729 2.1 15.2 1.0
O3B E:ADP600 2.1 11.2 1.0
O2A E:ADP600 3.2 11.2 1.0
PB E:ADP600 3.6 11.2 1.0
O E:HOH758 4.1 13.5 1.0
O3A E:ADP600 4.3 11.2 1.0
PA E:ADP600 4.3 11.2 1.0
O2B E:ADP600 4.3 11.2 1.0
OD2 E:ASP11 4.4 16.1 1.0
OD1 E:ASP154 4.5 11.6 1.0
O1B E:ADP600 4.5 11.2 1.0
OE1 E:GLN137 4.6 16.4 1.0
O E:HOH754 4.6 13.8 1.0
OD1 E:ASP11 4.6 16.1 1.0
O E:HOH757 4.8 14.5 1.0
CD E:GLN137 4.9 16.4 1.0
CA E:GLY156 4.9 11.0 1.0
CG E:ASP11 4.9 16.1 1.0

Reference:

T.Kotila, H.Wioland, M.Selvaraj, K.Kogan, L.Antenucci, A.Jegou, J.T.Huiskonen, G.Romet-Lemonne, P.Lappalainen. Structural Basis of Rapid Actin Dynamics in the Evolutionarily Divergent Leishmania Parasite. Nat Commun V. 13 3442 2022.
ISSN: ESSN 2041-1723
PubMed: 35705539
DOI: 10.1038/S41467-022-31068-Y
Page generated: Thu Oct 3 05:03:09 2024

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