Magnesium in PDB 7s65: Compressed Conformation of Nighttime State Kaic

All present enzymatic activity of Compressed Conformation of Nighttime State Kaic:
2.7.11.1;

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Magnesium atom in the Compressed Conformation of Nighttime State Kaic (pdb code 7s65). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the Compressed Conformation of Nighttime State Kaic, PDB code: 7s65:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 12 in the Compressed Conformation of Nighttime State Kaic


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Compressed Conformation of Nighttime State Kaic within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:28.3 occ:1.00 O1A A:ADP602 2.2 29.1 1.0 O1B A:ADP602 2.2 29.1 1.0 OG1 A:THR295 2.3 27.4 1.0 O3A A:ADP602 2.8 29.1 1.0 PA A:ADP602 2.8 29.1 1.0 O5' A:ADP602 2.9 29.1 1.0 PB A:ADP602 3.1 29.1 1.0 CB A:THR295 3.5 27.4 1.0 O2B A:ADP602 3.8 29.1 1.0 C5' A:ADP602 4.1 29.1 1.0 OE2 A:GLU319 4.1 29.5 1.0 O2A A:ADP602 4.3 29.1 1.0 O3B A:ADP602 4.3 29.1 1.0 CG2 A:THR295 4.4 27.4 1.0 N A:THR295 4.5 27.4 1.0 CA A:THR295 4.6 27.4 1.0 OE1 A:GLU318 4.7 27.7 1.0 O A:ASP378 4.7 25.5 1.0 CD A:GLU319 4.9 29.5 1.0 CG A:GLU319 4.9 29.5 1.0

Magnesium binding site 2 out of 12 in the Compressed Conformation of Nighttime State Kaic


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Compressed Conformation of Nighttime State Kaic within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg604 b:20.0 occ:1.00 O1G A:ATP603 1.4 20.0 1.0 OG1 A:THR53 1.8 17.0 1.0 O1B A:ATP603 2.3 20.0 1.0 O3B A:ATP603 2.4 20.0 1.0 PG A:ATP603 2.4 20.0 1.0 PB A:ATP603 2.9 20.0 1.0 CB A:THR53 3.0 17.0 1.0 O3G A:ATP603 3.5 20.0 1.0 O2G A:ATP603 3.5 20.0 1.0 NH1 B:ARG226 3.7 19.3 1.0 N A:THR53 3.7 17.0 1.0 OD2 A:ASP145 3.7 23.3 1.0 O3A A:ATP603 3.8 20.0 1.0 OE2 A:GLU78 3.8 24.8 1.0 CA A:THR53 3.8 17.0 1.0 CG2 A:THR53 4.1 17.0 1.0 O2A A:ATP603 4.1 20.0 1.0 O2B A:ATP603 4.2 20.0 1.0 OD1 A:ASP145 4.3 23.3 1.0 CG A:ASP145 4.4 23.3 1.0 PA A:ATP603 4.5 20.0 1.0 CB A:LYS52 4.7 16.1 1.0 C A:LYS52 4.8 16.1 1.0 CE A:LYS52 4.8 16.1 1.0 CZ B:ARG226 4.9 19.3 1.0 NZ A:LYS52 5.0 16.1 1.0 O1A A:ATP603 5.0 20.0 1.0

Magnesium binding site 3 out of 12 in the Compressed Conformation of Nighttime State Kaic


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Compressed Conformation of Nighttime State Kaic within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:28.7 occ:1.00 OE1 B:GLU318 2.1 23.1 1.0 O3G B:ATP602 2.2 24.7 1.0 O3B B:ATP602 2.2 24.7 1.0 OG1 B:THR295 2.3 25.2 1.0 OE2 B:GLU318 2.6 23.1 1.0 PG B:ATP602 2.7 24.7 1.0 CD B:GLU318 2.7 23.1 1.0 O1G B:ATP602 3.2 24.7 1.0 PB B:ATP602 3.6 24.7 1.0 CB B:THR295 3.7 25.2 1.0 O3A B:ATP602 3.8 24.7 1.0 O2G B:ATP602 4.0 24.7 1.0 OE2 B:GLU319 4.0 23.1 1.0 CG B:GLU318 4.1 23.1 1.0 O1B B:ATP602 4.2 24.7 1.0 N B:THR295 4.2 25.2 1.0 CA B:THR295 4.4 25.2 1.0 NH2 C:ARG459 4.5 22.0 1.0 O B:ASP378 4.5 23.9 1.0 CB B:GLU318 4.7 23.1 1.0 CG2 B:THR295 4.7 25.2 1.0 O2B B:ATP602 4.7 24.7 1.0 CE B:LYS294 4.8 24.7 1.0 CB B:LYS294 4.8 24.7 1.0 NZ B:LYS294 5.0 24.7 1.0

Magnesium binding site 4 out of 12 in the Compressed Conformation of Nighttime State Kaic


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Compressed Conformation of Nighttime State Kaic within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg604 b:14.3 occ:1.00 O2B B:ATP603 2.2 17.2 1.0 OG1 B:THR53 2.3 18.2 1.0 O1G B:ATP603 2.7 17.2 1.0 PB B:ATP603 3.0 17.2 1.0 O1B B:ATP603 3.2 17.2 1.0 CB B:THR53 3.7 18.2 1.0 PG B:ATP603 3.7 17.2 1.0 OD2 B:ASP145 3.7 24.4 1.0 O3B B:ATP603 3.8 17.2 1.0 OD1 B:ASP145 4.0 24.4 1.0 OE1 B:GLU77 4.1 30.0 1.0 O2G B:ATP603 4.1 17.2 1.0 NH2 C:ARG226 4.3 18.4 1.0 CG B:ASP145 4.3 24.4 1.0 N B:THR53 4.4 18.2 1.0 O3A B:ATP603 4.5 17.2 1.0 CA B:THR53 4.5 18.2 1.0 CG2 B:THR53 4.6 18.2 1.0 OE1 B:GLU78 4.7 26.6 1.0 O2A B:ATP603 4.7 17.2 1.0 OE2 B:GLU78 4.7 26.6 1.0 NE C:ARG226 4.8 18.4 1.0 CD B:GLU77 4.8 30.0 1.0 CZ C:ARG226 4.8 18.4 1.0

Magnesium binding site 5 out of 12 in the Compressed Conformation of Nighttime State Kaic


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Compressed Conformation of Nighttime State Kaic within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:26.6 occ:1.00 CG2 C:THR295 2.2 22.6 1.0 O3G C:ATP602 2.2 24.6 1.0 O2B C:ATP602 2.2 24.6 1.0 O1G C:ATP602 3.0 24.6 1.0 PG C:ATP602 3.0 24.6 1.0 O1A C:ATP602 3.4 24.6 1.0 OE1 C:GLU318 3.4 22.0 1.0 PB C:ATP602 3.5 24.6 1.0 CB C:THR295 3.5 22.6 1.0 OE2 C:GLU319 3.7 22.3 1.0 O3B C:ATP602 3.7 24.6 1.0 OG1 C:THR295 3.8 22.6 1.0 NH2 D:ARG459 4.0 22.6 1.0 O3A C:ATP602 4.1 24.6 1.0 PA C:ATP602 4.2 24.6 1.0 OD2 C:ASP378 4.3 20.4 1.0 CD C:GLU318 4.4 22.0 1.0 O2G C:ATP602 4.4 24.6 1.0 N C:THR295 4.5 22.6 1.0 CA C:THR295 4.5 22.6 1.0 OE2 C:GLU318 4.6 22.0 1.0 CD C:GLU319 4.7 22.3 1.0 O2A C:ATP602 4.7 24.6 1.0 O1B C:ATP602 4.8 24.6 1.0 CZ D:ARG459 4.8 22.6 1.0 OD1 C:ASP378 4.8 20.4 1.0 NE D:ARG459 5.0 22.6 1.0 CG C:ASP378 5.0 20.4 1.0

Magnesium binding site 6 out of 12 in the Compressed Conformation of Nighttime State Kaic


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Compressed Conformation of Nighttime State Kaic within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg604 b:21.4 occ:1.00 OG1 C:THR53 2.0 19.1 1.0 O2B C:ATP603 2.2 17.3 1.0 O3G C:ATP603 2.2 17.3 1.0 O3B C:ATP603 2.9 17.3 1.0 PG C:ATP603 3.1 17.3 1.0 PB C:ATP603 3.1 17.3 1.0 CB C:THR53 3.2 19.1 1.0 O2G C:ATP603 3.7 17.3 1.0 O3A C:ATP603 4.0 17.3 1.0 OE2 C:GLU77 4.1 29.9 1.0 CG2 C:THR53 4.1 19.1 1.0 N C:THR53 4.2 19.1 1.0 CA C:THR53 4.2 19.1 1.0 NH2 D:ARG226 4.4 18.0 1.0 O1B C:ATP603 4.4 17.3 1.0 O1G C:ATP603 4.4 17.3 1.0 OE2 C:GLU78 4.6 26.5 1.0 O1A C:ATP603 4.7 17.3 1.0 NE D:ARG226 4.8 18.0 1.0 NZ C:LYS52 4.8 17.2 1.0 PA C:ATP603 4.8 17.3 1.0 CZ D:ARG226 5.0 18.0 1.0

Magnesium binding site 7 out of 12 in the Compressed Conformation of Nighttime State Kaic


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Compressed Conformation of Nighttime State Kaic within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg601 b:28.3 occ:1.00 O1A D:ADP602 2.2 29.1 1.0 O1B D:ADP602 2.2 29.1 1.0 OG1 D:THR295 2.3 27.4 1.0 O3A D:ADP602 2.8 29.1 1.0 PA D:ADP602 2.8 29.1 1.0 O5' D:ADP602 2.9 29.1 1.0 PB D:ADP602 3.1 29.1 1.0 CB D:THR295 3.5 27.4 1.0 O2B D:ADP602 3.8 29.1 1.0 C5' D:ADP602 4.1 29.1 1.0 OE2 D:GLU319 4.1 29.5 1.0 O2A D:ADP602 4.3 29.1 1.0 O3B D:ADP602 4.3 29.1 1.0 CG2 D:THR295 4.4 27.4 1.0 N D:THR295 4.5 27.4 1.0 CA D:THR295 4.6 27.4 1.0 OE1 D:GLU318 4.7 27.7 1.0 O D:ASP378 4.7 25.5 1.0 CD D:GLU319 4.9 29.5 1.0 CG D:GLU319 4.9 29.5 1.0

Magnesium binding site 8 out of 12 in the Compressed Conformation of Nighttime State Kaic


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Compressed Conformation of Nighttime State Kaic within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg604 b:14.5 occ:1.00 O1G D:ATP603 1.4 15.7 1.0 OG1 D:THR53 1.8 17.0 1.0 O1B D:ATP603 2.3 15.7 1.0 O3B D:ATP603 2.4 15.7 1.0 PG D:ATP603 2.4 15.7 1.0 PB D:ATP603 2.9 15.7 1.0 CB D:THR53 3.0 17.0 1.0 O3G D:ATP603 3.5 15.7 1.0 O2G D:ATP603 3.5 15.7 1.0 N D:THR53 3.7 17.0 1.0 OD2 D:ASP145 3.7 23.3 1.0 O3A D:ATP603 3.8 15.7 1.0 NH1 E:ARG226 3.8 20.2 1.0 OE2 D:GLU78 3.8 24.8 1.0 CA D:THR53 3.8 17.0 1.0 CG2 D:THR53 4.1 17.0 1.0 O2A D:ATP603 4.1 15.7 1.0 O2B D:ATP603 4.2 15.7 1.0 OD1 D:ASP145 4.3 23.3 1.0 CG D:ASP145 4.4 23.3 1.0 PA D:ATP603 4.5 15.7 1.0 CB D:LYS52 4.7 16.1 1.0 C D:LYS52 4.8 16.1 1.0 CE D:LYS52 4.8 16.1 1.0 NZ D:LYS52 5.0 16.1 1.0 O1A D:ATP603 5.0 15.7 1.0

Magnesium binding site 9 out of 12 in the Compressed Conformation of Nighttime State Kaic


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Compressed Conformation of Nighttime State Kaic within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg601 b:26.7 occ:1.00 OE1 E:GLU318 2.1 23.4 1.0 O3G E:ATP602 2.2 26.0 1.0 O3B E:ATP602 2.2 26.0 1.0 OG1 E:THR295 2.3 26.6 1.0 OE2 E:GLU318 2.6 23.4 1.0 PG E:ATP602 2.7 26.0 1.0 CD E:GLU318 2.7 23.4 1.0 O1G E:ATP602 3.2 26.0 1.0 PB E:ATP602 3.6 26.0 1.0 CB E:THR295 3.7 26.6 1.0 O3A E:ATP602 3.8 26.0 1.0 O2G E:ATP602 4.0 26.0 1.0 OE2 E:GLU319 4.0 23.8 1.0 CG E:GLU318 4.1 23.4 1.0 O1B E:ATP602 4.2 26.0 1.0 N E:THR295 4.2 26.6 1.0 CA E:THR295 4.4 26.6 1.0 NH2 F:ARG459 4.5 22.3 1.0 O E:ASP378 4.5 24.7 1.0 CB E:GLU318 4.7 23.4 1.0 CG2 E:THR295 4.7 26.6 1.0 O2B E:ATP602 4.7 26.0 1.0 CE E:LYS294 4.8 26.3 1.0 CB E:LYS294 4.8 26.3 1.0 NZ E:LYS294 5.0 26.3 1.0

Magnesium binding site 10 out of 12 in the Compressed Conformation of Nighttime State Kaic


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Compressed Conformation of Nighttime State Kaic within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg604 b:17.4 occ:1.00 O2B E:ATP603 2.2 17.9 1.0 OG1 E:THR53 2.3 19.0 1.0 O1G E:ATP603 2.7 17.9 1.0 PB E:ATP603 3.0 17.9 1.0 O1B E:ATP603 3.2 17.9 1.0 CB E:THR53 3.7 19.0 1.0 PG E:ATP603 3.7 17.9 1.0 OD2 E:ASP145 3.7 25.5 1.0 O3B E:ATP603 3.8 17.9 1.0 OD1 E:ASP145 4.0 25.5 1.0 OE1 E:GLU77 4.1 30.3 1.0 O2G E:ATP603 4.1 17.9 1.0 NH2 F:ARG226 4.3 18.9 1.0 CG E:ASP145 4.3 25.5 1.0 N E:THR53 4.4 19.0 1.0 O3A E:ATP603 4.5 17.9 1.0 CA E:THR53 4.5 19.0 1.0 CG2 E:THR53 4.6 19.0 1.0 OE1 E:GLU78 4.7 27.1 1.0 O2A E:ATP603 4.7 17.9 1.0 OE2 E:GLU78 4.7 27.1 1.0 NE F:ARG226 4.7 18.9 1.0 CD E:GLU77 4.8 30.3 1.0 CZ F:ARG226 4.8 18.9 1.0

J.A.Swan, C.R.Sandate, A.G.Chavan, A.M.Freeberg, D.Etwaru, J.G.Palacios, S.S.Golden, A.Liwang, G.C.Lander, C.L.Partch. Hidden Conformations Differentiate Day and Night in A Circadian Pacemaker To Be Published.