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Magnesium in PDB 7r94: T-Plastin-F-Actin Complex

Magnesium Binding Sites:

The binding sites of Magnesium atom in the T-Plastin-F-Actin Complex (pdb code 7r94). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the T-Plastin-F-Actin Complex, PDB code: 7r94:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 7r94

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Magnesium binding site 1 out of 5 in the T-Plastin-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of T-Plastin-F-Actin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg402

b:26.1
occ:1.00
O3B C:ADP401 2.0 38.4 1.0
PB C:ADP401 3.4 38.4 1.0
O1B C:ADP401 3.9 38.4 1.0
O2A C:ADP401 3.9 38.4 1.0
OD2 C:ASP11 4.0 29.3 1.0
O3A C:ADP401 4.3 38.4 1.0
OE1 C:GLN137 4.3 29.9 1.0
OD1 C:ASP11 4.4 29.3 1.0
O2B C:ADP401 4.4 38.4 1.0
NZ C:LYS18 4.4 38.4 1.0
CD C:GLN137 4.6 29.9 1.0
OD2 C:ASP154 4.6 29.0 1.0
CA C:GLY13 4.6 29.3 1.0
CG C:ASP11 4.6 29.3 1.0
PA C:ADP401 4.6 38.4 1.0
CG2 C:VAL339 4.6 24.5 1.0
OD1 C:ASP154 4.8 29.0 1.0
CA C:GLY156 4.9 27.5 1.0
NE2 C:GLN137 4.9 29.9 1.0
CB C:VAL339 5.0 24.5 1.0

Magnesium binding site 2 out of 5 in 7r94

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Magnesium binding site 2 out of 5 in the T-Plastin-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of T-Plastin-F-Actin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg402

b:27.6
occ:1.00
O2B B:ADP401 1.8 38.4 1.0
PB B:ADP401 3.3 38.4 1.0
O3B B:ADP401 3.9 38.4 1.0
OE1 B:GLN137 4.1 30.3 1.0
O3A B:ADP401 4.1 38.4 1.0
OD2 B:ASP11 4.2 30.6 1.0
O1B B:ADP401 4.3 38.4 1.0
CD B:GLN137 4.4 30.3 1.0
OD1 B:ASP11 4.4 30.6 1.0
OD1 B:ASP154 4.5 29.8 1.0
NE2 B:GLN137 4.6 30.3 1.0
NZ B:LYS18 4.6 20.3 1.0
CA B:GLY156 4.6 28.1 1.0
CG2 B:VAL339 4.7 23.4 1.0
CA B:GLY13 4.7 29.7 1.0
CG B:ASP11 4.7 30.6 1.0
PA B:ADP401 4.9 38.4 1.0
O1A B:ADP401 4.9 38.4 1.0
OD2 B:ASP154 4.9 29.8 1.0
O2A B:ADP401 5.0 38.4 1.0

Magnesium binding site 3 out of 5 in 7r94

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Magnesium binding site 3 out of 5 in the T-Plastin-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of T-Plastin-F-Actin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:25.1
occ:1.00
O3B A:ADP401 1.9 35.0 1.0
PB A:ADP401 3.3 35.0 1.0
O2B A:ADP401 3.8 35.0 1.0
OE1 A:GLN137 3.9 28.5 1.0
O3A A:ADP401 4.2 35.0 1.0
CD A:GLN137 4.2 28.5 1.0
O1B A:ADP401 4.2 35.0 1.0
OD1 A:ASP11 4.3 29.4 1.0
NE2 A:GLN137 4.4 28.5 1.0
CA A:GLY13 4.4 27.2 1.0
OD1 A:ASP154 4.5 28.3 1.0
O2A A:ADP401 4.6 35.0 1.0
NZ A:LYS18 4.6 21.5 1.0
OD2 A:ASP11 4.6 29.4 1.0
CA A:GLY156 4.8 25.7 1.0
PA A:ADP401 4.9 35.0 1.0
CG A:ASP11 4.9 29.4 1.0
CG2 A:VAL339 5.0 22.5 1.0

Magnesium binding site 4 out of 5 in 7r94

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Magnesium binding site 4 out of 5 in the T-Plastin-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of T-Plastin-F-Actin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg402

b:26.7
occ:1.00
O3B D:ADP401 2.0 38.4 1.0
PB D:ADP401 3.4 38.4 1.0
O2A D:ADP401 3.7 38.4 1.0
O3A D:ADP401 3.9 38.4 1.0
O2B D:ADP401 4.1 38.4 1.0
OD2 D:ASP11 4.1 29.1 1.0
OE1 D:GLN137 4.3 29.1 1.0
PA D:ADP401 4.3 38.4 1.0
NZ D:LYS18 4.4 21.5 1.0
OD1 D:ASP154 4.4 27.3 1.0
O1B D:ADP401 4.4 38.4 1.0
OD1 D:ASP11 4.6 29.1 1.0
CA D:GLY13 4.6 30.7 1.0
CD D:GLN137 4.6 29.1 1.0
CA D:GLY156 4.7 27.7 1.0
CG D:ASP11 4.8 29.1 1.0
CG2 D:VAL339 4.8 24.4 1.0
NE2 D:GLN137 4.8 29.1 1.0
O1A D:ADP401 4.9 38.4 1.0

Magnesium binding site 5 out of 5 in 7r94

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Magnesium binding site 5 out of 5 in the T-Plastin-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of T-Plastin-F-Actin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg402

b:26.3
occ:1.00
O3B E:ADP401 1.9 28.6 1.0
PB E:ADP401 3.3 28.6 1.0
O2B E:ADP401 3.9 28.6 1.0
O3A E:ADP401 4.0 28.6 1.0
OE1 E:GLN137 4.0 30.9 1.0
O2A E:ADP401 4.2 28.6 1.0
OD2 E:ASP11 4.4 31.7 1.0
O1B E:ADP401 4.4 28.6 1.0
CD E:GLN137 4.4 30.9 1.0
OD1 E:ASP154 4.4 28.2 1.0
OD1 E:ASP11 4.5 31.7 1.0
CA E:GLY13 4.5 31.6 1.0
NZ E:LYS18 4.5 27.7 1.0
NE2 E:GLN137 4.6 30.9 1.0
PA E:ADP401 4.6 28.6 1.0
CA E:GLY156 4.6 27.4 1.0
CG E:ASP11 4.9 31.7 1.0

Reference:

L.Mei, M.J.Reynolds, D.Garbett, R.Gong, T.Meyer, G.M.Alushin. Structural Mechanism For Bidirectional Actin Cross-Linking By T-Plastin. Proc.Natl.Acad.Sci.Usa V. 119 70119 2022.
ISSN: ESSN 1091-6490
PubMed: 36067297
DOI: 10.1073/PNAS.2205370119
Page generated: Thu Oct 3 07:34:04 2024

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