Magnesium in PDB 7syc: Crystal Structure of Nucleoside Triphosphate Pyrophosphohydrolase From Klebsiella Pneumoniae Subsp. Pneumoniae

Enzymatic activity of Crystal Structure of Nucleoside Triphosphate Pyrophosphohydrolase From Klebsiella Pneumoniae Subsp. Pneumoniae

All present enzymatic activity of Crystal Structure of Nucleoside Triphosphate Pyrophosphohydrolase From Klebsiella Pneumoniae Subsp. Pneumoniae:
3.6.1.55;

Protein crystallography data

The structure of Crystal Structure of Nucleoside Triphosphate Pyrophosphohydrolase From Klebsiella Pneumoniae Subsp. Pneumoniae, PDB code: 7syc was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	44.19 / 2.00
*Space group*	P 6₁ 2 2
*Cell size a, b, c (Å), α, β, γ (°)*	67.14, 67.14, 136, 90, 90, 120
*R / R_free (%)*	19.8 / 24.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Nucleoside Triphosphate Pyrophosphohydrolase From Klebsiella Pneumoniae Subsp. Pneumoniae (pdb code 7syc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Nucleoside Triphosphate Pyrophosphohydrolase From Klebsiella Pneumoniae Subsp. Pneumoniae, PDB code: 7syc:

Magnesium binding site 1 out of 1 in 7syc

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Magnesium Binding Sites List in 7syc

Magnesium binding site 1 out of 1 in the Crystal Structure of Nucleoside Triphosphate Pyrophosphohydrolase From Klebsiella Pneumoniae Subsp. Pneumoniae

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Nucleoside Triphosphate Pyrophosphohydrolase From Klebsiella Pneumoniae Subsp. Pneumoniae within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg201 b:55.0 occ:1.00	O	A:HOH309	1.9	48.8	1.0
	O	A:HOH357	2.1	49.5	1.0
	OE1	A:GLU53	2.1	41.4	1.0
	O	A:HOH323	2.2	51.3	1.0
	OE2	A:GLU57	2.3	52.3	1.0
	O	A:HOH362	2.4	54.7	1.0
	CD	A:GLU53	3.1	44.1	1.0
	CD	A:GLU57	3.4	52.3	1.0
	OE2	A:GLU53	3.4	48.8	1.0
	O	A:HOH366	3.7	48.5	1.0
	O	A:GLY37	3.8	51.4	1.0
	CG	A:GLU57	3.8	52.3	1.0
	OE2	A:GLU98	4.2	72.7	1.0
	OE1	A:GLU56	4.4	58.0	1.0
	CG	A:GLU53	4.5	40.1	1.0
	OE1	A:GLU57	4.5	51.6	1.0
	CA	A:GLY38	4.5	39.5	1.0
	C	A:GLY37	4.6	43.7	1.0
	OE1	A:GLU98	4.8	70.9	1.0
	CB	A:GLU53	4.8	35.3	1.0
	O	A:HOH315	4.9	58.0	1.0
	N	A:GLY38	4.9	38.5	1.0
	CD	A:GLU98	4.9	70.5	1.0
	O	A:HOH318	5.0	56.5	1.0

Reference:

N.D.Debouver, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Putative Cystathionine Gamma-Synthase From Burkholderia Pseudomallei in Complex with Plp To Be Published.

Page generated: Thu Oct 3 08:57:40 2024

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