Magnesium in PDB 7t23: E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4

Enzymatic activity of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4

All present enzymatic activity of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4:
2.7.7.101; 3.6.4.12;

Other elements in 7t23:

The structure of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 also contains other interesting chemical elements:

Aluminium (Al) 5 atoms
Fluorine (F) 20 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 (pdb code 7t23). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4, PDB code: 7t23:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 7t23

Go back to Magnesium Binding Sites List in 7t23
Magnesium binding site 1 out of 5 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1003

b:119.3
occ:1.00
 F4 B:ALF1002 2.0 119.3 1.0
F1 B:ALF1002 2.0 119.3 1.0
OG1 B:THR238 2.0 127.9 1.0
O3B B:ADP1001 2.1 128.6 1.0
AL B:ALF1002 2.8 119.3 1.0
CB B:THR238 2.9 127.9 1.0
O2A B:ADP1001 3.0 128.6 1.0
OE1 B:GLU262 3.0 130.9 1.0
PB B:ADP1001 3.1 128.6 1.0
OE2 B:GLU262 3.2 130.9 1.0
O2B B:ADP1001 3.4 128.6 1.0
CD B:GLU262 3.4 130.9 1.0
PA B:ADP1001 3.5 128.6 1.0
O1A B:ADP1001 3.6 128.6 1.0
O3A B:ADP1001 3.7 128.6 1.0
N B:THR238 3.7 127.9 1.0
CA B:THR238 3.9 127.9 1.0
CG2 B:THR238 4.0 127.9 1.0
F3 B:ALF1002 4.2 119.3 1.0
F2 B:ALF1002 4.2 119.3 1.0
NH1 B:ARG271 4.3 136.2 1.0
O1B B:ADP1001 4.5 128.6 1.0
CG B:GLU262 4.8 130.9 1.0
C B:LYS237 4.9 131.7 1.0
SD B:MET263 4.9 134.0 1.0
OD1 B:ASP343 5.0 133.9 1.0

Magnesium binding site 2 out of 5 in 7t23

Go back to Magnesium Binding Sites List in 7t23
Magnesium binding site 2 out of 5 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1003

b:107.6
occ:1.00
 F4 C:ALF1002 2.0 107.6 1.0
F1 C:ALF1002 2.0 107.6 1.0
OG1 C:THR238 2.0 120.6 1.0
O3B C:ADP1001 2.1 119.5 1.0
AL C:ALF1002 2.8 107.6 1.0
CB C:THR238 2.9 120.6 1.0
OE1 C:GLU262 2.9 110.4 1.0
PB C:ADP1001 3.0 119.5 1.0
O3A C:ADP1001 3.2 119.5 1.0
OE2 C:GLU262 3.3 110.4 1.0
O2B C:ADP1001 3.3 119.5 1.0
O2A C:ADP1001 3.4 119.5 1.0
CD C:GLU262 3.5 110.4 1.0
O1A C:ADP1001 3.5 119.5 1.0
PA C:ADP1001 3.5 119.5 1.0
N C:THR238 3.7 120.6 1.0
CA C:THR238 3.9 120.6 1.0
CG2 C:THR238 4.0 120.6 1.0
F2 C:ALF1002 4.2 107.6 1.0
F3 C:ALF1002 4.2 107.6 1.0
NH1 C:ARG271 4.3 126.8 1.0
O1B C:ADP1001 4.4 119.5 1.0
OD1 C:ASP343 4.6 118.7 1.0
C C:LYS237 4.9 121.2 1.0
CG C:GLU262 4.9 110.4 1.0
SD C:MET263 4.9 122.0 1.0
C C:THR238 5.0 120.6 1.0

Magnesium binding site 3 out of 5 in 7t23

Go back to Magnesium Binding Sites List in 7t23
Magnesium binding site 3 out of 5 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1003

b:114.2
occ:1.00
 F1 D:ALF1002 2.0 114.2 1.0
F4 D:ALF1002 2.0 114.2 1.0
OG1 D:THR238 2.0 117.7 1.0
O3B D:ADP1001 2.1 124.8 1.0
AL D:ALF1002 2.8 114.2 1.0
CB D:THR238 2.9 117.7 1.0
O1A D:ADP1001 3.0 124.8 1.0
OE1 D:GLU262 3.0 111.2 1.0
PB D:ADP1001 3.1 124.8 1.0
OE2 D:GLU262 3.3 111.2 1.0
O2B D:ADP1001 3.3 124.8 1.0
CD D:GLU262 3.4 111.2 1.0
O3A D:ADP1001 3.8 124.8 1.0
PA D:ADP1001 3.8 124.8 1.0
N D:THR238 3.9 117.7 1.0
CG2 D:THR238 3.9 117.7 1.0
CA D:THR238 4.0 117.7 1.0
F3 D:ALF1002 4.2 114.2 1.0
F2 D:ALF1002 4.2 114.2 1.0
NH1 D:ARG271 4.3 121.6 1.0
O2A D:ADP1001 4.4 124.8 1.0
O1B D:ADP1001 4.5 124.8 1.0
SD D:MET263 4.5 120.7 1.0
OD2 D:ASP343 4.6 114.8 1.0
CG D:GLU262 4.7 111.2 1.0
OD1 D:ASP343 4.8 114.8 1.0

Magnesium binding site 4 out of 5 in 7t23

Go back to Magnesium Binding Sites List in 7t23
Magnesium binding site 4 out of 5 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg1003

b:127.6
occ:1.00
 F1 E:ALF1002 2.0 127.6 1.0
F4 E:ALF1002 2.0 127.6 1.0
OG1 E:THR238 2.0 119.0 1.0
O1B E:ADP1001 2.1 127.6 1.0
AL E:ALF1002 2.8 127.6 1.0
CB E:THR238 2.9 119.0 1.0
OE1 E:GLU262 3.0 119.5 1.0
PB E:ADP1001 3.1 127.6 1.0
O1A E:ADP1001 3.2 127.6 1.0
O2B E:ADP1001 3.3 127.6 1.0
O2A E:ADP1001 3.6 127.6 1.0
PA E:ADP1001 3.7 127.6 1.0
CD E:GLU262 3.7 119.5 1.0
OE2 E:GLU262 3.8 119.5 1.0
N E:THR238 3.9 119.0 1.0
O3A E:ADP1001 3.9 127.6 1.0
CG2 E:THR238 3.9 119.0 1.0
CA E:THR238 4.0 119.0 1.0
NH1 E:ARG271 4.2 131.7 1.0
F2 E:ALF1002 4.2 127.6 1.0
F3 E:ALF1002 4.2 127.6 1.0
O3B E:ADP1001 4.5 127.6 1.0
OD2 E:ASP343 4.6 118.0 1.0
OD1 E:ASP343 4.8 118.0 1.0
SD E:MET263 4.9 137.5 1.0
CG E:GLU262 4.9 119.5 1.0

Magnesium binding site 5 out of 5 in 7t23

Go back to Magnesium Binding Sites List in 7t23
Magnesium binding site 5 out of 5 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg1003

b:133.4
occ:1.00
 F1 F:ALF1002 2.0 133.4 1.0
F4 F:ALF1002 2.0 133.4 1.0
OG1 F:THR238 2.0 146.4 1.0
O3B F:ADP1001 2.0 144.0 1.0
AL F:ALF1002 2.8 133.4 1.0
CB F:THR238 2.9 146.4 1.0
PB F:ADP1001 3.0 144.0 1.0
O2A F:ADP1001 3.0 144.0 1.0
O3A F:ADP1001 3.2 144.0 1.0
O2B F:ADP1001 3.3 144.0 1.0
PA F:ADP1001 3.6 144.0 1.0
N F:THR238 3.8 146.4 1.0
CA F:THR238 3.9 146.4 1.0
CG2 F:THR238 3.9 146.4 1.0
OE1 F:GLU262 4.0 156.3 1.0
O1A F:ADP1001 4.2 144.0 1.0
F3 F:ALF1002 4.2 133.4 1.0
F2 F:ALF1002 4.2 133.4 1.0
O1B F:ADP1001 4.4 144.0 1.0
OD1 F:ASP343 4.4 155.8 1.0
SD F:MET263 4.6 151.8 1.0
NH1 F:ARG271 4.7 150.1 1.0
CD F:GLU262 4.7 156.3 1.0
OE2 F:GLU262 4.8 156.3 1.0
OD2 F:ASP343 4.9 155.8 1.0

Reference:

A.J.Oakley, Z.Q.Xu. Sequence of Conformation Changes of Dnab Helicase During Dna Unwinding and Priming in Escherichia Coli To Be Published.
Page generated: Thu Oct 3 09:02:31 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy