Magnesium in PDB 7syv: Structure of the Wt Ires EIF5B-Containing Pre-48S Initiation Complex, Open Conformation. Structure 14(Wt)

The structure of Structure of the Wt Ires EIF5B-Containing Pre-48S Initiation Complex, Open Conformation. Structure 14(Wt) also contains other interesting chemical elements:

Zinc	(Zn)	2 atoms
Sodium	(Na)	1 atom

The binding sites of Magnesium atom in the Structure of the Wt Ires EIF5B-Containing Pre-48S Initiation Complex, Open Conformation. Structure 14(Wt) (pdb code 7syv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the Wt Ires EIF5B-Containing Pre-48S Initiation Complex, Open Conformation. Structure 14(Wt), PDB code: 7syv:

Magnesium binding site 1 out of 1 in the Structure of the Wt Ires EIF5B-Containing Pre-48S Initiation Complex, Open Conformation. Structure 14(Wt)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Wt Ires EIF5B-Containing Pre-48S Initiation Complex, Open Conformation. Structure 14(Wt) within 5.0Å range: probe atom residue distance (Å) B Occ x:Mg1302 b:18.1 occ:1.00 O1G x:GTP1301 2.0 15.2 1.0 O2B x:GTP1301 2.1 13.0 1.0 PB x:GTP1301 3.2 16.5 1.0 PG x:GTP1301 3.2 17.7 1.0 CG2 x:THR643 3.2 498.2 1.0 O3B x:GTP1301 3.3 18.4 1.0 OG1 x:THR643 3.4 498.2 1.0 CG2 x:THR663 3.4 447.9 1.0 CB x:THR643 3.9 498.2 1.0 OG1 x:THR663 3.9 447.9 1.0 O3G x:GTP1301 4.0 16.0 1.0 N x:THR643 4.1 498.2 1.0 O2A x:GTP1301 4.1 18.2 1.0 O1B x:GTP1301 4.2 16.3 1.0 O3A x:GTP1301 4.3 17.6 1.0 CB x:THR663 4.3 447.9 1.0 CE x:LYS642 4.3 497.5 1.0 O2G x:GTP1301 4.3 20.2 1.0 NA x:NA1303 4.4 21.8 1.0 PA x:GTP1301 4.5 15.5 1.0 NZ x:LYS642 4.6 497.5 1.0 O1A x:GTP1301 4.6 17.6 1.0 CB x:LYS642 4.6 497.5 1.0 OD1 x:ASP700 4.6 465.8 1.0 CA x:THR643 4.6 498.2 1.0

Z.P.Brown, I.S.Abaeva, S.De, C.U.T.Hellen, T.V.Pestova, J.Frank. Molecular Architecture of 40S Translation Initiation Complexes on the Hepatitis C Virus Ires. Embo J. V. 41 10581 2022.
ISSN: ESSN 1460-2075
PubMed: 35822879
DOI: 10.15252/EMBJ.2022110581