Magnesium in PDB 7szj: Cryo-Em Structure of Rifamycin Bound to E. Coli Rnap and RRNBP1 Promoter Complex

Enzymatic activity of Cryo-Em Structure of Rifamycin Bound to E. Coli Rnap and RRNBP1 Promoter Complex

All present enzymatic activity of Cryo-Em Structure of Rifamycin Bound to E. Coli Rnap and RRNBP1 Promoter Complex:
2.7.7.6;

Other elements in 7szj:

The structure of Cryo-Em Structure of Rifamycin Bound to E. Coli Rnap and RRNBP1 Promoter Complex also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Rifamycin Bound to E. Coli Rnap and RRNBP1 Promoter Complex (pdb code 7szj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Rifamycin Bound to E. Coli Rnap and RRNBP1 Promoter Complex, PDB code: 7szj:

Magnesium binding site 1 out of 1 in 7szj

Go back to Magnesium Binding Sites List in 7szj
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Rifamycin Bound to E. Coli Rnap and RRNBP1 Promoter Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Rifamycin Bound to E. Coli Rnap and RRNBP1 Promoter Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg2001

b:15.2
occ:1.00
OD1 D:ASP460 2.2 15.2 1.0
OD1 D:ASP462 2.2 11.4 1.0
OD1 D:ASP464 2.2 16.1 1.0
CG D:ASP460 2.8 15.2 1.0
OD2 D:ASP460 2.9 15.2 1.0
CG D:ASP464 3.2 16.1 1.0
CG D:ASP462 3.2 11.4 1.0
OD2 D:ASP464 3.4 16.1 1.0
OD2 D:ASP462 3.6 11.4 1.0
O D:ASP460 4.0 15.2 1.0
CB D:ASP460 4.3 15.2 1.0
CB D:ASP464 4.5 16.1 1.0
C D:ASP462 4.6 11.4 1.0
O D:ASP462 4.6 11.4 1.0
C D:ASP460 4.6 15.2 1.0
CB D:ASP462 4.6 11.4 1.0
N D:ASP462 4.6 11.4 1.0
N D:ASP464 4.6 16.1 1.0
CA D:ASP462 4.8 11.4 1.0
CA D:ASP460 4.8 15.2 1.0
N D:ASP460 4.8 15.2 1.0
CA D:ASP464 4.9 16.1 1.0
N D:GLY463 4.9 15.2 1.0

Reference:

W.Rajeswaran, S.R.Ashkar, P.H.Lee, L.Yeomans, Y.Shin, S.G.Franzblau, K.S.Murakami, H.D.Showalter, G.A.Garcia. Optimization of Benzoxazinorifamycins to Improve Mycobacterium Tuberculosis Rna Polymerase Inhibition and Treatment of Tuberculosis. Acs Infect Dis. V. 8 1422 2022.
ISSN: ESSN 2373-8227
PubMed: 35772744
DOI: 10.1021/ACSINFECDIS.1C00636
Page generated: Thu Apr 6 22:23:08 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy