Atomistry » Magnesium » PDB 7riy-7rut » 7rsc
Atomistry »
  Magnesium »
    PDB 7riy-7rut »
      7rsc »

Magnesium in PDB 7rsc: uc(Nmr)-Driven Structure of the KRAS4B-G12D "Alpha-Alpha" Dimer on A Lipid Bilayer Nanodisc

Magnesium Binding Sites:

The binding sites of Magnesium atom in the uc(Nmr)-Driven Structure of the KRAS4B-G12D "Alpha-Alpha" Dimer on A Lipid Bilayer Nanodisc (pdb code 7rsc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the uc(Nmr)-Driven Structure of the KRAS4B-G12D "Alpha-Alpha" Dimer on A Lipid Bilayer Nanodisc, PDB code: 7rsc:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7rsc

Go back to Magnesium Binding Sites List in 7rsc
Magnesium binding site 1 out of 2 in the uc(Nmr)-Driven Structure of the KRAS4B-G12D "Alpha-Alpha" Dimer on A Lipid Bilayer Nanodisc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of uc(Nmr)-Driven Structure of the KRAS4B-G12D "Alpha-Alpha" Dimer on A Lipid Bilayer Nanodisc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg202

b:10.0
occ:1.00
O3G A:GSP201 1.4 10.0 1.0
OD2 A:ASP57 1.6 10.0 1.0
OG A:SER17 1.7 10.0 1.0
OG1 A:THR35 1.7 10.0 1.0
HG A:SER17 2.1 10.0 1.0
HG1 A:THR35 2.5 10.0 1.0
CB A:THR35 2.7 10.0 1.0
CG A:ASP57 2.7 10.0 1.0
PG A:GSP201 2.9 10.0 1.0
CB A:SER17 3.0 10.0 1.0
O2B A:GSP201 3.0 10.0 1.0
OD1 A:ASP57 3.3 10.0 1.0
H A:THR35 3.5 10.0 1.0
CG2 A:THR35 3.5 10.0 1.0
H A:SER17 3.7 10.0 1.0
O2G A:GSP201 3.7 10.0 1.0
O3B A:GSP201 3.9 10.0 1.0
S1G A:GSP201 3.9 10.0 1.0
CB A:ASP57 3.9 10.0 1.0
CA A:THR35 3.9 10.0 1.0
PB A:GSP201 3.9 10.0 1.0
CA A:SER17 4.0 10.0 1.0
N A:THR35 4.1 10.0 1.0
N A:SER17 4.1 10.0 1.0
O3A A:GSP201 4.3 10.0 1.0
O A:THR58 4.4 10.0 1.0
O A:THR35 4.4 10.0 1.0
O1A A:GSP201 4.5 10.0 1.0
C A:THR35 4.6 10.0 1.0
O2A A:GSP201 4.7 10.0 1.0
PA A:GSP201 4.7 10.0 1.0
O A:ASP33 4.8 10.0 1.0
HAC A:GSP201 4.9 10.0 1.0
CB A:LYS16 5.0 10.0 1.0
CE A:LYS16 5.0 10.0 1.0

Magnesium binding site 2 out of 2 in 7rsc

Go back to Magnesium Binding Sites List in 7rsc
Magnesium binding site 2 out of 2 in the uc(Nmr)-Driven Structure of the KRAS4B-G12D "Alpha-Alpha" Dimer on A Lipid Bilayer Nanodisc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of uc(Nmr)-Driven Structure of the KRAS4B-G12D "Alpha-Alpha" Dimer on A Lipid Bilayer Nanodisc within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg202

b:10.0
occ:1.00
O3G B:GSP201 1.4 10.0 1.0
OD2 B:ASP57 1.5 10.0 1.0
OG B:SER17 1.7 10.0 1.0
OG1 B:THR35 1.7 10.0 1.0
HG B:SER17 2.2 10.0 1.0
CG B:ASP57 2.4 10.0 1.0
HG1 B:THR35 2.5 10.0 1.0
CB B:THR35 2.6 10.0 1.0
OD1 B:ASP57 2.7 10.0 1.0
PG B:GSP201 2.9 10.0 1.0
CB B:SER17 3.0 10.0 1.0
H B:THR35 3.4 10.0 1.0
CG2 B:THR35 3.6 10.0 1.0
O3B B:GSP201 3.6 10.0 1.0
CA B:THR35 3.8 10.0 1.0
CB B:ASP57 3.8 10.0 1.0
CA B:SER17 3.8 10.0 1.0
O2G B:GSP201 3.8 10.0 1.0
S1G B:GSP201 3.9 10.0 1.0
OD2 B:ASP33 4.0 10.0 1.0
N B:THR35 4.0 10.0 1.0
O B:THR35 4.2 10.0 1.0
O B:ASP33 4.2 10.0 1.0
N B:SER17 4.3 10.0 1.0
H B:SER17 4.3 10.0 1.0
C B:THR35 4.4 10.0 1.0
O B:ASP57 4.6 10.0 1.0
C B:ASP57 4.8 10.0 1.0
CA B:ASP57 4.9 10.0 1.0
O B:THR58 5.0 10.0 1.0
HAC B:GSP201 5.0 10.0 1.0

Reference:

K.Y.Lee, M.Enomoto, T.Gebregiworgis, G.M.C.Gasmi-Seabrook, M.Ikura, C.B.Marshall. Oncogenic Kras G12D Mutation Promotes Dimerization Through A Second, Phosphatidylserine-Dependent Interface: A Model For Kras Oligomerization Chem Sci 2021.
ISSN: ESSN 2041-6539
DOI: 10.1039/D1SC03484G
Page generated: Thu Oct 3 08:06:38 2024

Last articles

Zn in 1MC5
Zn in 1MFM
Zn in 1MA0
Zn in 1MED
Zn in 1MEA
Zn in 1MBX
Zn in 1MA3
Zn in 1M9O
Zn in 1M9R
Zn in 1M9Q
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy