Magnesium in PDB 7t0v: Cryoem Structure of the Crosslinked RIX7 Aaa-Atpase

The binding sites of Magnesium atom in the Cryoem Structure of the Crosslinked RIX7 Aaa-Atpase (pdb code 7t0v). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 9 binding sites of Magnesium where determined in the Cryoem Structure of the Crosslinked RIX7 Aaa-Atpase, PDB code: 7t0v:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Magnesium binding site 1 out of 9 in the Cryoem Structure of the Crosslinked RIX7 Aaa-Atpase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of the Crosslinked RIX7 Aaa-Atpase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg903 b:44.9 occ:1.00 O2G A:ATP901 2.0 54.9 1.0 O1A A:ATP901 2.0 54.9 1.0 O1B A:ATP901 2.1 54.9 1.0 OG1 A:THR549 2.1 53.2 1.0 PA A:ATP901 2.9 54.9 1.0 CB A:THR549 2.9 53.2 1.0 PB A:ATP901 3.1 54.9 1.0 O3A A:ATP901 3.2 54.9 1.0 PG A:ATP901 3.3 54.9 1.0 O2A A:ATP901 3.3 54.9 1.0 O3B A:ATP901 3.5 54.9 1.0 N A:THR549 3.6 53.2 1.0 CA A:THR549 3.9 53.2 1.0 CG2 A:THR549 4.0 53.2 1.0 O1G A:ATP901 4.1 54.9 1.0 NH2 B:ARG659 4.2 51.1 1.0 O3G A:ATP901 4.3 54.9 1.0 O5' A:ATP901 4.4 54.9 1.0 O2B A:ATP901 4.4 54.9 1.0 NH2 B:ARG656 4.5 53.5 1.0 O B:ASP630 4.5 52.5 1.0 OD1 A:ASP601 4.5 63.6 1.0 NE2 A:GLN602 4.5 67.2 1.0 OD2 A:ASP601 4.6 63.6 1.0 C A:LYS548 4.8 51.9 1.0 CB A:LYS548 4.9 51.9 1.0 C A:THR549 5.0 53.2 1.0

Magnesium binding site 2 out of 9 in the Cryoem Structure of the Crosslinked RIX7 Aaa-Atpase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryoem Structure of the Crosslinked RIX7 Aaa-Atpase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg904 b:74.8 occ:1.00 O1B A:ATP902 1.9 80.4 1.0 O2G A:ATP902 1.9 80.4 1.0 O1A A:ATP902 2.1 80.4 1.0 PG A:ATP902 2.4 80.4 1.0 O3G A:ATP902 2.4 80.4 1.0 PB A:ATP902 2.5 80.4 1.0 O3B A:ATP902 2.7 80.4 1.0 OG1 A:THR250 2.7 80.8 1.0 PA A:ATP902 2.8 80.4 1.0 O3A A:ATP902 2.8 80.4 1.0 O2A A:ATP902 3.4 80.4 1.0 CB A:THR250 3.5 80.8 1.0 NH2 B:ARG362 3.5 66.3 1.0 N A:THR250 3.8 80.8 1.0 O1G A:ATP902 3.9 80.4 1.0 O2B A:ATP902 4.0 80.4 1.0 O5' A:ATP902 4.2 80.4 1.0 CA A:THR250 4.3 80.8 1.0 NH2 B:ARG361 4.7 63.5 1.0 N A:LYS249 4.7 77.5 1.0 CG2 A:THR250 4.8 80.8 1.0 CB A:LYS249 4.8 77.5 1.0 CZ B:ARG362 4.8 66.3 1.0 C A:LYS249 4.9 77.5 1.0 OD2 B:ASP331 5.0 82.1 1.0

Magnesium binding site 3 out of 9 in the Cryoem Structure of the Crosslinked RIX7 Aaa-Atpase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryoem Structure of the Crosslinked RIX7 Aaa-Atpase within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg903 b:57.8 occ:1.00 O1B B:ATP901 1.9 80.1 1.0 O2G B:ATP901 1.9 80.1 1.0 O1G B:ATP901 2.3 80.1 1.0 PG B:ATP901 2.3 80.1 1.0 PB B:ATP901 2.6 80.1 1.0 O1A B:ATP901 2.6 80.1 1.0 O3B B:ATP901 2.6 80.1 1.0 O3A B:ATP901 2.9 80.1 1.0 OG1 B:THR549 3.0 46.6 1.0 PA B:ATP901 3.2 80.1 1.0 NH2 C:ARG659 3.6 44.2 1.0 O3G B:ATP901 3.8 80.1 1.0 O2A B:ATP901 3.9 80.1 1.0 CB B:THR549 3.9 46.6 1.0 O2B B:ATP901 4.0 80.1 1.0 NH2 C:ARG656 4.1 47.7 1.0 N B:THR549 4.3 46.6 1.0 NE2 B:GLN602 4.5 46.3 1.0 O C:ASP630 4.6 52.3 1.0 O5' B:ATP901 4.7 80.1 1.0 CZ C:ARG659 4.7 44.2 1.0 CA B:THR549 4.8 46.6 1.0 NH1 C:ARG659 4.9 44.2 1.0 OD1 B:ASP601 4.9 48.1 1.0 CZ C:ARG656 4.9 47.7 1.0 NE C:ARG656 4.9 47.7 1.0

Magnesium binding site 4 out of 9 in the Cryoem Structure of the Crosslinked RIX7 Aaa-Atpase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryoem Structure of the Crosslinked RIX7 Aaa-Atpase within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg904 b:48.1 occ:1.00 O1B B:ATP902 1.9 51.0 1.0 O2G B:ATP902 1.9 51.0 1.0 O1A B:ATP902 2.0 51.0 1.0 OG1 B:THR250 2.5 45.1 1.0 PA B:ATP902 2.8 51.0 1.0 PB B:ATP902 2.8 51.0 1.0 O3A B:ATP902 3.0 51.0 1.0 PG B:ATP902 3.0 51.0 1.0 CB B:THR250 3.1 45.1 1.0 O3B B:ATP902 3.2 51.0 1.0 O2A B:ATP902 3.2 51.0 1.0 O3G B:ATP902 3.6 51.0 1.0 N B:THR250 3.9 45.1 1.0 CA B:THR250 4.1 45.1 1.0 O2B B:ATP902 4.2 51.0 1.0 CG2 B:THR250 4.3 45.1 1.0 OD2 C:ASP331 4.3 62.3 1.0 O5' B:ATP902 4.3 51.0 1.0 O1G B:ATP902 4.3 51.0 1.0 NH1 C:ARG362 4.6 44.9 1.0 NH2 C:ARG361 4.7 46.0 1.0

Magnesium binding site 5 out of 9 in the Cryoem Structure of the Crosslinked RIX7 Aaa-Atpase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryoem Structure of the Crosslinked RIX7 Aaa-Atpase within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg903 b:39.2 occ:1.00 O1B C:ATP901 1.9 53.2 1.0 O2G C:ATP901 2.0 53.2 1.0 O1A C:ATP901 2.0 53.2 1.0 O3A C:ATP901 2.1 53.2 1.0 PB C:ATP901 2.3 53.2 1.0 PA C:ATP901 2.4 53.2 1.0 O3B C:ATP901 2.7 53.2 1.0 PG C:ATP901 2.8 53.2 1.0 O2A C:ATP901 3.1 53.2 1.0 OG1 C:THR549 3.2 37.1 1.0 O3G C:ATP901 3.7 53.2 1.0 CB C:THR549 3.7 37.1 1.0 O2B C:ATP901 3.7 53.2 1.0 O5' C:ATP901 3.8 53.2 1.0 NH2 D:ARG656 3.9 41.3 1.0 O1G C:ATP901 4.0 53.2 1.0 N C:THR549 4.1 37.1 1.0 NH2 D:ARG659 4.1 40.2 1.0 CA C:THR549 4.5 37.1 1.0 C5' C:ATP901 4.6 53.2 1.0 O D:ASP630 4.6 47.5 1.0 CZ D:ARG656 4.6 41.3 1.0 NE D:ARG656 4.8 41.3 1.0 N C:GLY545 4.8 51.0 1.0 CG2 C:THR549 4.9 37.1 1.0 N C:LYS548 4.9 34.0 1.0

Magnesium binding site 6 out of 9 in the Cryoem Structure of the Crosslinked RIX7 Aaa-Atpase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryoem Structure of the Crosslinked RIX7 Aaa-Atpase within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg904 b:54.9 occ:1.00 O2G C:ATP902 1.9 52.7 1.0 O1B C:ATP902 2.0 52.7 1.0 O1A C:ATP902 2.1 52.7 1.0 O3A C:ATP902 2.1 52.7 1.0 PB C:ATP902 2.3 52.7 1.0 PA C:ATP902 2.3 52.7 1.0 O3B C:ATP902 2.7 52.7 1.0 PG C:ATP902 2.7 52.7 1.0 NH2 D:ARG362 2.9 46.6 1.0 OG1 C:THR250 2.9 42.6 1.0 O2A C:ATP902 3.1 52.7 1.0 O3G C:ATP902 3.3 52.7 1.0 CB C:THR250 3.4 42.6 1.0 O2B C:ATP902 3.7 52.7 1.0 O5' C:ATP902 3.8 52.7 1.0 N C:THR250 3.9 42.6 1.0 OD2 D:ASP331 4.0 69.2 1.0 CZ D:ARG362 4.0 46.6 1.0 O1G C:ATP902 4.1 52.7 1.0 NH2 D:ARG361 4.2 46.5 1.0 CA C:THR250 4.3 42.6 1.0 NH1 D:ARG362 4.4 46.6 1.0 CG2 C:THR250 4.6 42.6 1.0 C5' C:ATP902 4.8 52.7 1.0 N C:LYS249 5.0 43.0 1.0

Magnesium binding site 7 out of 9 in the Cryoem Structure of the Crosslinked RIX7 Aaa-Atpase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryoem Structure of the Crosslinked RIX7 Aaa-Atpase within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg903 b:44.6 occ:1.00 O1B D:ATP901 1.9 49.4 1.0 O2G D:ATP901 1.9 49.4 1.0 OG1 D:THR549 2.2 40.7 1.0 O1A D:ATP901 2.3 49.4 1.0 PB D:ATP901 3.0 49.4 1.0 PG D:ATP901 3.0 49.4 1.0 CB D:THR549 3.0 40.7 1.0 PA D:ATP901 3.2 49.4 1.0 O3B D:ATP901 3.2 49.4 1.0 O3A D:ATP901 3.4 49.4 1.0 NH2 E:ARG659 3.5 71.7 1.0 O1G D:ATP901 3.6 49.4 1.0 N D:THR549 3.7 40.7 1.0 O2A D:ATP901 3.7 49.4 1.0 CA D:THR549 4.0 40.7 1.0 OD2 E:ASP630 4.2 69.2 1.0 CG2 D:THR549 4.2 40.7 1.0 O3G D:ATP901 4.3 49.4 1.0 O2B D:ATP901 4.3 49.4 1.0 OD1 D:ASP601 4.6 52.3 1.0 O5' D:ATP901 4.6 49.4 1.0 NE2 D:GLN602 4.6 48.2 1.0 CZ E:ARG659 4.7 71.7 1.0 C D:LYS548 4.9 46.8 1.0 NH2 E:ARG656 4.9 65.4 1.0 CG E:ASP630 4.9 69.2 1.0 OD2 D:ASP601 5.0 52.3 1.0 CB D:LYS548 5.0 46.8 1.0

Magnesium binding site 8 out of 9 in the Cryoem Structure of the Crosslinked RIX7 Aaa-Atpase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cryoem Structure of the Crosslinked RIX7 Aaa-Atpase within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg904 b:62.9 occ:1.00 O1B D:ATP902 1.9 63.3 1.0 O2G D:ATP902 2.0 63.3 1.0 O3A D:ATP902 2.1 63.3 1.0 O1A D:ATP902 2.2 63.3 1.0 PB D:ATP902 2.2 63.3 1.0 PA D:ATP902 2.5 63.3 1.0 O3B D:ATP902 2.6 63.3 1.0 PG D:ATP902 2.7 63.3 1.0 OG1 D:THR250 2.9 54.3 1.0 NH2 E:ARG362 2.9 71.3 1.0 O3G D:ATP902 3.2 63.3 1.0 O2A D:ATP902 3.2 63.3 1.0 CB D:THR250 3.4 54.3 1.0 OD2 E:ASP331 3.7 87.4 1.0 O2B D:ATP902 3.7 63.3 1.0 O5' D:ATP902 4.0 63.3 1.0 N D:THR250 4.1 54.3 1.0 O1G D:ATP902 4.1 63.3 1.0 CZ E:ARG362 4.1 71.3 1.0 NH2 E:ARG361 4.3 74.9 1.0 CA D:THR250 4.3 54.3 1.0 NH1 E:ARG362 4.5 71.3 1.0 CG2 D:THR250 4.5 54.3 1.0 CG E:ASP331 4.7 87.4 1.0 C5' D:ATP902 4.9 63.3 1.0 OD1 E:ASP331 4.9 87.4 1.0

Magnesium binding site 9 out of 9 in the Cryoem Structure of the Crosslinked RIX7 Aaa-Atpase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cryoem Structure of the Crosslinked RIX7 Aaa-Atpase within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg903 b:107.2 occ:1.00 O1B E:ATP902 2.0 105.8 1.0 O2G E:ATP902 2.0 105.8 1.0 O1A E:ATP902 2.0 105.8 1.0 OG1 E:THR250 2.2 89.7 1.0 PA E:ATP902 2.7 105.8 1.0 CB E:THR250 2.8 89.7 1.0 PB E:ATP902 2.8 105.8 1.0 O3A E:ATP902 2.9 105.8 1.0 PG E:ATP902 3.0 105.8 1.0 O2A E:ATP902 3.1 105.8 1.0 O3B E:ATP902 3.2 105.8 1.0 O3G E:ATP902 3.3 105.8 1.0 N E:THR250 3.5 89.7 1.0 CA E:THR250 3.7 89.7 1.0 CG2 E:THR250 4.0 89.7 1.0 O2B E:ATP902 4.2 105.8 1.0 O5' E:ATP902 4.2 105.8 1.0 O1G E:ATP902 4.4 105.8 1.0 C E:LYS249 4.6 89.3 1.0 N E:LYS249 4.7 89.3 1.0 C E:THR250 4.8 89.7 1.0 N E:THR251 4.9 92.5 1.0 CB E:LYS249 4.9 89.3 1.0

S.Kocaman, R.E.Stanley, Y.H.Lo, J.Krahn, V.P.Dandey, M.Sobhany, M.Petrovich, J.G.Williams, L.J.Deterding, M.J.Borgnia. Cryoem Structure of Crosslinked RIX7 Aaa-Atpase To Be Published.