Magnesium in PDB 7t1j: Crystal Structure of Rubisco From Rhodospirillaceae Bacterium BRH_C57
Enzymatic activity of Crystal Structure of Rubisco From Rhodospirillaceae Bacterium BRH_C57
All present enzymatic activity of Crystal Structure of Rubisco From Rhodospirillaceae Bacterium BRH_C57:
4.1.1.39;
Protein crystallography data
The structure of Crystal Structure of Rubisco From Rhodospirillaceae Bacterium BRH_C57, PDB code: 7t1j
was solved by
J.H.Pereira,
A.K.Liu,
P.M.Shih,
P.D.Adams,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
29.52 /
1.96
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
74.807,
104.978,
369.611,
90,
93.04,
90
|
|
R / Rfree (%)
|
19.6 /
23.5
|
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Magnesium atom in the Crystal Structure of Rubisco From Rhodospirillaceae Bacterium BRH_C57
(pdb code 7t1j). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the
Crystal Structure of Rubisco From Rhodospirillaceae Bacterium BRH_C57, PDB code: 7t1j:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 12 in 7t1j
Go back to
Magnesium Binding Sites List in 7t1j
Magnesium binding site 1 out
of 12 in the Crystal Structure of Rubisco From Rhodospirillaceae Bacterium BRH_C57
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of Rubisco From Rhodospirillaceae Bacterium BRH_C57 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg502
b:23.0
occ:1.00
|
HO3
|
A:CAP501
|
1.6
|
25.6
|
1.0
|
|
O6
|
A:CAP501
|
2.0
|
21.9
|
1.0
|
|
OD1
|
A:ASP193
|
2.0
|
22.5
|
1.0
|
|
OE1
|
A:GLU194
|
2.1
|
24.0
|
1.0
|
|
OQ1
|
A:KCX191
|
2.1
|
22.4
|
1.0
|
|
O3
|
A:CAP501
|
2.2
|
21.3
|
1.0
|
|
O2
|
A:CAP501
|
2.3
|
22.7
|
1.0
|
|
HO2
|
A:CAP501
|
2.6
|
27.3
|
1.0
|
|
C
|
A:CAP501
|
2.7
|
25.6
|
1.0
|
|
C2
|
A:CAP501
|
2.7
|
21.7
|
1.0
|
|
C3
|
A:CAP501
|
3.0
|
22.1
|
1.0
|
|
H
|
A:GLU194
|
3.0
|
22.0
|
1.0
|
|
HD21
|
B:ASN111
|
3.0
|
27.8
|
1.0
|
|
HZ3
|
A:LYS168
|
3.1
|
31.1
|
1.0
|
|
CD
|
A:GLU194
|
3.2
|
20.9
|
1.0
|
|
CX
|
A:KCX191
|
3.2
|
19.1
|
1.0
|
|
HZ1
|
A:LYS168
|
3.2
|
31.1
|
1.0
|
|
CG
|
A:ASP193
|
3.2
|
22.4
|
1.0
|
|
HE2
|
A:HIS287
|
3.2
|
25.6
|
1.0
|
|
HZ2
|
A:LYS168
|
3.3
|
31.1
|
1.0
|
|
HZ3
|
A:LYS166
|
3.3
|
27.1
|
1.0
|
|
HG21
|
A:ILE164
|
3.4
|
28.1
|
1.0
|
|
NZ
|
A:LYS168
|
3.4
|
25.9
|
1.0
|
|
HZ1
|
A:LYS166
|
3.5
|
27.1
|
1.0
|
|
HD22
|
B:ASN111
|
3.5
|
27.8
|
1.0
|
|
OQ2
|
A:KCX191
|
3.5
|
21.6
|
1.0
|
|
H3
|
A:CAP501
|
3.5
|
26.5
|
1.0
|
|
HA
|
A:ASP193
|
3.6
|
26.8
|
1.0
|
|
ND2
|
B:ASN111
|
3.6
|
23.1
|
1.0
|
|
OE2
|
A:GLU194
|
3.6
|
24.4
|
1.0
|
|
OD2
|
A:ASP193
|
3.8
|
21.4
|
1.0
|
|
NZ
|
A:LYS166
|
3.8
|
22.5
|
1.0
|
|
HB3
|
A:GLU194
|
3.9
|
22.7
|
1.0
|
|
O7
|
A:CAP501
|
3.9
|
21.1
|
1.0
|
|
N
|
A:GLU194
|
3.9
|
18.3
|
1.0
|
|
NE2
|
A:HIS287
|
4.0
|
21.2
|
1.0
|
|
C1
|
A:CAP501
|
4.2
|
24.4
|
1.0
|
|
HZ2
|
A:LYS166
|
4.2
|
27.1
|
1.0
|
|
C4
|
A:CAP501
|
4.2
|
24.8
|
1.0
|
|
H4
|
A:CAP501
|
4.3
|
29.8
|
1.0
|
|
CA
|
A:ASP193
|
4.3
|
22.3
|
1.0
|
|
HG12
|
A:ILE164
|
4.3
|
29.1
|
1.0
|
|
CB
|
A:ASP193
|
4.3
|
19.0
|
1.0
|
|
CG2
|
A:ILE164
|
4.4
|
23.4
|
1.0
|
|
CG
|
A:GLU194
|
4.4
|
22.6
|
1.0
|
|
H51
|
A:CAP501
|
4.4
|
26.6
|
1.0
|
|
NZ
|
A:KCX191
|
4.5
|
20.7
|
1.0
|
|
CB
|
A:GLU194
|
4.5
|
18.9
|
1.0
|
|
HD3
|
A:PRO195
|
4.5
|
27.9
|
1.0
|
|
O
|
A:HOH700
|
4.6
|
26.5
|
1.0
|
|
HE1
|
A:HIS287
|
4.6
|
25.7
|
1.0
|
|
C
|
A:ASP193
|
4.6
|
20.3
|
1.0
|
|
HZ
|
A:KCX191
|
4.6
|
24.9
|
1.0
|
|
H11
|
A:CAP501
|
4.6
|
29.3
|
1.0
|
|
O1
|
A:CAP501
|
4.6
|
24.3
|
1.0
|
|
O
|
B:HOH801
|
4.7
|
24.1
|
1.0
|
|
CE1
|
A:HIS287
|
4.7
|
21.4
|
1.0
|
|
HG23
|
A:ILE164
|
4.7
|
28.1
|
1.0
|
|
H12
|
A:CAP501
|
4.7
|
29.3
|
1.0
|
|
HG22
|
A:ILE164
|
4.8
|
28.1
|
1.0
|
|
C5
|
A:CAP501
|
4.8
|
22.1
|
1.0
|
|
HD13
|
A:ILE164
|
4.8
|
24.9
|
1.0
|
|
HG3
|
A:LYS168
|
4.8
|
30.4
|
1.0
|
|
CA
|
A:GLU194
|
4.8
|
18.7
|
1.0
|
|
CG
|
B:ASN111
|
4.8
|
22.8
|
1.0
|
|
HB3
|
A:ASP193
|
4.8
|
22.9
|
1.0
|
|
CE
|
A:LYS168
|
4.9
|
27.2
|
1.0
|
|
CD2
|
A:HIS287
|
4.9
|
18.0
|
1.0
|
|
HE2
|
A:LYS166
|
4.9
|
29.1
|
1.0
|
|
HG3
|
A:GLU194
|
4.9
|
27.2
|
1.0
|
|
HG2
|
A:GLU194
|
5.0
|
27.2
|
1.0
|
|
H52
|
A:CAP501
|
5.0
|
26.6
|
1.0
|
|
HB2
|
A:ASP193
|
5.0
|
22.9
|
1.0
|
|
Magnesium binding site 2 out
of 12 in 7t1j
Go back to
Magnesium Binding Sites List in 7t1j
Magnesium binding site 2 out
of 12 in the Crystal Structure of Rubisco From Rhodospirillaceae Bacterium BRH_C57
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of Rubisco From Rhodospirillaceae Bacterium BRH_C57 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg502
b:20.8
occ:1.00
|
HO3
|
B:CAP501
|
1.6
|
31.1
|
1.0
|
|
OD1
|
B:ASP193
|
2.0
|
23.0
|
1.0
|
|
O6
|
B:CAP501
|
2.0
|
17.9
|
1.0
|
|
OE1
|
B:GLU194
|
2.0
|
22.3
|
1.0
|
|
OQ1
|
B:KCX191
|
2.1
|
20.6
|
1.0
|
|
O3
|
B:CAP501
|
2.3
|
25.9
|
1.0
|
|
O2
|
B:CAP501
|
2.4
|
21.1
|
1.0
|
|
HO2
|
B:CAP501
|
2.4
|
25.4
|
1.0
|
|
C
|
B:CAP501
|
2.7
|
23.8
|
1.0
|
|
C2
|
B:CAP501
|
2.8
|
20.0
|
1.0
|
|
H
|
B:GLU194
|
3.0
|
23.8
|
1.0
|
|
CX
|
B:KCX191
|
3.0
|
22.0
|
1.0
|
|
HD21
|
A:ASN111
|
3.0
|
26.2
|
1.0
|
|
C3
|
B:CAP501
|
3.1
|
19.6
|
1.0
|
|
CD
|
B:GLU194
|
3.1
|
23.0
|
1.0
|
|
HE2
|
B:HIS287
|
3.2
|
26.5
|
1.0
|
|
CG
|
B:ASP193
|
3.2
|
22.8
|
1.0
|
|
OQ2
|
B:KCX191
|
3.3
|
21.1
|
1.0
|
|
HG21
|
B:ILE164
|
3.3
|
25.6
|
1.0
|
|
HZ3
|
B:LYS168
|
3.3
|
32.9
|
1.0
|
|
HZ1
|
B:LYS166
|
3.4
|
25.4
|
1.0
|
|
HA
|
B:ASP193
|
3.5
|
24.3
|
1.0
|
|
HZ1
|
B:LYS168
|
3.5
|
32.9
|
1.0
|
|
HZ2
|
B:LYS168
|
3.6
|
32.9
|
1.0
|
|
HZ2
|
B:LYS166
|
3.6
|
25.4
|
1.0
|
|
OE2
|
B:GLU194
|
3.6
|
20.1
|
1.0
|
|
H3
|
B:CAP501
|
3.6
|
23.5
|
1.0
|
|
HD22
|
A:ASN111
|
3.6
|
26.2
|
1.0
|
|
ND2
|
A:ASN111
|
3.6
|
21.8
|
1.0
|
|
NZ
|
B:LYS168
|
3.7
|
27.4
|
1.0
|
|
N
|
B:GLU194
|
3.8
|
19.8
|
1.0
|
|
HB3
|
B:GLU194
|
3.8
|
24.9
|
1.0
|
|
OD2
|
B:ASP193
|
3.8
|
21.3
|
1.0
|
|
NZ
|
B:LYS166
|
3.9
|
21.1
|
1.0
|
|
NE2
|
B:HIS287
|
3.9
|
22.0
|
1.0
|
|
O7
|
B:CAP501
|
3.9
|
17.8
|
1.0
|
|
HZ3
|
B:LYS166
|
4.2
|
25.4
|
1.0
|
|
CA
|
B:ASP193
|
4.2
|
20.2
|
1.0
|
|
HG12
|
B:ILE164
|
4.2
|
24.3
|
1.0
|
|
C4
|
B:CAP501
|
4.2
|
23.6
|
1.0
|
|
H4
|
B:CAP501
|
4.3
|
28.4
|
1.0
|
|
CG2
|
B:ILE164
|
4.3
|
21.3
|
1.0
|
|
C1
|
B:CAP501
|
4.3
|
20.2
|
1.0
|
|
CB
|
B:ASP193
|
4.3
|
20.1
|
1.0
|
|
CG
|
B:GLU194
|
4.3
|
21.9
|
1.0
|
|
NZ
|
B:KCX191
|
4.4
|
17.6
|
1.0
|
|
H51
|
B:CAP501
|
4.4
|
26.3
|
1.0
|
|
CB
|
B:GLU194
|
4.4
|
20.7
|
1.0
|
|
HD3
|
B:PRO195
|
4.5
|
25.2
|
1.0
|
|
HG23
|
B:ILE164
|
4.6
|
25.6
|
1.0
|
|
C
|
B:ASP193
|
4.6
|
21.9
|
1.0
|
|
HZ
|
B:KCX191
|
4.6
|
21.1
|
1.0
|
|
HE1
|
B:HIS287
|
4.6
|
28.1
|
1.0
|
|
CE1
|
B:HIS287
|
4.7
|
23.4
|
1.0
|
|
HD13
|
B:ILE164
|
4.7
|
27.8
|
1.0
|
|
O1
|
B:CAP501
|
4.7
|
22.1
|
1.0
|
|
HG22
|
B:ILE164
|
4.7
|
25.6
|
1.0
|
|
H11
|
B:CAP501
|
4.7
|
24.3
|
1.0
|
|
HB3
|
B:ASP193
|
4.8
|
24.1
|
1.0
|
|
CA
|
B:GLU194
|
4.8
|
22.1
|
1.0
|
|
H12
|
B:CAP501
|
4.8
|
24.3
|
1.0
|
|
C5
|
B:CAP501
|
4.8
|
21.9
|
1.0
|
|
O
|
A:HOH710
|
4.8
|
22.1
|
1.0
|
|
CD2
|
B:HIS287
|
4.8
|
20.2
|
1.0
|
|
CG
|
A:ASN111
|
4.9
|
20.8
|
1.0
|
|
HG3
|
B:GLU194
|
4.9
|
26.4
|
1.0
|
|
HG2
|
B:GLU194
|
4.9
|
26.4
|
1.0
|
|
HG3
|
B:LYS168
|
4.9
|
30.8
|
1.0
|
|
HD2
|
B:HIS287
|
4.9
|
24.3
|
1.0
|
|
HB2
|
B:ASP193
|
5.0
|
24.1
|
1.0
|
|
CG1
|
B:ILE164
|
5.0
|
20.2
|
1.0
|
|
H52
|
B:CAP501
|
5.0
|
26.3
|
1.0
|
|
Magnesium binding site 3 out
of 12 in 7t1j
Go back to
Magnesium Binding Sites List in 7t1j
Magnesium binding site 3 out
of 12 in the Crystal Structure of Rubisco From Rhodospirillaceae Bacterium BRH_C57
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of Rubisco From Rhodospirillaceae Bacterium BRH_C57 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg502
b:33.5
occ:1.00
|
HO3
|
C:CAP501
|
1.6
|
43.9
|
1.0
|
|
OD1
|
C:ASP193
|
2.0
|
29.0
|
1.0
|
|
OQ1
|
C:KCX191
|
2.0
|
30.4
|
1.0
|
|
OE1
|
C:GLU194
|
2.1
|
31.5
|
1.0
|
|
HO2
|
C:CAP501
|
2.1
|
43.1
|
1.0
|
|
O2
|
C:CAP501
|
2.2
|
35.9
|
1.0
|
|
O3
|
C:CAP501
|
2.3
|
36.5
|
1.0
|
|
O6
|
C:CAP501
|
2.4
|
34.9
|
1.0
|
|
C2
|
C:CAP501
|
2.8
|
35.3
|
1.0
|
|
C
|
C:CAP501
|
2.9
|
36.7
|
1.0
|
|
H
|
C:GLU194
|
3.0
|
29.1
|
1.0
|
|
C3
|
C:CAP501
|
3.0
|
37.0
|
1.0
|
|
CX
|
C:KCX191
|
3.0
|
34.9
|
1.0
|
|
HD21
|
D:ASN111
|
3.1
|
40.0
|
1.0
|
|
HE2
|
C:HIS287
|
3.1
|
31.4
|
1.0
|
|
CD
|
C:GLU194
|
3.1
|
26.2
|
1.0
|
|
HZ2
|
C:LYS168
|
3.2
|
46.0
|
1.0
|
|
CG
|
C:ASP193
|
3.2
|
34.0
|
1.0
|
|
OQ2
|
C:KCX191
|
3.4
|
32.1
|
1.0
|
|
HG21
|
C:ILE164
|
3.4
|
33.6
|
1.0
|
|
HA
|
C:ASP193
|
3.5
|
32.6
|
1.0
|
|
H3
|
C:CAP501
|
3.5
|
44.5
|
1.0
|
|
HZ1
|
C:LYS168
|
3.6
|
46.0
|
1.0
|
|
HD22
|
D:ASN111
|
3.6
|
40.0
|
1.0
|
|
HZ2
|
C:LYS166
|
3.6
|
44.8
|
1.0
|
|
HZ3
|
C:LYS168
|
3.6
|
46.0
|
1.0
|
|
OE2
|
C:GLU194
|
3.6
|
31.3
|
1.0
|
|
ND2
|
D:ASN111
|
3.6
|
33.3
|
1.0
|
|
NZ
|
C:LYS168
|
3.6
|
38.3
|
1.0
|
|
N
|
C:GLU194
|
3.8
|
24.2
|
1.0
|
|
HZ1
|
C:LYS166
|
3.8
|
44.8
|
1.0
|
|
HB3
|
C:GLU194
|
3.8
|
29.6
|
1.0
|
|
NE2
|
C:HIS287
|
3.9
|
26.1
|
1.0
|
|
OD2
|
C:ASP193
|
3.9
|
39.7
|
1.0
|
|
NZ
|
C:LYS166
|
4.1
|
37.3
|
1.0
|
|
O7
|
C:CAP501
|
4.2
|
36.9
|
1.0
|
|
CA
|
C:ASP193
|
4.2
|
27.1
|
1.0
|
|
HD13
|
C:ILE164
|
4.3
|
44.8
|
1.0
|
|
CB
|
C:ASP193
|
4.3
|
27.8
|
1.0
|
|
C1
|
C:CAP501
|
4.3
|
36.6
|
1.0
|
|
NZ
|
C:KCX191
|
4.3
|
28.9
|
1.0
|
|
CG2
|
C:ILE164
|
4.3
|
27.9
|
1.0
|
|
C4
|
C:CAP501
|
4.3
|
35.9
|
1.0
|
|
CG
|
C:GLU194
|
4.4
|
28.8
|
1.0
|
|
HG12
|
C:ILE164
|
4.4
|
43.3
|
1.0
|
|
H4
|
C:CAP501
|
4.4
|
43.1
|
1.0
|
|
CB
|
C:GLU194
|
4.5
|
24.8
|
1.0
|
|
HZ
|
C:KCX191
|
4.5
|
34.7
|
1.0
|
|
H51
|
C:CAP501
|
4.5
|
47.6
|
1.0
|
|
HD3
|
C:PRO195
|
4.5
|
31.4
|
1.0
|
|
HE1
|
C:HIS287
|
4.5
|
35.3
|
1.0
|
|
C
|
C:ASP193
|
4.5
|
25.6
|
1.0
|
|
HG23
|
C:ILE164
|
4.6
|
33.6
|
1.0
|
|
CE1
|
C:HIS287
|
4.6
|
29.4
|
1.0
|
|
HZ3
|
C:LYS166
|
4.6
|
44.8
|
1.0
|
|
H11
|
C:CAP501
|
4.7
|
44.0
|
1.0
|
|
HB3
|
C:ASP193
|
4.7
|
33.5
|
1.0
|
|
O1
|
C:CAP501
|
4.8
|
39.3
|
1.0
|
|
CA
|
C:GLU194
|
4.8
|
24.7
|
1.0
|
|
HG22
|
C:ILE164
|
4.8
|
33.6
|
1.0
|
|
CD2
|
C:HIS287
|
4.8
|
29.8
|
1.0
|
|
CG
|
D:ASN111
|
4.9
|
34.5
|
1.0
|
|
HG3
|
C:LYS168
|
4.9
|
47.1
|
1.0
|
|
C5
|
C:CAP501
|
4.9
|
39.6
|
1.0
|
|
H12
|
C:CAP501
|
4.9
|
44.0
|
1.0
|
|
HD2
|
C:HIS287
|
4.9
|
35.8
|
1.0
|
|
HG2
|
C:GLU194
|
4.9
|
34.6
|
1.0
|
|
HG3
|
C:GLU194
|
4.9
|
34.6
|
1.0
|
|
Magnesium binding site 4 out
of 12 in 7t1j
Go back to
Magnesium Binding Sites List in 7t1j
Magnesium binding site 4 out
of 12 in the Crystal Structure of Rubisco From Rhodospirillaceae Bacterium BRH_C57
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystal Structure of Rubisco From Rhodospirillaceae Bacterium BRH_C57 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg502
b:25.9
occ:1.00
|
OD1
|
D:ASP193
|
2.0
|
25.1
|
1.0
|
|
OQ2
|
D:KCX191
|
2.0
|
22.6
|
1.0
|
|
OE1
|
D:GLU194
|
2.1
|
25.2
|
1.0
|
|
O7
|
D:CAP501
|
2.7
|
29.7
|
1.0
|
|
O3
|
D:CAP501
|
2.7
|
30.8
|
1.0
|
|
HO2
|
D:CAP501
|
2.7
|
35.7
|
1.0
|
|
O2
|
D:CAP501
|
2.8
|
29.7
|
1.0
|
|
H
|
D:GLU194
|
3.0
|
25.4
|
1.0
|
|
HO3
|
D:CAP501
|
3.0
|
37.0
|
1.0
|
|
CX
|
D:KCX191
|
3.1
|
19.0
|
1.0
|
|
CG
|
D:ASP193
|
3.1
|
22.3
|
1.0
|
|
HE2
|
D:HIS287
|
3.2
|
22.9
|
1.0
|
|
HG21
|
D:ILE164
|
3.2
|
34.6
|
1.0
|
|
CD
|
D:GLU194
|
3.2
|
25.6
|
1.0
|
|
C
|
D:CAP501
|
3.2
|
29.5
|
1.0
|
|
HD21
|
C:ASN111
|
3.3
|
34.6
|
1.0
|
|
HZ1
|
D:LYS166
|
3.3
|
37.6
|
1.0
|
|
HZ3
|
D:LYS168
|
3.3
|
40.5
|
1.0
|
|
OQ1
|
D:KCX191
|
3.4
|
27.3
|
1.0
|
|
C2
|
D:CAP501
|
3.4
|
27.4
|
1.0
|
|
HA
|
D:ASP193
|
3.4
|
25.5
|
1.0
|
|
HZ2
|
D:LYS166
|
3.5
|
37.6
|
1.0
|
|
HZ1
|
D:LYS168
|
3.6
|
40.5
|
1.0
|
|
HZ2
|
D:LYS168
|
3.6
|
40.5
|
1.0
|
|
C3
|
D:CAP501
|
3.7
|
28.3
|
1.0
|
|
NZ
|
D:LYS168
|
3.7
|
33.7
|
1.0
|
|
OE2
|
D:GLU194
|
3.7
|
30.2
|
1.0
|
|
HD22
|
C:ASN111
|
3.7
|
34.6
|
1.0
|
|
OD2
|
D:ASP193
|
3.8
|
26.1
|
1.0
|
|
ND2
|
C:ASN111
|
3.8
|
28.8
|
1.0
|
|
N
|
D:GLU194
|
3.8
|
21.1
|
1.0
|
|
NZ
|
D:LYS166
|
3.8
|
31.3
|
1.0
|
|
HB3
|
D:GLU194
|
3.9
|
29.7
|
1.0
|
|
NE2
|
D:HIS287
|
3.9
|
19.1
|
1.0
|
|
HG12
|
D:ILE164
|
4.1
|
28.7
|
1.0
|
|
CA
|
D:ASP193
|
4.2
|
21.2
|
1.0
|
|
CG2
|
D:ILE164
|
4.2
|
28.8
|
1.0
|
|
HZ3
|
D:LYS166
|
4.2
|
37.6
|
1.0
|
|
CB
|
D:ASP193
|
4.2
|
27.5
|
1.0
|
|
O6
|
D:CAP501
|
4.3
|
34.1
|
1.0
|
|
NZ
|
D:KCX191
|
4.3
|
22.5
|
1.0
|
|
H3
|
D:CAP501
|
4.3
|
34.1
|
1.0
|
|
CG
|
D:GLU194
|
4.4
|
24.7
|
1.0
|
|
HG23
|
D:ILE164
|
4.5
|
34.6
|
1.0
|
|
CB
|
D:GLU194
|
4.5
|
24.7
|
1.0
|
|
HZ
|
D:KCX191
|
4.5
|
27.1
|
1.0
|
|
C
|
D:ASP193
|
4.5
|
21.6
|
1.0
|
|
HD3
|
D:PRO195
|
4.5
|
27.9
|
1.0
|
|
H51
|
D:CAP501
|
4.6
|
36.4
|
1.0
|
|
H4
|
D:CAP501
|
4.6
|
32.3
|
1.0
|
|
HG22
|
D:ILE164
|
4.6
|
34.6
|
1.0
|
|
HD13
|
D:ILE164
|
4.6
|
36.8
|
1.0
|
|
C4
|
D:CAP501
|
4.7
|
26.9
|
1.0
|
|
HE1
|
D:HIS287
|
4.7
|
30.1
|
1.0
|
|
CE1
|
D:HIS287
|
4.7
|
25.0
|
1.0
|
|
HB3
|
D:ASP193
|
4.8
|
33.0
|
1.0
|
|
C1
|
D:CAP501
|
4.8
|
31.1
|
1.0
|
|
CA
|
D:GLU194
|
4.8
|
22.2
|
1.0
|
|
CD2
|
D:HIS287
|
4.8
|
21.1
|
1.0
|
|
CG1
|
D:ILE164
|
4.9
|
23.9
|
1.0
|
|
HD2
|
D:HIS287
|
4.9
|
25.4
|
1.0
|
|
HB2
|
D:ASP193
|
4.9
|
33.0
|
1.0
|
|
HG3
|
D:LYS168
|
4.9
|
34.0
|
1.0
|
|
C5
|
D:CAP501
|
5.0
|
30.3
|
1.0
|
|
HE2
|
D:LYS166
|
5.0
|
32.6
|
1.0
|
|
O
|
C:HOH656
|
5.0
|
30.6
|
1.0
|
|
O
|
C:HOH661
|
5.0
|
33.0
|
1.0
|
|
Magnesium binding site 5 out
of 12 in 7t1j
Go back to
Magnesium Binding Sites List in 7t1j
Magnesium binding site 5 out
of 12 in the Crystal Structure of Rubisco From Rhodospirillaceae Bacterium BRH_C57
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Crystal Structure of Rubisco From Rhodospirillaceae Bacterium BRH_C57 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg502
b:26.5
occ:1.00
|
HO3
|
E:CAP501
|
1.7
|
37.6
|
1.0
|
|
OD1
|
E:ASP193
|
1.9
|
26.4
|
1.0
|
|
HO2
|
E:CAP501
|
1.9
|
31.4
|
1.0
|
|
OQ2
|
E:KCX191
|
2.0
|
25.4
|
1.0
|
|
OE1
|
E:GLU194
|
2.1
|
29.2
|
1.0
|
|
O3
|
E:CAP501
|
2.3
|
31.3
|
1.0
|
|
O7
|
E:CAP501
|
2.3
|
26.8
|
1.0
|
|
O2
|
E:CAP501
|
2.4
|
26.1
|
1.0
|
|
H
|
E:GLU194
|
2.8
|
28.5
|
1.0
|
|
C2
|
E:CAP501
|
2.9
|
27.5
|
1.0
|
|
C
|
E:CAP501
|
3.0
|
28.2
|
1.0
|
|
CX
|
E:KCX191
|
3.0
|
24.1
|
1.0
|
|
C3
|
E:CAP501
|
3.0
|
28.6
|
1.0
|
|
HG21
|
E:ILE164
|
3.1
|
31.9
|
1.0
|
|
CG
|
E:ASP193
|
3.1
|
28.7
|
1.0
|
|
CD
|
E:GLU194
|
3.2
|
24.4
|
1.0
|
|
HA
|
E:ASP193
|
3.2
|
34.2
|
1.0
|
|
HE2
|
E:HIS287
|
3.2
|
34.7
|
1.0
|
|
HD21
|
F:ASN111
|
3.3
|
37.7
|
1.0
|
|
OQ1
|
E:KCX191
|
3.3
|
29.8
|
1.0
|
|
HZ2
|
E:LYS168
|
3.4
|
36.8
|
1.0
|
|
H3
|
E:CAP501
|
3.4
|
34.4
|
1.0
|
|
HZ2
|
E:LYS166
|
3.5
|
38.4
|
1.0
|
|
N
|
E:GLU194
|
3.6
|
23.7
|
1.0
|
|
HZ3
|
E:LYS168
|
3.6
|
36.8
|
1.0
|
|
HZ1
|
E:LYS168
|
3.7
|
36.8
|
1.0
|
|
OE2
|
E:GLU194
|
3.8
|
30.8
|
1.0
|
|
NZ
|
E:LYS168
|
3.8
|
30.6
|
1.0
|
|
HB3
|
E:GLU194
|
3.8
|
28.3
|
1.0
|
|
HD22
|
F:ASN111
|
3.8
|
37.7
|
1.0
|
|
OD2
|
E:ASP193
|
3.8
|
29.7
|
1.0
|
|
HZ1
|
E:LYS166
|
3.9
|
38.4
|
1.0
|
|
ND2
|
F:ASN111
|
3.9
|
31.4
|
1.0
|
|
NE2
|
E:HIS287
|
3.9
|
28.9
|
1.0
|
|
CA
|
E:ASP193
|
4.0
|
28.4
|
1.0
|
|
HG12
|
E:ILE164
|
4.0
|
37.0
|
1.0
|
|
CG2
|
E:ILE164
|
4.0
|
26.5
|
1.0
|
|
NZ
|
E:LYS166
|
4.1
|
31.9
|
1.0
|
|
CB
|
E:ASP193
|
4.1
|
24.1
|
1.0
|
|
O6
|
E:CAP501
|
4.2
|
27.4
|
1.0
|
|
NZ
|
E:KCX191
|
4.3
|
28.1
|
1.0
|
|
C
|
E:ASP193
|
4.3
|
25.4
|
1.0
|
|
HG23
|
E:ILE164
|
4.4
|
31.9
|
1.0
|
|
C4
|
E:CAP501
|
4.4
|
29.7
|
1.0
|
|
CG
|
E:GLU194
|
4.4
|
26.2
|
1.0
|
|
CB
|
E:GLU194
|
4.4
|
23.5
|
1.0
|
|
C1
|
E:CAP501
|
4.4
|
25.6
|
1.0
|
|
HZ
|
E:KCX191
|
4.5
|
33.8
|
1.0
|
|
HG22
|
E:ILE164
|
4.5
|
31.9
|
1.0
|
|
HD3
|
E:PRO195
|
4.5
|
32.9
|
1.0
|
|
H51
|
E:CAP501
|
4.5
|
38.4
|
1.0
|
|
H4
|
E:CAP501
|
4.6
|
35.7
|
1.0
|
|
HD13
|
E:ILE164
|
4.6
|
40.1
|
1.0
|
|
HZ3
|
E:LYS166
|
4.6
|
38.4
|
1.0
|
|
HB3
|
E:ASP193
|
4.6
|
29.0
|
1.0
|
|
CA
|
E:GLU194
|
4.6
|
26.4
|
1.0
|
|
CD2
|
E:HIS287
|
4.7
|
23.7
|
1.0
|
|
CG1
|
E:ILE164
|
4.8
|
30.8
|
1.0
|
|
HD2
|
E:HIS287
|
4.8
|
28.5
|
1.0
|
|
H11
|
E:CAP501
|
4.8
|
30.7
|
1.0
|
|
CE1
|
E:HIS287
|
4.8
|
23.0
|
1.0
|
|
HB2
|
E:ASP193
|
4.8
|
29.0
|
1.0
|
|
HE1
|
E:HIS287
|
4.8
|
27.6
|
1.0
|
|
CB
|
E:ILE164
|
4.9
|
27.3
|
1.0
|
|
HE2
|
E:LYS166
|
4.9
|
40.1
|
1.0
|
|
O1
|
E:CAP501
|
4.9
|
32.0
|
1.0
|
|
C5
|
E:CAP501
|
4.9
|
32.0
|
1.0
|
|
HG3
|
E:LYS168
|
4.9
|
36.6
|
1.0
|
|
HB
|
E:ILE164
|
4.9
|
32.8
|
1.0
|
|
HG2
|
E:GLU194
|
4.9
|
31.5
|
1.0
|
|
H12
|
E:CAP501
|
5.0
|
30.7
|
1.0
|
|
HG3
|
E:GLU194
|
5.0
|
31.5
|
1.0
|
|
H52
|
E:CAP501
|
5.0
|
38.4
|
1.0
|
|
Magnesium binding site 6 out
of 12 in 7t1j
Go back to
Magnesium Binding Sites List in 7t1j
Magnesium binding site 6 out
of 12 in the Crystal Structure of Rubisco From Rhodospirillaceae Bacterium BRH_C57
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Crystal Structure of Rubisco From Rhodospirillaceae Bacterium BRH_C57 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg502
b:27.3
occ:1.00
|
HO3
|
F:CAP501
|
1.6
|
32.4
|
1.0
|
|
O7
|
F:CAP501
|
1.9
|
26.3
|
1.0
|
|
OD1
|
F:ASP193
|
2.0
|
27.8
|
1.0
|
|
OE1
|
F:GLU194
|
2.0
|
29.8
|
1.0
|
|
OQ2
|
F:KCX191
|
2.1
|
25.4
|
1.0
|
|
HO2
|
F:CAP501
|
2.1
|
32.3
|
1.0
|
|
O3
|
F:CAP501
|
2.2
|
26.9
|
1.0
|
|
O2
|
F:CAP501
|
2.2
|
26.8
|
1.0
|
|
C
|
F:CAP501
|
2.6
|
26.6
|
1.0
|
|
C2
|
F:CAP501
|
2.6
|
26.7
|
1.0
|
|
C3
|
F:CAP501
|
2.9
|
28.0
|
1.0
|
|
H
|
F:GLU194
|
3.1
|
30.9
|
1.0
|
|
HD21
|
E:ASN111
|
3.1
|
32.8
|
1.0
|
|
CX
|
F:KCX191
|
3.1
|
25.0
|
1.0
|
|
CD
|
F:GLU194
|
3.1
|
26.6
|
1.0
|
|
CG
|
F:ASP193
|
3.1
|
28.6
|
1.0
|
|
HE2
|
F:HIS287
|
3.2
|
34.5
|
1.0
|
|
HG21
|
F:ILE164
|
3.3
|
32.5
|
1.0
|
|
HZ1
|
F:LYS166
|
3.3
|
35.7
|
1.0
|
|
HZ2
|
F:LYS168
|
3.4
|
33.2
|
1.0
|
|
H3
|
F:CAP501
|
3.4
|
33.6
|
1.0
|
|
OQ1
|
F:KCX191
|
3.4
|
30.7
|
1.0
|
|
HZ3
|
F:LYS168
|
3.5
|
33.2
|
1.0
|
|
HZ2
|
F:LYS166
|
3.5
|
35.7
|
1.0
|
|
HA
|
F:ASP193
|
3.5
|
35.3
|
1.0
|
|
HD22
|
E:ASN111
|
3.5
|
32.8
|
1.0
|
|
OE2
|
F:GLU194
|
3.6
|
25.3
|
1.0
|
|
HZ1
|
F:LYS168
|
3.6
|
33.2
|
1.0
|
|
ND2
|
E:ASN111
|
3.7
|
27.3
|
1.0
|
|
NZ
|
F:LYS168
|
3.7
|
27.6
|
1.0
|
|
OD2
|
F:ASP193
|
3.8
|
30.9
|
1.0
|
|
O6
|
F:CAP501
|
3.8
|
32.3
|
1.0
|
|
NZ
|
F:LYS166
|
3.8
|
29.7
|
1.0
|
|
N
|
F:GLU194
|
3.9
|
25.7
|
1.0
|
|
HB3
|
F:GLU194
|
4.0
|
35.4
|
1.0
|
|
NE2
|
F:HIS287
|
4.0
|
28.7
|
1.0
|
|
C1
|
F:CAP501
|
4.1
|
31.2
|
1.0
|
|
HG12
|
F:ILE164
|
4.1
|
32.5
|
1.0
|
|
C4
|
F:CAP501
|
4.2
|
27.3
|
1.0
|
|
HZ3
|
F:LYS166
|
4.2
|
35.7
|
1.0
|
|
CG2
|
F:ILE164
|
4.2
|
27.0
|
1.0
|
|
H4
|
F:CAP501
|
4.2
|
32.8
|
1.0
|
|
CA
|
F:ASP193
|
4.3
|
29.4
|
1.0
|
|
CB
|
F:ASP193
|
4.3
|
30.1
|
1.0
|
|
CG
|
F:GLU194
|
4.4
|
25.4
|
1.0
|
|
NZ
|
F:KCX191
|
4.4
|
22.8
|
1.0
|
|
H51
|
F:CAP501
|
4.4
|
34.7
|
1.0
|
|
HG23
|
F:ILE164
|
4.5
|
32.5
|
1.0
|
|
CB
|
F:GLU194
|
4.5
|
29.5
|
1.0
|
|
H11
|
F:CAP501
|
4.6
|
37.5
|
1.0
|
|
O1
|
F:CAP501
|
4.6
|
29.1
|
1.0
|
|
HD3
|
F:PRO195
|
4.6
|
36.1
|
1.0
|
|
HZ
|
F:KCX191
|
4.6
|
27.4
|
1.0
|
|
HE1
|
F:HIS287
|
4.6
|
32.6
|
1.0
|
|
H12
|
F:CAP501
|
4.6
|
37.5
|
1.0
|
|
C
|
F:ASP193
|
4.6
|
25.8
|
1.0
|
|
CE1
|
F:HIS287
|
4.7
|
27.2
|
1.0
|
|
HG22
|
F:ILE164
|
4.7
|
32.5
|
1.0
|
|
C5
|
F:CAP501
|
4.7
|
28.9
|
1.0
|
|
HD13
|
F:ILE164
|
4.8
|
37.3
|
1.0
|
|
HB3
|
F:ASP193
|
4.8
|
36.1
|
1.0
|
|
H52
|
F:CAP501
|
4.8
|
34.7
|
1.0
|
|
CA
|
F:GLU194
|
4.9
|
25.0
|
1.0
|
|
CD2
|
F:HIS287
|
4.9
|
28.2
|
1.0
|
|
CG1
|
F:ILE164
|
4.9
|
27.0
|
1.0
|
|
O
|
E:HOH632
|
4.9
|
31.0
|
1.0
|
|
HG3
|
F:LYS168
|
4.9
|
31.7
|
1.0
|
|
HG3
|
F:GLU194
|
4.9
|
30.6
|
1.0
|
|
HB2
|
F:ASP193
|
4.9
|
36.1
|
1.0
|
|
CG
|
E:ASN111
|
5.0
|
28.3
|
1.0
|
|
HG2
|
F:GLU194
|
5.0
|
30.6
|
1.0
|
|
O
|
E:HOH644
|
5.0
|
27.3
|
1.0
|
|
Magnesium binding site 7 out
of 12 in 7t1j
Go back to
Magnesium Binding Sites List in 7t1j
Magnesium binding site 7 out
of 12 in the Crystal Structure of Rubisco From Rhodospirillaceae Bacterium BRH_C57
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Crystal Structure of Rubisco From Rhodospirillaceae Bacterium BRH_C57 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg502
b:46.6
occ:1.00
|
HO3
|
G:CAP501
|
1.8
|
54.0
|
1.0
|
|
OQ1
|
G:KCX191
|
1.8
|
44.7
|
1.0
|
|
O3
|
G:CAP501
|
1.9
|
45.0
|
1.0
|
|
OE1
|
G:GLU194
|
2.0
|
42.4
|
1.0
|
|
HE2
|
G:HIS287
|
2.2
|
44.3
|
1.0
|
|
OD1
|
G:ASP193
|
2.4
|
43.4
|
1.0
|
|
O7
|
G:CAP501
|
2.7
|
47.6
|
1.0
|
|
CX
|
G:KCX191
|
2.7
|
45.9
|
1.0
|
|
NE2
|
G:HIS287
|
3.0
|
36.9
|
1.0
|
|
H
|
G:GLU194
|
3.0
|
40.1
|
1.0
|
|
C3
|
G:CAP501
|
3.0
|
51.6
|
1.0
|
|
OQ2
|
G:KCX191
|
3.1
|
51.0
|
1.0
|
|
HD21
|
H:ASN111
|
3.1
|
47.6
|
1.0
|
|
O2
|
G:CAP501
|
3.1
|
59.7
|
1.0
|
|
CD
|
G:GLU194
|
3.2
|
38.8
|
1.0
|
|
C
|
G:CAP501
|
3.3
|
56.6
|
1.0
|
|
C2
|
G:CAP501
|
3.3
|
59.1
|
1.0
|
|
H3
|
G:CAP501
|
3.5
|
62.0
|
1.0
|
|
HA
|
G:ASP193
|
3.5
|
47.9
|
1.0
|
|
CG
|
G:ASP193
|
3.6
|
44.6
|
1.0
|
|
HB3
|
G:GLU194
|
3.6
|
38.4
|
1.0
|
|
HG12
|
G:ILE164
|
3.7
|
56.6
|
1.0
|
|
HO2
|
G:CAP501
|
3.8
|
71.7
|
1.0
|
|
ND2
|
H:ASN111
|
3.8
|
39.6
|
1.0
|
|
CD2
|
G:HIS287
|
3.8
|
34.6
|
1.0
|
|
N
|
G:GLU194
|
3.8
|
33.4
|
1.0
|
|
OE2
|
G:GLU194
|
3.9
|
41.8
|
1.0
|
|
CE1
|
G:HIS287
|
3.9
|
35.0
|
1.0
|
|
H51
|
G:CAP501
|
3.9
|
69.9
|
1.0
|
|
HD2
|
G:HIS287
|
3.9
|
41.6
|
1.0
|
|
HD22
|
H:ASN111
|
3.9
|
47.6
|
1.0
|
|
NZ
|
G:KCX191
|
4.0
|
41.9
|
1.0
|
|
HE1
|
G:HIS287
|
4.0
|
42.1
|
1.0
|
|
HZ
|
G:KCX191
|
4.2
|
50.3
|
1.0
|
|
C4
|
G:CAP501
|
4.2
|
57.5
|
1.0
|
|
HZ1
|
G:LYS168
|
4.2
|
64.8
|
1.0
|
|
H52
|
G:CAP501
|
4.3
|
69.9
|
1.0
|
|
CA
|
G:ASP193
|
4.3
|
39.8
|
1.0
|
|
C5
|
G:CAP501
|
4.3
|
58.2
|
1.0
|
|
CB
|
G:GLU194
|
4.3
|
31.9
|
1.0
|
|
OD2
|
G:ASP193
|
4.3
|
54.9
|
1.0
|
|
O6
|
G:CAP501
|
4.4
|
56.6
|
1.0
|
|
CG
|
G:GLU194
|
4.4
|
33.9
|
1.0
|
|
H4
|
G:CAP501
|
4.5
|
69.1
|
1.0
|
|
HE1
|
G:HIS321
|
4.5
|
58.3
|
1.0
|
|
HD13
|
G:ILE164
|
4.5
|
56.2
|
1.0
|
|
HG21
|
G:ILE164
|
4.6
|
63.7
|
1.0
|
|
CB
|
G:ASP193
|
4.6
|
39.0
|
1.0
|
|
C
|
G:ASP193
|
4.6
|
35.0
|
1.0
|
|
CG1
|
G:ILE164
|
4.7
|
47.1
|
1.0
|
|
CA
|
G:GLU194
|
4.7
|
35.8
|
1.0
|
|
HD3
|
G:PRO195
|
4.8
|
39.1
|
1.0
|
|
HZ2
|
G:LYS166
|
4.8
|
102.3
|
1.0
|
|
C1
|
G:CAP501
|
4.8
|
63.1
|
1.0
|
|
HG3
|
G:GLU194
|
4.9
|
40.8
|
1.0
|
|
CG
|
H:ASN111
|
4.9
|
38.3
|
1.0
|
|
ND1
|
G:HIS287
|
5.0
|
32.7
|
1.0
|
|
CG
|
G:HIS287
|
5.0
|
29.6
|
1.0
|
|
NZ
|
G:LYS168
|
5.0
|
54.0
|
1.0
|
|
HG2
|
G:GLU194
|
5.0
|
40.8
|
1.0
|
|
Magnesium binding site 8 out
of 12 in 7t1j
Go back to
Magnesium Binding Sites List in 7t1j
Magnesium binding site 8 out
of 12 in the Crystal Structure of Rubisco From Rhodospirillaceae Bacterium BRH_C57
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Crystal Structure of Rubisco From Rhodospirillaceae Bacterium BRH_C57 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mg502
b:29.1
occ:1.00
|
HO3
|
H:CAP501
|
1.5
|
30.9
|
1.0
|
|
O7
|
H:CAP501
|
2.0
|
26.6
|
1.0
|
|
OD1
|
H:ASP193
|
2.0
|
22.7
|
1.0
|
|
OQ2
|
H:KCX191
|
2.0
|
21.1
|
1.0
|
|
OE1
|
H:GLU194
|
2.1
|
27.2
|
1.0
|
|
O3
|
H:CAP501
|
2.2
|
25.7
|
1.0
|
|
O2
|
H:CAP501
|
2.4
|
27.9
|
1.0
|
|
HO2
|
H:CAP501
|
2.7
|
33.5
|
1.0
|
|
C
|
H:CAP501
|
2.7
|
23.4
|
1.0
|
|
C2
|
H:CAP501
|
2.8
|
24.9
|
1.0
|
|
C3
|
H:CAP501
|
3.0
|
28.9
|
1.0
|
|
H
|
H:GLU194
|
3.0
|
26.9
|
1.0
|
|
CX
|
H:KCX191
|
3.0
|
23.7
|
1.0
|
|
HD21
|
G:ASN111
|
3.1
|
28.7
|
1.0
|
|
CG
|
H:ASP193
|
3.2
|
26.4
|
1.0
|
|
CD
|
H:GLU194
|
3.2
|
23.0
|
1.0
|
|
HE2
|
H:HIS287
|
3.2
|
29.3
|
1.0
|
|
HG21
|
H:ILE164
|
3.3
|
30.1
|
1.0
|
|
HZ2
|
H:LYS168
|
3.3
|
32.8
|
1.0
|
|
OQ1
|
H:KCX191
|
3.4
|
26.7
|
1.0
|
|
HZ3
|
H:LYS168
|
3.4
|
32.8
|
1.0
|
|
HA
|
H:ASP193
|
3.5
|
26.7
|
1.0
|
|
H3
|
H:CAP501
|
3.5
|
34.7
|
1.0
|
|
HZ3
|
H:LYS166
|
3.5
|
31.3
|
1.0
|
|
HZ1
|
H:LYS168
|
3.6
|
32.8
|
1.0
|
|
HD22
|
G:ASN111
|
3.6
|
28.7
|
1.0
|
|
NZ
|
H:LYS168
|
3.6
|
27.3
|
1.0
|
|
HZ1
|
H:LYS166
|
3.6
|
31.3
|
1.0
|
|
ND2
|
G:ASN111
|
3.7
|
23.9
|
1.0
|
|
OE2
|
H:GLU194
|
3.7
|
25.7
|
1.0
|
|
OD2
|
H:ASP193
|
3.8
|
28.3
|
1.0
|
|
O6
|
H:CAP501
|
3.9
|
30.5
|
1.0
|
|
N
|
H:GLU194
|
3.9
|
22.4
|
1.0
|
|
NE2
|
H:HIS287
|
3.9
|
24.4
|
1.0
|
|
HB3
|
H:GLU194
|
3.9
|
29.0
|
1.0
|
|
NZ
|
H:LYS166
|
4.0
|
26.1
|
1.0
|
|
CA
|
H:ASP193
|
4.2
|
22.2
|
1.0
|
|
C4
|
H:CAP501
|
4.2
|
26.7
|
1.0
|
|
CG2
|
H:ILE164
|
4.3
|
25.0
|
1.0
|
|
C1
|
H:CAP501
|
4.3
|
27.1
|
1.0
|
|
HG12
|
H:ILE164
|
4.3
|
34.8
|
1.0
|
|
CB
|
H:ASP193
|
4.3
|
23.2
|
1.0
|
|
H4
|
H:CAP501
|
4.3
|
32.1
|
1.0
|
|
NZ
|
H:KCX191
|
4.3
|
22.9
|
1.0
|
|
H51
|
H:CAP501
|
4.4
|
37.2
|
1.0
|
|
CG
|
H:GLU194
|
4.4
|
26.2
|
1.0
|
|
HZ
|
H:KCX191
|
4.5
|
27.5
|
1.0
|
|
HZ2
|
H:LYS166
|
4.5
|
31.3
|
1.0
|
|
CB
|
H:GLU194
|
4.5
|
24.1
|
1.0
|
|
HD3
|
H:PRO195
|
4.6
|
32.4
|
1.0
|
|
C
|
H:ASP193
|
4.6
|
22.4
|
1.0
|
|
HG23
|
H:ILE164
|
4.6
|
30.1
|
1.0
|
|
HE1
|
H:HIS287
|
4.6
|
28.6
|
1.0
|
|
CE1
|
H:HIS287
|
4.7
|
23.8
|
1.0
|
|
HG22
|
H:ILE164
|
4.7
|
30.1
|
1.0
|
|
H11
|
H:CAP501
|
4.7
|
32.6
|
1.0
|
|
O1
|
H:CAP501
|
4.7
|
30.7
|
1.0
|
|
HB3
|
H:ASP193
|
4.8
|
27.9
|
1.0
|
|
H12
|
H:CAP501
|
4.8
|
32.6
|
1.0
|
|
C5
|
H:CAP501
|
4.8
|
30.9
|
1.0
|
|
HD13
|
H:ILE164
|
4.8
|
31.1
|
1.0
|
|
CD2
|
H:HIS287
|
4.8
|
24.8
|
1.0
|
|
HG3
|
H:LYS168
|
4.8
|
31.3
|
1.0
|
|
CA
|
H:GLU194
|
4.9
|
24.1
|
1.0
|
|
CG
|
G:ASN111
|
4.9
|
21.5
|
1.0
|
|
HE2
|
H:LYS166
|
4.9
|
35.6
|
1.0
|
|
HD2
|
H:HIS287
|
4.9
|
29.8
|
1.0
|
|
H52
|
H:CAP501
|
4.9
|
37.2
|
1.0
|
|
HB2
|
H:ASP193
|
5.0
|
27.9
|
1.0
|
|
HG3
|
H:GLU194
|
5.0
|
31.4
|
1.0
|
|
HG2
|
H:GLU194
|
5.0
|
31.4
|
1.0
|
|
Magnesium binding site 9 out
of 12 in 7t1j
Go back to
Magnesium Binding Sites List in 7t1j
Magnesium binding site 9 out
of 12 in the Crystal Structure of Rubisco From Rhodospirillaceae Bacterium BRH_C57
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Crystal Structure of Rubisco From Rhodospirillaceae Bacterium BRH_C57 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Mg502
b:40.0
occ:1.00
|
HO3
|
I:CAP501
|
1.6
|
44.9
|
1.0
|
|
OQ2
|
I:KCX191
|
2.0
|
38.9
|
1.0
|
|
O3
|
I:CAP501
|
2.1
|
37.4
|
1.0
|
|
OD1
|
I:ASP193
|
2.2
|
38.4
|
1.0
|
|
OE1
|
I:GLU194
|
2.2
|
35.4
|
1.0
|
|
O6
|
I:CAP501
|
2.3
|
41.2
|
1.0
|
|
O2
|
I:CAP501
|
2.3
|
41.0
|
1.0
|
|
HO2
|
I:CAP501
|
2.5
|
49.2
|
1.0
|
|
C2
|
I:CAP501
|
2.8
|
45.4
|
1.0
|
|
C
|
I:CAP501
|
2.9
|
41.6
|
1.0
|
|
C3
|
I:CAP501
|
2.9
|
42.0
|
1.0
|
|
HE2
|
I:HIS287
|
3.0
|
42.1
|
1.0
|
|
CX
|
I:KCX191
|
3.0
|
34.6
|
1.0
|
|
HG21
|
I:ILE164
|
3.1
|
46.2
|
1.0
|
|
H
|
I:GLU194
|
3.2
|
38.0
|
1.0
|
|
HD21
|
J:ASN111
|
3.2
|
48.3
|
1.0
|
|
CG
|
I:ASP193
|
3.2
|
41.4
|
1.0
|
|
H3
|
I:CAP501
|
3.3
|
50.5
|
1.0
|
|
HZ2
|
I:LYS168
|
3.4
|
55.3
|
1.0
|
|
CD
|
I:GLU194
|
3.4
|
34.2
|
1.0
|
|
OQ1
|
I:KCX191
|
3.4
|
40.4
|
1.0
|
|
HA
|
I:ASP193
|
3.4
|
39.0
|
1.0
|
|
HZ2
|
I:LYS166
|
3.5
|
50.8
|
1.0
|
|
HZ3
|
I:LYS168
|
3.6
|
55.3
|
1.0
|
|
HZ1
|
I:LYS166
|
3.7
|
50.8
|
1.0
|
|
NE2
|
I:HIS287
|
3.8
|
35.0
|
1.0
|
|
HD22
|
J:ASN111
|
3.8
|
48.3
|
1.0
|
|
ND2
|
J:ASN111
|
3.8
|
40.2
|
1.0
|
|
OE2
|
I:GLU194
|
3.8
|
36.5
|
1.0
|
|
NZ
|
I:LYS168
|
3.8
|
46.0
|
1.0
|
|
OD2
|
I:ASP193
|
3.8
|
40.8
|
1.0
|
|
HZ1
|
I:LYS168
|
3.9
|
55.3
|
1.0
|
|
N
|
I:GLU194
|
4.0
|
31.6
|
1.0
|
|
NZ
|
I:LYS166
|
4.0
|
42.3
|
1.0
|
|
HG12
|
I:ILE164
|
4.0
|
49.5
|
1.0
|
|
HB3
|
I:GLU194
|
4.1
|
40.2
|
1.0
|
|
O7
|
I:CAP501
|
4.1
|
43.1
|
1.0
|
|
CG2
|
I:ILE164
|
4.1
|
38.4
|
1.0
|
|
C4
|
I:CAP501
|
4.2
|
41.1
|
1.0
|
|
CA
|
I:ASP193
|
4.2
|
32.5
|
1.0
|
|
HZ3
|
I:LYS166
|
4.2
|
50.8
|
1.0
|
|
NZ
|
I:KCX191
|
4.3
|
33.0
|
1.0
|
|
C1
|
I:CAP501
|
4.3
|
46.5
|
1.0
|
|
HG23
|
I:ILE164
|
4.3
|
46.2
|
1.0
|
|
CB
|
I:ASP193
|
4.3
|
37.0
|
1.0
|
|
H51
|
I:CAP501
|
4.4
|
55.6
|
1.0
|
|
H4
|
I:CAP501
|
4.4
|
49.4
|
1.0
|
|
HZ
|
I:KCX191
|
4.4
|
39.6
|
1.0
|
|
HG22
|
I:ILE164
|
4.5
|
46.2
|
1.0
|
|
HE1
|
I:HIS287
|
4.6
|
42.5
|
1.0
|
|
CE1
|
I:HIS287
|
4.6
|
35.4
|
1.0
|
|
CG
|
I:GLU194
|
4.6
|
32.4
|
1.0
|
|
H11
|
I:CAP501
|
4.6
|
55.9
|
1.0
|
|
C
|
I:ASP193
|
4.7
|
30.8
|
1.0
|
|
CB
|
I:GLU194
|
4.7
|
33.4
|
1.0
|
|
CD2
|
I:HIS287
|
4.7
|
33.1
|
1.0
|
|
C5
|
I:CAP501
|
4.7
|
46.3
|
1.0
|
|
HD13
|
I:ILE164
|
4.7
|
48.6
|
1.0
|
|
HD3
|
I:PRO195
|
4.7
|
38.2
|
1.0
|
|
HD2
|
I:HIS287
|
4.7
|
39.8
|
1.0
|
|
H52
|
I:CAP501
|
4.8
|
55.6
|
1.0
|
|
O1
|
I:CAP501
|
4.8
|
50.3
|
1.0
|
|
CG1
|
I:ILE164
|
4.8
|
41.2
|
1.0
|
|
H12
|
I:CAP501
|
4.8
|
55.9
|
1.0
|
|
HB3
|
I:ASP193
|
4.9
|
44.4
|
1.0
|
|
CB
|
I:ILE164
|
4.9
|
37.9
|
1.0
|
|
HB2
|
I:ASP193
|
5.0
|
44.4
|
1.0
|
|
CA
|
I:GLU194
|
5.0
|
30.5
|
1.0
|
|
HG3
|
I:LYS168
|
5.0
|
48.2
|
1.0
|
|
Magnesium binding site 10 out
of 12 in 7t1j
Go back to
Magnesium Binding Sites List in 7t1j
Magnesium binding site 10 out
of 12 in the Crystal Structure of Rubisco From Rhodospirillaceae Bacterium BRH_C57
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Crystal Structure of Rubisco From Rhodospirillaceae Bacterium BRH_C57 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Mg502
b:32.7
occ:1.00
|
OE1
|
J:GLU194
|
2.0
|
33.0
|
1.0
|
|
OQ1
|
J:KCX191
|
2.0
|
29.6
|
1.0
|
|
OD1
|
J:ASP193
|
2.0
|
34.0
|
1.0
|
|
O3
|
J:CAP501
|
2.7
|
32.7
|
1.0
|
|
O6
|
J:CAP501
|
2.8
|
32.3
|
1.0
|
|
O2
|
J:CAP501
|
2.9
|
35.9
|
1.0
|
|
HO3
|
J:CAP501
|
3.0
|
39.3
|
1.0
|
|
H
|
J:GLU194
|
3.0
|
36.5
|
1.0
|
|
HD21
|
I:ASN111
|
3.0
|
34.6
|
1.0
|
|
CX
|
J:KCX191
|
3.0
|
31.2
|
1.0
|
|
CD
|
J:GLU194
|
3.1
|
31.1
|
1.0
|
|
HE2
|
J:HIS287
|
3.1
|
37.2
|
1.0
|
|
HO2
|
J:CAP501
|
3.2
|
43.1
|
1.0
|
|
CG
|
J:ASP193
|
3.2
|
32.1
|
1.0
|
|
HZ2
|
J:LYS168
|
3.3
|
46.9
|
1.0
|
|
C
|
J:CAP501
|
3.3
|
34.0
|
1.0
|
|
OQ2
|
J:KCX191
|
3.3
|
31.0
|
1.0
|
|
HG21
|
J:ILE164
|
3.4
|
40.4
|
1.0
|
|
HZ1
|
J:LYS168
|
3.4
|
46.9
|
1.0
|
|
C2
|
J:CAP501
|
3.5
|
30.9
|
1.0
|
|
HZ1
|
J:LYS166
|
3.5
|
43.3
|
1.0
|
|
HA
|
J:ASP193
|
3.5
|
38.5
|
1.0
|
|
HD22
|
I:ASN111
|
3.6
|
34.6
|
1.0
|
|
OE2
|
J:GLU194
|
3.6
|
32.4
|
1.0
|
|
ND2
|
I:ASN111
|
3.6
|
28.8
|
1.0
|
|
NZ
|
J:LYS168
|
3.7
|
39.0
|
1.0
|
|
HZ2
|
J:LYS166
|
3.7
|
43.3
|
1.0
|
|
C3
|
J:CAP501
|
3.7
|
32.1
|
1.0
|
|
NE2
|
J:HIS287
|
3.8
|
31.0
|
1.0
|
|
HZ3
|
J:LYS168
|
3.8
|
46.9
|
1.0
|
|
HB3
|
J:GLU194
|
3.8
|
38.2
|
1.0
|
|
N
|
J:GLU194
|
3.8
|
30.3
|
1.0
|
|
OD2
|
J:ASP193
|
3.9
|
30.5
|
1.0
|
|
NZ
|
J:LYS166
|
4.0
|
36.0
|
1.0
|
|
HG12
|
J:ILE164
|
4.1
|
39.3
|
1.0
|
|
CA
|
J:ASP193
|
4.2
|
32.1
|
1.0
|
|
CG
|
J:GLU194
|
4.3
|
32.8
|
1.0
|
|
NZ
|
J:KCX191
|
4.3
|
29.6
|
1.0
|
|
CB
|
J:ASP193
|
4.3
|
31.6
|
1.0
|
|
CG2
|
J:ILE164
|
4.3
|
33.7
|
1.0
|
|
O7
|
J:CAP501
|
4.3
|
29.5
|
1.0
|
|
HZ3
|
J:LYS166
|
4.4
|
43.3
|
1.0
|
|
CB
|
J:GLU194
|
4.4
|
31.8
|
1.0
|
|
H3
|
J:CAP501
|
4.4
|
38.6
|
1.0
|
|
HE1
|
J:HIS287
|
4.5
|
37.0
|
1.0
|
|
CE1
|
J:HIS287
|
4.5
|
30.8
|
1.0
|
|
HZ
|
J:KCX191
|
4.5
|
35.6
|
1.0
|
|
HD3
|
J:PRO195
|
4.5
|
35.5
|
1.0
|
|
H51
|
J:CAP501
|
4.6
|
42.0
|
1.0
|
|
C
|
J:ASP193
|
4.6
|
31.6
|
1.0
|
|
HG23
|
J:ILE164
|
4.6
|
40.4
|
1.0
|
|
H4
|
J:CAP501
|
4.6
|
40.8
|
1.0
|
|
C4
|
J:CAP501
|
4.7
|
34.0
|
1.0
|
|
CD2
|
J:HIS287
|
4.7
|
31.0
|
1.0
|
|
CA
|
J:GLU194
|
4.8
|
26.9
|
1.0
|
|
HG22
|
J:ILE164
|
4.8
|
40.4
|
1.0
|
|
HD2
|
J:HIS287
|
4.8
|
37.2
|
1.0
|
|
HB3
|
J:ASP193
|
4.8
|
37.9
|
1.0
|
|
HG2
|
J:GLU194
|
4.9
|
39.4
|
1.0
|
|
CG
|
I:ASN111
|
4.9
|
27.1
|
1.0
|
|
HG3
|
J:GLU194
|
4.9
|
39.4
|
1.0
|
|
C1
|
J:CAP501
|
4.9
|
32.4
|
1.0
|
|
C5
|
J:CAP501
|
4.9
|
34.9
|
1.0
|
|
CG1
|
J:ILE164
|
4.9
|
32.7
|
1.0
|
|
H52
|
J:CAP501
|
5.0
|
42.0
|
1.0
|
|
HG3
|
J:LYS168
|
5.0
|
36.4
|
1.0
|
|
HB2
|
J:ASP193
|
5.0
|
37.9
|
1.0
|
|
Reference:
A.K.Liu,
J.H.Pereira,
A.J.Kehl,
D.J.Rosenberg,
D.J.Orr,
S.K.S.Chu,
D.M.Banda,
M.Hammel,
P.D.Adams,
J.B.Siegel,
P.M.Shih.
Structural Plasticity Enables Evolution and Innovation of Rubisco Assemblies. Sci Adv V. 8 C9440 2022.
ISSN: ESSN 2375-2548
PubMed: 36026446
DOI: 10.1126/SCIADV.ADC9440
Page generated: Thu Oct 3 08:59:56 2024
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