Magnesium in PDB 7tf9: L. Monocytogenes Gs(14)-Q-Glnr Peptide

All present enzymatic activity of L. Monocytogenes Gs(14)-Q-Glnr Peptide:
6.3.1.2;

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Magnesium atom in the L. Monocytogenes Gs(14)-Q-Glnr Peptide (pdb code 7tf9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 28 binding sites of Magnesium where determined in the L. Monocytogenes Gs(14)-Q-Glnr Peptide, PDB code: 7tf9:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 28 in the L. Monocytogenes Gs(14)-Q-Glnr Peptide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of L. Monocytogenes Gs(14)-Q-Glnr Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:100.3 occ:1.00 OE1 A:GLU196 2.1 100.2 1.0 OE2 A:GLU189 2.5 98.2 1.0 OE2 A:GLU134 2.8 96.3 1.0 HG3 A:GLN503 2.9 20.0 1.0 CD A:GLU196 3.2 100.2 1.0 CD A:GLU189 3.2 98.2 1.0 OE1 A:GLU189 3.3 98.2 1.0 OE2 A:GLU196 3.5 100.2 1.0 CD A:GLU134 3.6 96.3 1.0 CG A:GLN503 3.8 20.0 1.0 CD A:GLN503 4.0 20.0 1.0 OE1 A:GLN503 4.2 20.0 1.0 CG A:GLU134 4.3 96.3 1.0 H3 A:GLN503 4.3 20.0 1.0 HB3 A:GLN503 4.3 20.0 1.0 HE22 A:GLN503 4.3 20.0 1.0 OE1 A:GLU134 4.4 96.3 1.0 NE2 A:HIS187 4.4 100.4 1.0 NE2 A:GLN503 4.5 20.0 1.0 CG A:GLU196 4.5 100.2 1.0 CG A:GLU189 4.5 98.2 1.0 HG2 A:GLN503 4.5 20.0 1.0 CB A:GLN503 4.7 20.0 1.0 OE1 A:GLU132 4.7 101.3 1.0 CB A:GLU196 4.8 100.2 1.0 CD2 A:HIS245 4.9 98.1 1.0 CE1 A:HIS187 4.9 100.4 1.0 NE2 A:HIS245 4.9 98.1 1.0

Magnesium binding site 2 out of 28 in the L. Monocytogenes Gs(14)-Q-Glnr Peptide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of L. Monocytogenes Gs(14)-Q-Glnr Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:97.1 occ:1.00 OE2 A:GLU333 2.2 100.2 1.0 OE1 A:GLU132 2.4 101.3 1.0 CD2 A:HIS245 2.7 98.1 1.0 CD A:GLU333 3.1 100.2 1.0 CD A:GLU132 3.3 101.3 1.0 CG A:HIS245 3.4 98.1 1.0 OE1 A:GLU333 3.5 100.2 1.0 OE2 A:GLU132 3.6 101.3 1.0 CB A:HIS245 3.7 98.1 1.0 NE2 A:HIS245 3.8 98.1 1.0 OE2 N:GLU65 4.1 112.8 1.0 OE1 N:GLU65 4.2 112.8 1.0 CG A:GLU333 4.4 100.2 1.0 CD N:GLU65 4.6 112.8 1.0 CG A:GLU132 4.6 101.3 1.0 NH1 A:ARG335 4.6 98.9 1.0 ND1 A:HIS245 4.7 98.1 1.0 CE1 A:HIS245 4.8 98.1 1.0 CG A:ARG335 5.0 98.9 1.0 CB A:GLU132 5.0 101.3 1.0

Magnesium binding site 3 out of 28 in the L. Monocytogenes Gs(14)-Q-Glnr Peptide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of L. Monocytogenes Gs(14)-Q-Glnr Peptide within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg501 b:100.3 occ:1.00 OE1 B:GLU196 2.1 100.2 1.0 OE2 B:GLU189 2.5 98.2 1.0 OE2 B:GLU134 2.8 96.3 1.0 HG3 B:GLN503 3.1 20.0 1.0 CD B:GLU196 3.2 100.2 1.0 CD B:GLU189 3.2 98.2 1.0 OE1 B:GLU189 3.3 98.2 1.0 OE2 B:GLU196 3.5 100.2 1.0 CD B:GLU134 3.6 96.3 1.0 CG B:GLN503 4.0 20.0 1.0 CD B:GLN503 4.0 20.0 1.0 HE22 B:GLN503 4.2 20.0 1.0 CG B:GLU134 4.3 96.3 1.0 HB3 B:GLN503 4.3 20.0 1.0 H3 B:GLN503 4.3 20.0 1.0 OE1 B:GLN503 4.3 20.0 1.0 OE1 B:GLU134 4.4 96.3 1.0 NE2 B:HIS187 4.5 100.4 1.0 CG B:GLU196 4.5 100.2 1.0 NE2 B:GLN503 4.5 20.0 1.0 CG B:GLU189 4.5 98.2 1.0 CB B:GLN503 4.7 20.0 1.0 HG2 B:GLN503 4.7 20.0 1.0 OE1 B:GLU132 4.7 101.3 1.0 CB B:GLU196 4.8 100.2 1.0 CE1 B:HIS187 4.8 100.4 1.0 CD2 B:HIS245 4.9 98.1 1.0 NE2 B:HIS245 4.9 98.1 1.0

Magnesium binding site 4 out of 28 in the L. Monocytogenes Gs(14)-Q-Glnr Peptide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of L. Monocytogenes Gs(14)-Q-Glnr Peptide within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg502 b:97.1 occ:1.00 OE2 B:GLU333 2.2 100.2 1.0 OE1 B:GLU132 2.4 101.3 1.0 CD2 B:HIS245 2.7 98.1 1.0 CD B:GLU333 3.1 100.2 1.0 CD B:GLU132 3.3 101.3 1.0 CG B:HIS245 3.4 98.1 1.0 OE1 B:GLU333 3.5 100.2 1.0 OE2 B:GLU132 3.6 101.3 1.0 CB B:HIS245 3.7 98.1 1.0 NE2 B:HIS245 3.8 98.1 1.0 OE2 C:GLU65 4.1 112.8 1.0 OE1 C:GLU65 4.2 112.8 1.0 CG B:GLU333 4.4 100.2 1.0 CD C:GLU65 4.6 112.8 1.0 CG B:GLU132 4.6 101.3 1.0 NH1 B:ARG335 4.6 98.9 1.0 ND1 B:HIS245 4.7 98.1 1.0 CE1 B:HIS245 4.8 98.1 1.0 CG B:ARG335 5.0 98.9 1.0 CB B:GLU132 5.0 101.3 1.0

Magnesium binding site 5 out of 28 in the L. Monocytogenes Gs(14)-Q-Glnr Peptide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of L. Monocytogenes Gs(14)-Q-Glnr Peptide within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg501 b:100.3 occ:1.00 OE1 C:GLU196 2.1 100.2 1.0 OE2 C:GLU189 2.5 98.2 1.0 OE2 C:GLU134 2.8 96.3 1.0 HG3 C:GLN503 3.0 20.0 1.0 CD C:GLU196 3.2 100.2 1.0 CD C:GLU189 3.2 98.2 1.0 OE1 C:GLU189 3.3 98.2 1.0 OE2 C:GLU196 3.5 100.2 1.0 CD C:GLU134 3.6 96.3 1.0 CG C:GLN503 3.9 20.0 1.0 CD C:GLN503 4.0 20.0 1.0 OE1 C:GLN503 4.2 20.0 1.0 CG C:GLU134 4.3 96.3 1.0 H3 C:GLN503 4.3 20.0 1.0 HE22 C:GLN503 4.4 20.0 1.0 OE1 C:GLU134 4.4 96.3 1.0 HB3 C:GLN503 4.4 20.0 1.0 NE2 C:HIS187 4.5 100.4 1.0 NE2 C:GLN503 4.5 20.0 1.0 CG C:GLU196 4.5 100.2 1.0 CG C:GLU189 4.5 98.2 1.0 HG2 C:GLN503 4.6 20.0 1.0 OE1 C:GLU132 4.7 101.3 1.0 CB C:GLU196 4.8 100.2 1.0 CB C:GLN503 4.8 20.0 1.0 CD2 C:HIS245 4.9 98.1 1.0 CE1 C:HIS187 4.9 100.4 1.0 NE2 C:HIS245 4.9 98.1 1.0

Magnesium binding site 6 out of 28 in the L. Monocytogenes Gs(14)-Q-Glnr Peptide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of L. Monocytogenes Gs(14)-Q-Glnr Peptide within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg502 b:97.1 occ:1.00 OE2 C:GLU333 2.2 100.2 1.0 OE1 C:GLU132 2.4 101.3 1.0 CD2 C:HIS245 2.7 98.1 1.0 CD C:GLU333 3.1 100.2 1.0 CD C:GLU132 3.3 101.3 1.0 CG C:HIS245 3.4 98.1 1.0 OE1 C:GLU333 3.5 100.2 1.0 OE2 C:GLU132 3.6 101.3 1.0 CB C:HIS245 3.7 98.1 1.0 NE2 C:HIS245 3.8 98.1 1.0 OE2 Q:GLU65 4.1 112.8 1.0 OE1 Q:GLU65 4.2 112.8 1.0 CG C:GLU333 4.4 100.2 1.0 CD Q:GLU65 4.6 112.8 1.0 CG C:GLU132 4.6 101.3 1.0 NH1 C:ARG335 4.6 98.9 1.0 ND1 C:HIS245 4.7 98.1 1.0 CE1 C:HIS245 4.8 98.1 1.0 CG C:ARG335 5.0 98.9 1.0 CB C:GLU132 5.0 101.3 1.0

Magnesium binding site 7 out of 28 in the L. Monocytogenes Gs(14)-Q-Glnr Peptide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of L. Monocytogenes Gs(14)-Q-Glnr Peptide within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg501 b:100.3 occ:1.00 OE1 F:GLU196 2.1 100.2 1.0 OE2 F:GLU189 2.5 98.2 1.0 OE2 F:GLU134 2.8 96.3 1.0 HG3 F:GLN503 2.9 20.0 1.0 CD F:GLU196 3.2 100.2 1.0 CD F:GLU189 3.2 98.2 1.0 OE1 F:GLU189 3.3 98.2 1.0 OE2 F:GLU196 3.5 100.2 1.0 CD F:GLU134 3.6 96.3 1.0 CG F:GLN503 3.9 20.0 1.0 CD F:GLN503 4.0 20.0 1.0 H3 F:GLN503 4.2 20.0 1.0 OE1 F:GLN503 4.2 20.0 1.0 CG F:GLU134 4.3 96.3 1.0 HE22 F:GLN503 4.4 20.0 1.0 HB3 F:GLN503 4.4 20.0 1.0 OE1 F:GLU134 4.4 96.3 1.0 NE2 F:HIS187 4.5 100.4 1.0 CG F:GLU196 4.5 100.2 1.0 NE2 F:GLN503 4.5 20.0 1.0 CG F:GLU189 4.5 98.2 1.0 HG2 F:GLN503 4.5 20.0 1.0 CB F:GLN503 4.7 20.0 1.0 OE1 F:GLU132 4.7 101.3 1.0 CB F:GLU196 4.8 100.2 1.0 CE1 F:HIS187 4.8 100.4 1.0 CD2 F:HIS245 4.9 98.1 1.0 NE2 F:HIS245 4.9 98.1 1.0

Magnesium binding site 8 out of 28 in the L. Monocytogenes Gs(14)-Q-Glnr Peptide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of L. Monocytogenes Gs(14)-Q-Glnr Peptide within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg502 b:97.1 occ:1.00 OE2 F:GLU333 2.2 100.2 1.0 OE1 F:GLU132 2.4 101.3 1.0 CD2 F:HIS245 2.7 98.1 1.0 CD F:GLU333 3.1 100.2 1.0 CD F:GLU132 3.3 101.3 1.0 CG F:HIS245 3.4 98.1 1.0 OE1 F:GLU333 3.5 100.2 1.0 OE2 F:GLU132 3.6 101.3 1.0 CB F:HIS245 3.7 98.1 1.0 NE2 F:HIS245 3.8 98.1 1.0 OE2 G:GLU65 4.1 112.8 1.0 OE1 G:GLU65 4.2 112.8 1.0 CG F:GLU333 4.4 100.2 1.0 CD G:GLU65 4.6 112.8 1.0 CG F:GLU132 4.6 101.3 1.0 NH1 F:ARG335 4.6 98.9 1.0 ND1 F:HIS245 4.7 98.1 1.0 CE1 F:HIS245 4.8 98.1 1.0 CG F:ARG335 5.0 98.9 1.0 CB F:GLU132 5.0 101.3 1.0

Magnesium binding site 9 out of 28 in the L. Monocytogenes Gs(14)-Q-Glnr Peptide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of L. Monocytogenes Gs(14)-Q-Glnr Peptide within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg501 b:100.3 occ:1.00 OE1 G:GLU196 2.1 100.2 1.0 OE2 G:GLU189 2.5 98.2 1.0 OE2 G:GLU134 2.8 96.3 1.0 HG3 G:GLN503 3.0 20.0 1.0 CD G:GLU196 3.2 100.2 1.0 CD G:GLU189 3.2 98.2 1.0 OE1 G:GLU189 3.3 98.2 1.0 OE2 G:GLU196 3.5 100.2 1.0 CD G:GLU134 3.6 96.3 1.0 CG G:GLN503 3.9 20.0 1.0 CD G:GLN503 4.0 20.0 1.0 CG G:GLU134 4.3 96.3 1.0 OE1 G:GLN503 4.3 20.0 1.0 H3 G:GLN503 4.3 20.0 1.0 HE22 G:GLN503 4.4 20.0 1.0 OE1 G:GLU134 4.4 96.3 1.0 HB3 G:GLN503 4.4 20.0 1.0 NE2 G:HIS187 4.5 100.4 1.0 CG G:GLU196 4.5 100.2 1.0 NE2 G:GLN503 4.5 20.0 1.0 CG G:GLU189 4.5 98.2 1.0 HG2 G:GLN503 4.6 20.0 1.0 OE1 G:GLU132 4.7 101.3 1.0 CB G:GLU196 4.8 100.2 1.0 CB G:GLN503 4.8 20.0 1.0 CD2 G:HIS245 4.9 98.1 1.0 CE1 G:HIS187 4.9 100.4 1.0 NE2 G:HIS245 4.9 98.1 1.0

Magnesium binding site 10 out of 28 in the L. Monocytogenes Gs(14)-Q-Glnr Peptide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of L. Monocytogenes Gs(14)-Q-Glnr Peptide within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg502 b:97.1 occ:1.00 OE2 G:GLU333 2.2 100.2 1.0 OE1 G:GLU132 2.3 101.3 1.0 CD2 G:HIS245 2.7 98.1 1.0 CD G:GLU333 3.1 100.2 1.0 CD G:GLU132 3.3 101.3 1.0 CG G:HIS245 3.4 98.1 1.0 OE1 G:GLU333 3.5 100.2 1.0 OE2 G:GLU132 3.6 101.3 1.0 CB G:HIS245 3.7 98.1 1.0 NE2 G:HIS245 3.8 98.1 1.0 OE2 H:GLU65 4.1 112.8 1.0 OE1 H:GLU65 4.2 112.8 1.0 CG G:GLU333 4.4 100.2 1.0 CD H:GLU65 4.6 112.8 1.0 CG G:GLU132 4.6 101.3 1.0 NH1 G:ARG335 4.6 98.9 1.0 ND1 G:HIS245 4.7 98.1 1.0 CE1 G:HIS245 4.8 98.1 1.0 CG G:ARG335 5.0 98.9 1.0 CB G:GLU132 5.0 101.3 1.0

B.A.Travis, J.V.Peck, R.Salinas, B.Dopkins, N.Lent, V.D.Nguyen, M.J.Borgnia, R.G.Brennan, M.A.Schumacher. Molecular Dissection of the Glutamine Synthetase-Glnr Nitrogen Regulatory Circuitry in Gram-Positive Bacteria. Nat Commun V. 13 3793 2022.
ISSN: ESSN 2041-1723
PubMed: 35778410
DOI: 10.1038/S41467-022-31573-0