Magnesium in PDB 7qo4: 26S Proteasome Wt-UBP6-Ubvs Complex in the Si State (Atpases, RPN1, UBP6, and Ubvs)

Enzymatic activity of 26S Proteasome Wt-UBP6-Ubvs Complex in the Si State (Atpases, RPN1, UBP6, and Ubvs)

All present enzymatic activity of 26S Proteasome Wt-UBP6-Ubvs Complex in the Si State (Atpases, RPN1, UBP6, and Ubvs):
3.4.19.12;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the 26S Proteasome Wt-UBP6-Ubvs Complex in the Si State (Atpases, RPN1, UBP6, and Ubvs) (pdb code 7qo4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the 26S Proteasome Wt-UBP6-Ubvs Complex in the Si State (Atpases, RPN1, UBP6, and Ubvs), PDB code: 7qo4:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in 7qo4

Go back to Magnesium Binding Sites List in 7qo4
Magnesium binding site 1 out of 6 in the 26S Proteasome Wt-UBP6-Ubvs Complex in the Si State (Atpases, RPN1, UBP6, and Ubvs)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 26S Proteasome Wt-UBP6-Ubvs Complex in the Si State (Atpases, RPN1, UBP6, and Ubvs) within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg502

b:0.0
occ:1.00
 OE1 H:GLU310 2.0 0.0 1.0
CB H:ASN356 3.0 0.0 1.0
CD H:GLU310 3.1 0.0 1.0
OE2 H:GLU310 3.4 0.0 1.0
O1G H:ATP501 3.7 0.0 1.0
ND2 H:ASN356 3.9 0.0 1.0
N H:ASN356 3.9 0.0 1.0
CG H:ASN356 3.9 0.0 1.0
OD2 H:ASP312 4.0 0.0 1.0
CA H:ASN356 4.0 0.0 1.0
CG H:GLU310 4.4 0.0 1.0
CA H:GLU310 4.5 0.0 1.0
PG H:ATP501 4.7 0.0 1.0
CB H:GLU310 4.7 0.0 1.0
CD1 I:LEU310 4.8 0.0 1.0
CG H:ASP312 4.8 0.0 1.0
O3G H:ATP501 4.8 0.0 1.0
CD2 I:LEU307 4.9 0.0 1.0
N H:GLU310 4.9 0.0 1.0
O H:ALA354 4.9 0.0 1.0
C H:THR355 4.9 0.0 1.0

Magnesium binding site 2 out of 6 in 7qo4

Go back to Magnesium Binding Sites List in 7qo4
Magnesium binding site 2 out of 6 in the 26S Proteasome Wt-UBP6-Ubvs Complex in the Si State (Atpases, RPN1, UBP6, and Ubvs)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of 26S Proteasome Wt-UBP6-Ubvs Complex in the Si State (Atpases, RPN1, UBP6, and Ubvs) within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg502

b:0.0
occ:1.00
 O3B I:ATP501 2.5 0.0 1.0
O2G I:ATP501 2.8 0.0 1.0
NH1 J:ARG306 3.1 0.0 1.0
PG I:ATP501 3.1 0.0 1.0
O2B I:ATP501 3.3 0.0 1.0
CZ J:ARG306 3.4 0.0 1.0
O1G I:ATP501 3.5 0.0 1.0
PB I:ATP501 3.5 0.0 1.0
NH2 J:ARG306 3.6 0.0 1.0
NE J:ARG306 4.2 0.0 1.0
OG1 I:THR230 4.2 0.0 1.0
O1B I:ATP501 4.5 0.0 1.0
O3G I:ATP501 4.5 0.0 1.0
CB I:PRO225 4.6 0.0 1.0
OE2 I:GLU283 4.7 0.0 1.0
O3A I:ATP501 4.8 0.0 1.0
O2A I:ATP501 4.9 0.0 1.0

Magnesium binding site 3 out of 6 in 7qo4

Go back to Magnesium Binding Sites List in 7qo4
Magnesium binding site 3 out of 6 in the 26S Proteasome Wt-UBP6-Ubvs Complex in the Si State (Atpases, RPN1, UBP6, and Ubvs)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of 26S Proteasome Wt-UBP6-Ubvs Complex in the Si State (Atpases, RPN1, UBP6, and Ubvs) within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Mg502

b:0.0
occ:1.00
 OE1 K:GLU273 2.2 0.0 1.0
CD K:GLU273 2.9 0.0 1.0
CG K:GLU273 2.9 0.0 1.0
O2G K:ATP501 3.1 0.0 1.0
OG1 K:THR220 3.4 0.0 1.0
OD1 K:ASN319 3.9 0.0 1.0
O K:ASP272 3.9 0.0 1.0
OE2 K:GLU273 4.0 0.0 1.0
O1G K:ATP501 4.0 0.0 1.0
PG K:ATP501 4.1 0.0 1.0
CB K:ALA317 4.1 0.0 1.0
CB K:GLU273 4.4 0.0 1.0
O2B K:ATP501 4.6 0.0 1.0
C K:ASP272 4.6 0.0 1.0
O3B K:ATP501 4.8 0.0 1.0
CB K:THR220 4.8 0.0 1.0
CG K:ASN319 4.9 0.0 1.0
CA K:GLU273 4.9 0.0 1.0

Magnesium binding site 4 out of 6 in 7qo4

Go back to Magnesium Binding Sites List in 7qo4
Magnesium binding site 4 out of 6 in the 26S Proteasome Wt-UBP6-Ubvs Complex in the Si State (Atpases, RPN1, UBP6, and Ubvs)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of 26S Proteasome Wt-UBP6-Ubvs Complex in the Si State (Atpases, RPN1, UBP6, and Ubvs) within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg502

b:0.0
occ:1.00
 O1G L:ATP501 2.2 0.0 1.0
CG2 L:THR229 2.8 0.0 1.0
O3B L:ATP501 2.9 0.0 1.0
NH2 M:ARG342 3.1 0.0 1.0
OG1 L:THR229 3.1 0.0 1.0
PG L:ATP501 3.2 0.0 1.0
CB L:THR229 3.4 0.0 1.0
CG M:ASP313 3.5 0.0 1.0
OD2 M:ASP313 3.5 0.0 1.0
CB M:ASP313 3.8 0.0 1.0
O1A L:ATP501 3.9 0.0 1.0
OD1 M:ASP313 4.0 0.0 1.0
O2G L:ATP501 4.1 0.0 1.0
CZ M:ARG342 4.3 0.0 1.0
PB L:ATP501 4.3 0.0 1.0
O3G L:ATP501 4.3 0.0 1.0
O3A L:ATP501 4.5 0.0 1.0
PA L:ATP501 4.6 0.0 1.0
OE1 L:GLU282 4.7 0.0 1.0
O2B L:ATP501 4.8 0.0 1.0
CA M:ASP313 4.8 0.0 1.0
NH1 M:ARG342 4.8 0.0 1.0
CA L:THR229 4.8 0.0 1.0
O M:LEU309 4.9 0.0 1.0

Magnesium binding site 5 out of 6 in 7qo4

Go back to Magnesium Binding Sites List in 7qo4
Magnesium binding site 5 out of 6 in the 26S Proteasome Wt-UBP6-Ubvs Complex in the Si State (Atpases, RPN1, UBP6, and Ubvs)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of 26S Proteasome Wt-UBP6-Ubvs Complex in the Si State (Atpases, RPN1, UBP6, and Ubvs) within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Mg502

b:0.0
occ:1.00
 OG1 M:THR229 2.4 0.0 1.0
OD1 M:ASP281 2.6 0.0 1.0
O1G M:ATP501 2.9 0.0 1.0
O2G M:ATP501 2.9 0.0 1.0
O2B M:ATP501 3.0 0.0 1.0
PG M:ATP501 3.3 0.0 1.0
CG M:ASP281 3.5 0.0 1.0
OD1 H:ASP341 3.6 0.0 1.0
CB M:THR229 3.7 0.0 1.0
OD2 M:ASP281 3.7 0.0 1.0
CG2 M:THR229 3.9 0.0 1.0
O3B M:ATP501 4.0 0.0 1.0
PB M:ATP501 4.0 0.0 1.0
CG H:ASP341 4.2 0.0 1.0
CB M:ALA326 4.6 0.0 1.0
CA M:THR229 4.7 0.0 1.0
O3G M:ATP501 4.8 0.0 1.0
O3A M:ATP501 4.8 0.0 1.0
OD2 H:ASP341 4.8 0.0 1.0
N M:THR229 4.9 0.0 1.0
CB H:ASP341 4.9 0.0 1.0
CB M:ASP281 4.9 0.0 1.0

Magnesium binding site 6 out of 6 in 7qo4

Go back to Magnesium Binding Sites List in 7qo4
Magnesium binding site 6 out of 6 in the 26S Proteasome Wt-UBP6-Ubvs Complex in the Si State (Atpases, RPN1, UBP6, and Ubvs)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of 26S Proteasome Wt-UBP6-Ubvs Complex in the Si State (Atpases, RPN1, UBP6, and Ubvs) within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg503

b:0.0
occ:1.00
 O2A J:ADP501 2.4 0.0 1.0
O3B J:ADP501 2.9 0.0 1.0
PA J:ADP501 3.6 0.0 1.0
CB J:PRO191 3.7 0.0 1.0
O3A J:ADP501 3.8 0.0 1.0
PB J:ADP501 4.0 0.0 1.0
C J:PRO191 4.2 0.0 1.0
CA J:PRO191 4.3 0.0 1.0
N J:GLY192 4.3 0.0 1.0
O5' J:ADP501 4.5 0.0 1.0
O J:PRO191 4.5 0.0 1.0
O1A J:ADP501 4.8 0.0 1.0
C5' J:ADP501 4.8 0.0 1.0
CG J:PRO191 4.9 0.0 1.0
O1B J:ADP501 5.0 0.0 1.0
CA J:GLY192 5.0 0.0 1.0

Reference:

K.Y.S.Hung, S.Klumpe, M.R.Eisele, S.Elsasser, G.Tian, S.Sun, J.A.Moroco, T.C.Cheng, T.Joshi, T.Seibel, D.Van Dalen, X.H.Feng, Y.Lu, H.Ovaa, J.R.Engen, B.H.Lee, T.Rudack, E.Sakata, D.Finley. Allosteric Control of UBP6 and the Proteasome Via A Bidirectional Switch. Nat Commun V. 13 838 2022.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-022-28186-Y
Page generated: Thu Apr 6 19:48:21 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy