Magnesium in PDB 7qoh: Unique Vertex of the PHICRASS001 Virion with C5 Symmetry Imposed

The binding sites of Magnesium atom in the Unique Vertex of the PHICRASS001 Virion with C5 Symmetry Imposed (pdb code 7qoh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Unique Vertex of the PHICRASS001 Virion with C5 Symmetry Imposed, PDB code: 7qoh:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Unique Vertex of the PHICRASS001 Virion with C5 Symmetry Imposed


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Unique Vertex of the PHICRASS001 Virion with C5 Symmetry Imposed within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:48.2 occ:1.00 O A:THR494 2.1 45.4 1.0 O A:ALA299 2.2 47.4 1.0 O A:THR296 2.2 48.2 1.0 O A:PRO491 2.7 46.1 1.0 C A:THR494 3.2 45.4 1.0 C A:ALA299 3.3 47.4 1.0 C A:THR296 3.4 48.2 1.0 CB A:THR494 3.8 45.4 1.0 C A:PRO491 3.9 46.1 1.0 CA A:THR494 3.9 45.4 1.0 N A:ALA299 4.0 47.4 1.0 CA A:GLU297 4.0 48.4 1.0 CA A:ALA299 4.1 47.4 1.0 N A:GLU297 4.2 48.4 1.0 N A:THR494 4.2 45.4 1.0 CB A:ASN300 4.2 46.1 1.0 CG2 A:THR494 4.3 45.4 1.0 N A:MET495 4.3 46.1 1.0 N A:ASN300 4.3 46.1 1.0 OG1 A:THR296 4.3 48.2 1.0 CB A:ALA299 4.4 47.4 1.0 OG1 A:THR301 4.5 48.5 1.0 CA A:THR296 4.5 48.2 1.0 C A:GLU297 4.5 48.4 1.0 CA A:MET495 4.6 46.1 1.0 CA A:ASN300 4.6 46.1 1.0 CA A:PRO491 4.6 46.1 1.0 N A:VAL298 4.7 49.3 1.0 CB A:PRO491 4.8 46.1 1.0 C A:ASN300 4.8 46.1 1.0 N A:THR492 4.9 46.0 1.0 CB A:THR296 4.9 48.2 1.0

Magnesium binding site 2 out of 6 in the Unique Vertex of the PHICRASS001 Virion with C5 Symmetry Imposed


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Unique Vertex of the PHICRASS001 Virion with C5 Symmetry Imposed within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:35.6 occ:1.00 O B:ALA299 2.2 36.1 1.0 O B:THR296 2.2 36.2 1.0 O B:THR494 2.5 37.0 1.0 O B:PRO491 2.7 35.7 1.0 OG1 B:THR494 2.9 37.0 1.0 C B:ALA299 3.2 36.1 1.0 C B:THR296 3.5 36.2 1.0 C B:THR494 3.6 37.0 1.0 C B:PRO491 3.9 35.7 1.0 CB B:ASN300 3.9 35.1 1.0 N B:ALA299 4.0 36.1 1.0 CA B:ALA299 4.1 36.1 1.0 OG1 B:THR296 4.1 36.2 1.0 CB B:THR494 4.1 37.0 1.0 N B:ASN300 4.1 35.1 1.0 CA B:THR494 4.3 37.0 1.0 CA B:GLU297 4.3 37.5 1.0 N B:GLU297 4.3 37.5 1.0 CA B:ASN300 4.3 35.1 1.0 OG1 B:THR301 4.3 36.3 1.0 CB B:ALA299 4.4 36.1 1.0 CA B:THR296 4.4 36.2 1.0 C B:ASN300 4.4 35.1 1.0 N B:THR494 4.4 37.0 1.0 O B:ASN300 4.6 35.1 1.0 CA B:PRO491 4.6 35.7 1.0 OG B:SER496 4.6 35.7 1.0 C B:GLU297 4.7 37.5 1.0 N B:MET495 4.7 37.0 1.0 CB B:PRO491 4.7 35.7 1.0 N B:VAL298 4.8 37.1 1.0 CB B:THR296 4.8 36.2 1.0 N B:THR492 4.9 35.8 1.0 CA B:MET495 4.9 37.0 1.0 N B:THR301 5.0 36.3 1.0

Magnesium binding site 3 out of 6 in the Unique Vertex of the PHICRASS001 Virion with C5 Symmetry Imposed


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Unique Vertex of the PHICRASS001 Virion with C5 Symmetry Imposed within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:40.6 occ:1.00 O C:PRO491 2.1 39.3 1.0 O C:THR494 2.5 37.4 1.0 O C:THR296 2.5 39.1 1.0 C C:PRO491 3.2 39.3 1.0 C C:THR494 3.5 37.4 1.0 C C:THR296 3.5 39.1 1.0 CB C:THR494 3.6 37.4 1.0 CA C:PRO491 3.7 39.3 1.0 CB C:PRO491 3.7 39.3 1.0 N C:ASN300 3.8 39.7 1.0 CB C:ALA299 4.0 40.4 1.0 CA C:THR494 4.0 37.4 1.0 OG1 C:THR296 4.1 39.1 1.0 CA C:THR296 4.2 39.1 1.0 CG2 C:THR494 4.2 37.4 1.0 N C:ALA299 4.2 40.4 1.0 N C:THR494 4.2 37.4 1.0 CB C:ASN300 4.3 39.7 1.0 N C:THR492 4.4 40.5 1.0 N C:GLU297 4.4 40.8 1.0 CA C:ALA299 4.5 40.4 1.0 N C:MET495 4.5 37.1 1.0 CA C:ASN300 4.6 39.7 1.0 C C:ALA299 4.6 40.4 1.0 CA C:GLU297 4.7 40.8 1.0 OG1 C:THR494 4.7 37.4 1.0 ND2 C:ASN300 4.7 39.7 1.0 N C:VAL298 4.8 41.9 1.0 CA C:THR492 4.8 40.5 1.0 CB C:THR296 4.8 39.1 1.0 CA C:MET495 4.9 37.1 1.0 C C:GLU297 4.9 40.8 1.0

Magnesium binding site 4 out of 6 in the Unique Vertex of the PHICRASS001 Virion with C5 Symmetry Imposed


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Unique Vertex of the PHICRASS001 Virion with C5 Symmetry Imposed within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg601 b:40.5 occ:1.00 O D:ALA299 2.1 40.0 1.0 O D:THR494 2.3 40.5 1.0 O D:PRO491 2.4 41.7 1.0 O D:THR296 2.4 41.3 1.0 C D:ALA299 3.1 40.0 1.0 C D:THR296 3.4 41.3 1.0 C D:THR494 3.4 40.5 1.0 N D:ALA299 3.6 40.0 1.0 C D:PRO491 3.6 41.7 1.0 CA D:ALA299 3.7 40.0 1.0 CB D:ALA299 3.8 40.0 1.0 CB D:THR494 3.8 40.5 1.0 CA D:THR296 4.0 41.3 1.0 CA D:THR494 4.0 40.5 1.0 N D:ASN300 4.1 39.4 1.0 N D:THR494 4.2 40.5 1.0 CB D:ASN300 4.2 39.4 1.0 CA D:PRO491 4.4 41.7 1.0 CB D:PRO491 4.4 41.7 1.0 ND2 D:ASN300 4.4 39.4 1.0 CB D:THR296 4.4 41.3 1.0 N D:GLU297 4.5 41.9 1.0 OG1 D:THR301 4.5 40.2 1.0 N D:MET495 4.5 39.3 1.0 N D:THR492 4.6 42.5 1.0 CG D:ASN300 4.6 39.4 1.0 N D:VAL298 4.6 42.4 1.0 CA D:ASN300 4.6 39.4 1.0 CG2 D:THR494 4.7 40.5 1.0 CA D:THR492 4.7 42.5 1.0 CA D:GLU297 4.8 41.9 1.0 OG1 D:THR494 4.8 40.5 1.0 C D:VAL298 4.8 42.4 1.0 CA D:MET495 4.9 39.3 1.0 C D:ASN300 4.9 39.4 1.0 C D:THR492 5.0 42.5 1.0

Magnesium binding site 5 out of 6 in the Unique Vertex of the PHICRASS001 Virion with C5 Symmetry Imposed


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Unique Vertex of the PHICRASS001 Virion with C5 Symmetry Imposed within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg601 b:45.1 occ:1.00 OG1 E:THR494 2.1 46.3 1.0 O E:THR296 2.2 43.4 1.0 O E:THR494 2.2 46.3 1.0 O E:ALA299 2.4 46.1 1.0 O E:PRO491 3.0 46.9 1.0 C E:THR494 3.1 46.3 1.0 CB E:THR494 3.4 46.3 1.0 C E:THR296 3.4 43.4 1.0 C E:ALA299 3.6 46.1 1.0 CA E:THR494 3.7 46.3 1.0 O E:ASN300 4.0 45.5 1.0 N E:THR494 4.1 46.3 1.0 N E:MET495 4.1 45.9 1.0 CA E:THR296 4.2 43.4 1.0 C E:PRO491 4.2 46.9 1.0 CB E:ASN300 4.2 45.5 1.0 CB E:THR296 4.2 43.4 1.0 C E:ASN300 4.2 45.5 1.0 N E:GLU297 4.4 45.4 1.0 N E:ASN300 4.5 45.5 1.0 CA E:MET495 4.5 45.9 1.0 CA E:ASN300 4.5 45.5 1.0 N E:ALA299 4.5 46.1 1.0 CA E:GLU297 4.5 45.4 1.0 CG2 E:THR494 4.5 46.3 1.0 CA E:ALA299 4.6 46.1 1.0 OG E:SER496 4.7 44.3 1.0 OG1 E:THR296 4.8 43.4 1.0 C E:MET495 4.8 45.9 1.0 N E:SER496 4.9 44.3 1.0 CA E:PRO491 4.9 46.9 1.0 N E:THR301 4.9 46.0 1.0

Magnesium binding site 6 out of 6 in the Unique Vertex of the PHICRASS001 Virion with C5 Symmetry Imposed


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Unique Vertex of the PHICRASS001 Virion with C5 Symmetry Imposed within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg601 b:55.1 occ:1.00 O F:THR494 2.1 54.9 1.0 O F:THR296 2.1 54.9 1.0 O F:ALA299 2.2 57.1 1.0 OG1 F:THR494 2.4 54.9 1.0 O F:PRO491 2.6 56.3 1.0 C F:THR494 3.1 54.9 1.0 C F:ALA299 3.3 57.1 1.0 C F:THR296 3.3 54.9 1.0 CB F:THR494 3.4 54.9 1.0 CA F:THR494 3.7 54.9 1.0 C F:PRO491 3.7 56.3 1.0 N F:THR494 4.0 54.9 1.0 N F:ALA299 4.0 57.1 1.0 CA F:THR296 4.0 54.9 1.0 CB F:ASN300 4.1 55.2 1.0 CA F:ALA299 4.1 57.1 1.0 N F:MET495 4.2 53.7 1.0 N F:ASN300 4.3 55.2 1.0 N F:GLU297 4.3 57.3 1.0 CA F:PRO491 4.3 56.3 1.0 CB F:THR296 4.4 54.9 1.0 CB F:ALA299 4.5 57.1 1.0 O F:ASN300 4.5 55.2 1.0 CA F:ASN300 4.5 55.2 1.0 CA F:GLU297 4.5 57.3 1.0 OG1 F:THR301 4.5 56.9 1.0 C F:ASN300 4.5 55.2 1.0 CA F:MET495 4.5 53.7 1.0 C F:GLU297 4.6 57.3 1.0 CB F:PRO491 4.6 56.3 1.0 CG2 F:THR494 4.7 54.9 1.0 OG F:SER496 4.7 53.1 1.0 N F:THR492 4.8 57.0 1.0 N F:VAL298 4.8 58.7 1.0

O.W.Bayfield, A.N.Shkoporov, N.Yutin, E.V.Khokhlova, J.L.R.Smith, D.E.D.P.Hawkins, E.V.Koonin, C.Hill, A.A.Antson. Structural Atlas of A Human Gut Crassvirus To Be Published.