Magnesium in PDB 7ruc: Metazoan Pre-Targeting Get Complex with Sgta (Cbuggs)

The structure of Metazoan Pre-Targeting Get Complex with Sgta (Cbuggs) also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Magnesium atom in the Metazoan Pre-Targeting Get Complex with Sgta (Cbuggs) (pdb code 7ruc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Metazoan Pre-Targeting Get Complex with Sgta (Cbuggs), PDB code: 7ruc:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Metazoan Pre-Targeting Get Complex with Sgta (Cbuggs)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Metazoan Pre-Targeting Get Complex with Sgta (Cbuggs) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:107.8 occ:1.00 O2B A:ATP401 1.8 105.1 1.0 O2G A:ATP401 1.8 105.1 1.0 O3B A:ATP401 2.3 105.1 1.0 OG1 A:THR45 2.4 108.2 1.0 PB A:ATP401 2.4 105.1 1.0 PG A:ATP401 2.5 105.1 1.0 O3G A:ATP401 3.2 105.1 1.0 O1B A:ATP401 3.2 105.1 1.0 NZ B:LYS39 3.7 107.7 1.0 CB A:THR45 3.7 108.2 1.0 O3A A:ATP401 3.7 105.1 1.0 O1G A:ATP401 3.8 105.1 1.0 OD1 A:ASP160 3.9 121.7 1.0 N A:THR45 3.9 108.2 1.0 NZ A:LYS44 4.0 108.0 1.0 OD2 A:ASP160 4.2 121.7 1.0 O2A A:ATP401 4.3 105.1 1.0 CA A:THR45 4.4 108.2 1.0 CE A:LYS44 4.4 108.0 1.0 CG A:ASP160 4.5 121.7 1.0 CB A:LYS44 4.5 108.0 1.0 PA A:ATP401 4.6 105.1 1.0 CG2 A:THR45 4.7 108.2 1.0 OD1 A:ASN72 4.8 112.5 1.0 C A:LYS44 4.8 108.0 1.0 N A:LYS44 4.9 108.0 1.0 O1A A:ATP401 4.9 105.1 1.0 CA A:LYS44 5.0 108.0 1.0

Magnesium binding site 2 out of 2 in the Metazoan Pre-Targeting Get Complex with Sgta (Cbuggs)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Metazoan Pre-Targeting Get Complex with Sgta (Cbuggs) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg403 b:114.7 occ:1.00 O2G B:ATP402 1.9 103.9 1.0 O2B B:ATP402 1.9 103.9 1.0 OG1 B:THR45 2.0 106.8 1.0 PB B:ATP402 3.0 103.9 1.0 PG B:ATP402 3.1 103.9 1.0 O3B B:ATP402 3.2 103.9 1.0 CB B:THR45 3.4 106.8 1.0 OD2 B:ASP160 3.4 122.0 1.0 ND2 B:ASN68 3.6 128.0 1.0 OD1 B:ASP160 3.7 122.0 1.0 O1B B:ATP402 3.9 103.9 1.0 N B:THR45 3.9 106.8 1.0 ND2 B:ASN72 3.9 113.2 1.0 O1G B:ATP402 4.0 103.9 1.0 CG B:ASP160 4.0 122.0 1.0 NZ A:LYS39 4.0 108.0 1.0 O3G B:ATP402 4.1 103.9 1.0 CA B:THR45 4.1 106.8 1.0 O3A B:ATP402 4.2 103.9 1.0 CG2 B:THR45 4.3 106.8 1.0 CE B:LYS44 4.5 107.5 1.0 O2A B:ATP402 4.5 103.9 1.0 NZ B:LYS44 4.6 107.5 1.0 CB B:ASN72 4.7 113.2 1.0 CG B:ASN72 4.8 113.2 1.0 PA B:ATP402 4.8 103.9 1.0 CB B:LYS44 4.8 107.5 1.0 CG B:ASN68 4.8 128.0 1.0 C B:LYS44 4.9 107.5 1.0 O1A B:ATP402 5.0 103.9 1.0

S.Shao, A.F.A.Keszei, M.C.J.Yip, T.C.Chien. Structural Insights Into Metazoan Pre-Targeting Get Complexes Nat.Struct.Mol.Biol. 2021.
ISSN: ESSN 1545-9985
DOI: 10.1038/S41594-021-00690-7