Magnesium in PDB 7rse: uc(Nmr)-Driven Structure of the KRAS4B-G12D "Alpha-Beta" Dimer on A Lipid Bilayer Nanodisc

Magnesium Binding Sites:

The binding sites of Magnesium atom in the uc(Nmr)-Driven Structure of the KRAS4B-G12D "Alpha-Beta" Dimer on A Lipid Bilayer Nanodisc (pdb code 7rse). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the uc(Nmr)-Driven Structure of the KRAS4B-G12D "Alpha-Beta" Dimer on A Lipid Bilayer Nanodisc, PDB code: 7rse:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7rse

Go back to Magnesium Binding Sites List in 7rse
Magnesium binding site 1 out of 2 in the uc(Nmr)-Driven Structure of the KRAS4B-G12D "Alpha-Beta" Dimer on A Lipid Bilayer Nanodisc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of uc(Nmr)-Driven Structure of the KRAS4B-G12D "Alpha-Beta" Dimer on A Lipid Bilayer Nanodisc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg202

b:10.0
occ:1.00
O3G A:GSP201 1.4 10.0 1.0
OD2 A:ASP57 1.6 10.0 1.0
OG A:SER17 1.7 10.0 1.0
OG1 A:THR35 1.8 10.0 1.0
HG A:SER17 2.1 10.0 1.0
O2B A:GSP201 2.6 10.0 1.0
HG1 A:THR35 2.6 10.0 1.0
CB A:THR35 2.7 10.0 1.0
CG A:ASP57 2.8 10.0 1.0
PG A:GSP201 2.9 10.0 1.0
CB A:SER17 3.0 10.0 1.0
OD1 A:ASP57 3.5 10.0 1.0
H A:SER17 3.5 10.0 1.0
CG2 A:THR35 3.5 10.0 1.0
H A:THR35 3.5 10.0 1.0
PB A:GSP201 3.7 10.0 1.0
N A:SER17 3.7 10.0 1.0
CA A:SER17 3.8 10.0 1.0
O3B A:GSP201 3.8 10.0 1.0
O2G A:GSP201 3.8 10.0 1.0
CB A:ASP57 3.9 10.0 1.0
O A:ASP33 4.0 10.0 1.0
S1G A:GSP201 4.0 10.0 1.0
CA A:THR35 4.0 10.0 1.0
N A:THR35 4.1 10.0 1.0
OD2 A:ASP33 4.1 10.0 1.0
O A:THR58 4.3 10.0 1.0
O3A A:GSP201 4.4 10.0 1.0
O1A A:GSP201 4.4 10.0 1.0
CB A:LYS16 4.6 10.0 1.0
C A:LYS16 4.6 10.0 1.0
PA A:GSP201 4.8 10.0 1.0
C A:THR35 4.9 10.0 1.0
O A:THR35 5.0 10.0 1.0
O1B A:GSP201 5.0 10.0 1.0

Magnesium binding site 2 out of 2 in 7rse

Go back to Magnesium Binding Sites List in 7rse
Magnesium binding site 2 out of 2 in the uc(Nmr)-Driven Structure of the KRAS4B-G12D "Alpha-Beta" Dimer on A Lipid Bilayer Nanodisc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of uc(Nmr)-Driven Structure of the KRAS4B-G12D "Alpha-Beta" Dimer on A Lipid Bilayer Nanodisc within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg202

b:10.0
occ:1.00
O3G B:GSP201 1.4 10.0 1.0
OG B:SER17 1.7 10.0 1.0
HG B:SER17 2.2 10.0 1.0
O2B B:GSP201 2.4 10.0 1.0
PG B:GSP201 2.9 10.0 1.0
CB B:SER17 2.9 10.0 1.0
O2A B:GSP201 3.1 10.0 1.0
OD2 B:ASP57 3.2 10.0 1.0
PB B:GSP201 3.6 10.0 1.0
O3B B:GSP201 3.7 10.0 1.0
O2G B:GSP201 3.7 10.0 1.0
H B:SER17 3.8 10.0 1.0
S1G B:GSP201 4.0 10.0 1.0
CA B:SER17 4.1 10.0 1.0
PA B:GSP201 4.1 10.0 1.0
N B:SER17 4.2 10.0 1.0
O3A B:GSP201 4.3 10.0 1.0
CG B:ASP57 4.4 10.0 1.0
O1A B:GSP201 4.5 10.0 1.0
H B:THR35 4.8 10.0 1.0
O1B B:GSP201 4.8 10.0 1.0
OD1 B:ASP57 4.9 10.0 1.0

Reference:

K.Y.Lee, M.Enomoto, T.Gebregiworgis, G.M.C.Gasmi-Seabrook, M.Ikura, C.B.Marshall. Oncogenic Kras G12D Mutation Promotes Dimerization Through A Second, Phosphatidylserine-Dependent Interface: A Model For Kras Oligomerization Chem Sci 2021.
ISSN: ESSN 2041-6539
DOI: 10.1039/D1SC03484G
Page generated: Fri Sep 24 15:51:16 2021

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy