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Magnesium in PDB 7qou: A Mutant of the Nitrile Hydratase From Geobacillus Pallidus Having Enhanced Thermostability

Enzymatic activity of A Mutant of the Nitrile Hydratase From Geobacillus Pallidus Having Enhanced Thermostability

All present enzymatic activity of A Mutant of the Nitrile Hydratase From Geobacillus Pallidus Having Enhanced Thermostability:
4.2.1.84;

Protein crystallography data

The structure of A Mutant of the Nitrile Hydratase From Geobacillus Pallidus Having Enhanced Thermostability, PDB code: 7qou was solved by J.C.Van Wyk, D.A.Cowan, M.J.Danson, T.L.Tsekoa, M.F.Sayed, B.T.Sewell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 74.95 / 1.30
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 106.084, 106.084, 82.975, 90, 90, 90
R / Rfree (%) 15.3 / 18.2

Other elements in 7qou:

The structure of A Mutant of the Nitrile Hydratase From Geobacillus Pallidus Having Enhanced Thermostability also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Cobalt (Co) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the A Mutant of the Nitrile Hydratase From Geobacillus Pallidus Having Enhanced Thermostability (pdb code 7qou). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the A Mutant of the Nitrile Hydratase From Geobacillus Pallidus Having Enhanced Thermostability, PDB code: 7qou:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7qou

Go back to Magnesium Binding Sites List in 7qou
Magnesium binding site 1 out of 2 in the A Mutant of the Nitrile Hydratase From Geobacillus Pallidus Having Enhanced Thermostability


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of A Mutant of the Nitrile Hydratase From Geobacillus Pallidus Having Enhanced Thermostability within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:17.0
occ:1.00
OD1 B:ASP218 2.8 12.1 1.0
O A:ILE173 2.8 9.7 1.0
N A:SER171 2.9 9.3 1.0
OG A:SER171 3.2 9.9 1.0
CA A:SER169 3.2 9.8 1.0
C A:SER169 3.2 9.8 1.0
N A:SER170 3.2 9.2 1.0
O A:SER171 3.3 10.3 1.0
CA A:SER171 3.6 8.4 1.0
CG B:ASP218 3.6 11.4 1.0
C A:SER171 3.6 9.5 1.0
C A:ILE173 3.7 9.8 1.0
CE1 A:PHE175 3.8 11.4 1.0
CB A:SER171 3.8 9.7 1.0
O A:SER169 3.9 11.8 1.0
N A:ILE173 3.9 9.4 1.0
CB A:ILE173 3.9 9.7 1.0
C A:SER170 3.9 8.7 1.0
O A:ASP168 4.0 9.9 1.0
CB A:SER169 4.0 10.5 1.0
CA A:ILE173 4.1 10.0 1.0
CB B:ASP218 4.1 9.3 1.0
CA A:SER170 4.1 8.6 1.0
NH1 A:ARG174 4.2 11.7 1.0
N A:SER169 4.3 8.4 1.0
CZ A:PHE175 4.4 11.6 1.0
OG A:SER170 4.5 10.2 1.0
N A:GLU172 4.5 9.4 1.0
OD2 B:ASP218 4.5 10.1 1.0
C A:ASP168 4.6 7.8 1.0
OG A:SER169 4.7 13.6 1.0
C A:GLU172 4.7 9.6 1.0
CD1 A:PHE175 4.7 10.9 1.0
CG2 A:ILE173 4.8 11.1 1.0
N A:ARG174 4.9 10.4 1.0
CG1 A:ILE173 4.9 10.1 1.0
CB A:SER170 5.0 10.2 1.0

Magnesium binding site 2 out of 2 in 7qou

Go back to Magnesium Binding Sites List in 7qou
Magnesium binding site 2 out of 2 in the A Mutant of the Nitrile Hydratase From Geobacillus Pallidus Having Enhanced Thermostability


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of A Mutant of the Nitrile Hydratase From Geobacillus Pallidus Having Enhanced Thermostability within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg304

b:36.4
occ:1.00
OD2 A:ASP108 4.0 11.8 1.0
OD1 A:ASP108 4.0 12.7 1.0
OE2 A:GLU183 4.1 49.6 1.0
CG A:ASP108 4.5 11.5 1.0
NE2 A:GLN180 4.8 13.1 1.0

Reference:

J.C.Van Wyk, D.A.Cowan, M.J.Danson, T.L.Tsekoa, M.F.Sayed, B.T.Sewell. A Mutant of the Nitrile Hydratase From Geobacillus Pallidus Having Enhanced Thermostability To Be Published.
Page generated: Thu Oct 3 05:15:36 2024

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