Magnesium in PDB 7r8v: Cryo-Em Structure of the Adp State Actin Filament

The binding sites of Magnesium atom in the Cryo-Em Structure of the Adp State Actin Filament (pdb code 7r8v). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Cryo-Em Structure of the Adp State Actin Filament, PDB code: 7r8v:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Cryo-Em Structure of the Adp State Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Adp State Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:23.4 occ:1.00 O3B B:ADP401 2.0 27.8 1.0 PB B:ADP401 3.4 27.8 1.0 OE1 B:GLN137 3.5 32.5 1.0 O2B B:ADP401 3.8 27.8 1.0 CD B:GLN137 3.9 32.5 1.0 NE2 B:GLN137 4.0 32.5 1.0 OD1 B:ASP11 4.1 34.1 1.0 OD2 B:ASP11 4.1 34.1 1.0 OD2 B:ASP154 4.3 25.1 1.0 O1B B:ADP401 4.3 27.8 1.0 O3A B:ADP401 4.4 27.8 1.0 CG B:ASP11 4.5 34.1 1.0 CA B:GLY13 4.5 27.1 1.0 O2A B:ADP401 4.6 27.8 1.0 NZ B:LYS18 4.7 30.7 1.0 CG B:GLN137 4.8 32.5 1.0 CG2 B:VAL339 4.9 31.0 1.0 CA B:GLY156 5.0 23.9 1.0

Magnesium binding site 2 out of 5 in the Cryo-Em Structure of the Adp State Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Adp State Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:23.4 occ:1.00 O3B A:ADP401 2.0 27.8 1.0 PB A:ADP401 3.4 27.8 1.0 OE1 A:GLN137 3.5 32.5 1.0 O2B A:ADP401 3.8 27.8 1.0 CD A:GLN137 3.9 32.5 1.0 NE2 A:GLN137 4.0 32.5 1.0 OD1 A:ASP11 4.1 34.1 1.0 OD2 A:ASP11 4.1 34.1 1.0 OD2 A:ASP154 4.3 25.1 1.0 O1B A:ADP401 4.3 27.8 1.0 O3A A:ADP401 4.4 27.8 1.0 CG A:ASP11 4.5 34.1 1.0 CA A:GLY13 4.5 27.1 1.0 O2A A:ADP401 4.6 27.8 1.0 NZ A:LYS18 4.7 30.7 1.0 CG A:GLN137 4.8 32.5 1.0 CG2 A:VAL339 4.9 31.0 1.0 CA A:GLY156 5.0 23.9 1.0

Magnesium binding site 3 out of 5 in the Cryo-Em Structure of the Adp State Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of the Adp State Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:23.4 occ:1.00 O3B C:ADP401 2.0 27.8 1.0 PB C:ADP401 3.4 27.8 1.0 OE1 C:GLN137 3.5 32.5 1.0 O2B C:ADP401 3.8 27.8 1.0 CD C:GLN137 3.9 32.5 1.0 NE2 C:GLN137 4.0 32.5 1.0 OD1 C:ASP11 4.1 34.1 1.0 OD2 C:ASP11 4.1 34.1 1.0 OD2 C:ASP154 4.3 25.1 1.0 O1B C:ADP401 4.3 27.8 1.0 O3A C:ADP401 4.4 27.8 1.0 CG C:ASP11 4.5 34.1 1.0 CA C:GLY13 4.5 27.1 1.0 O2A C:ADP401 4.6 27.8 1.0 NZ C:LYS18 4.7 30.7 1.0 CG C:GLN137 4.8 32.5 1.0 CG2 C:VAL339 4.9 31.0 1.0 CA C:GLY156 5.0 23.9 1.0

Magnesium binding site 4 out of 5 in the Cryo-Em Structure of the Adp State Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of the Adp State Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:23.4 occ:1.00 O3B D:ADP401 2.0 27.8 1.0 PB D:ADP401 3.4 27.8 1.0 OE1 D:GLN137 3.5 32.5 1.0 O2B D:ADP401 3.8 27.8 1.0 CD D:GLN137 3.9 32.5 1.0 NE2 D:GLN137 4.0 32.5 1.0 OD1 D:ASP11 4.1 34.1 1.0 OD2 D:ASP11 4.1 34.1 1.0 OD2 D:ASP154 4.3 25.1 1.0 O1B D:ADP401 4.3 27.8 1.0 O3A D:ADP401 4.4 27.8 1.0 CG D:ASP11 4.5 34.1 1.0 CA D:GLY13 4.5 27.1 1.0 O2A D:ADP401 4.6 27.8 1.0 NZ D:LYS18 4.7 30.7 1.0 CG D:GLN137 4.8 32.5 1.0 CG2 D:VAL339 4.9 31.0 1.0 CA D:GLY156 5.0 23.9 1.0

Magnesium binding site 5 out of 5 in the Cryo-Em Structure of the Adp State Actin Filament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of the Adp State Actin Filament within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:23.4 occ:1.00 O3B E:ADP401 2.0 27.8 1.0 PB E:ADP401 3.4 27.8 1.0 OE1 E:GLN137 3.5 32.5 1.0 O2B E:ADP401 3.8 27.8 1.0 CD E:GLN137 3.9 32.5 1.0 NE2 E:GLN137 4.0 32.5 1.0 OD1 E:ASP11 4.1 34.1 1.0 OD2 E:ASP11 4.1 34.1 1.0 OD2 E:ASP154 4.3 25.1 1.0 O1B E:ADP401 4.3 27.8 1.0 O3A E:ADP401 4.4 27.8 1.0 CG E:ASP11 4.5 34.1 1.0 CA E:GLY13 4.5 27.1 1.0 O2A E:ADP401 4.6 27.8 1.0 NZ E:LYS18 4.7 30.7 1.0 CG E:GLN137 4.8 32.5 1.0 CG2 E:VAL339 4.9 31.0 1.0 CA E:GLY156 5.0 23.9 1.0

R.Gong, F.Jiang, Z.G.Moreland, M.J.Reynolds, P.S.Gurel, A.Shams, M.R.Bowl, J.E.Bird, G.M.Alushin. Structural Basis For Tunable Control of Actin Dynamics By Myosin-15 in Mechanosensory Stereocilia Biorxiv 2021.
DOI: 10.1101/2021.07.09.451843