Magnesium in PDB 7tfe: L. Monocytogenes Gs(12) - Apo

All present enzymatic activity of L. Monocytogenes Gs(12) - Apo:
6.3.1.2;

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Magnesium atom in the L. Monocytogenes Gs(12) - Apo (pdb code 7tfe). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 24 binding sites of Magnesium where determined in the L. Monocytogenes Gs(12) - Apo, PDB code: 7tfe:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 24 in the L. Monocytogenes Gs(12) - Apo


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of L. Monocytogenes Gs(12) - Apo within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:101.4 occ:1.00 OE1 A:GLU196 2.1 97.1 1.0 OE2 A:GLU189 2.6 102.5 1.0 OE2 A:GLU134 2.7 96.3 1.0 CD A:GLU196 3.2 97.1 1.0 CD A:GLU189 3.3 102.5 1.0 OE1 A:GLU189 3.4 102.5 1.0 CD A:GLU134 3.6 96.3 1.0 OE2 A:GLU196 3.6 97.1 1.0 OE1 A:GLU134 4.3 96.3 1.0 CG A:GLU134 4.3 96.3 1.0 CG A:GLU196 4.5 97.1 1.0 NE2 A:HIS187 4.6 98.5 1.0 OH A:TYR156 4.6 104.2 1.0 CG A:GLU189 4.6 102.5 1.0 NE2 A:HIS245 4.7 96.5 1.0 CD2 A:HIS245 4.8 96.5 1.0 CB A:GLU196 4.9 97.1 1.0 OE1 A:GLU132 5.0 96.3 1.0

Magnesium binding site 2 out of 24 in the L. Monocytogenes Gs(12) - Apo


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of L. Monocytogenes Gs(12) - Apo within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:101.9 occ:1.00 OE2 A:GLU333 2.1 102.1 1.0 CD2 A:HIS245 2.3 96.5 1.0 OE1 A:GLU132 2.6 96.3 1.0 CG A:HIS245 2.9 96.5 1.0 CD A:GLU333 3.0 102.1 1.0 CB A:HIS245 3.1 96.5 1.0 OE1 A:GLU333 3.5 102.1 1.0 NE2 A:HIS245 3.5 96.5 1.0 CD A:GLU132 3.6 96.3 1.0 OE2 A:GLU132 4.0 96.3 1.0 CG A:GLU333 4.1 102.1 1.0 ND1 A:HIS245 4.2 96.5 1.0 CE1 A:HIS245 4.4 96.5 1.0 CA A:HIS245 4.6 96.5 1.0 CG A:ARG335 4.6 103.1 1.0 CG A:GLU132 4.7 96.3 1.0 NH1 A:ARG335 4.8 103.1 1.0

Magnesium binding site 3 out of 24 in the L. Monocytogenes Gs(12) - Apo


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of L. Monocytogenes Gs(12) - Apo within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg501 b:103.2 occ:1.00 OE1 G:GLU196 2.1 97.6 1.0 OE2 G:GLU189 2.6 102.1 1.0 OE2 G:GLU134 2.7 99.8 1.0 CD G:GLU196 3.2 97.6 1.0 CD G:GLU189 3.3 102.1 1.0 OE1 G:GLU189 3.4 102.1 1.0 CD G:GLU134 3.6 99.8 1.0 OE2 G:GLU196 3.6 97.6 1.0 OE1 G:GLU134 4.3 99.8 1.0 CG G:GLU134 4.3 99.8 1.0 CG G:GLU196 4.5 97.6 1.0 NE2 G:HIS187 4.6 98.3 1.0 OH G:TYR156 4.6 105.8 1.0 CG G:GLU189 4.6 102.1 1.0 NE2 G:HIS245 4.7 97.8 1.0 CD2 G:HIS245 4.8 97.8 1.0 CB G:GLU196 4.9 97.6 1.0 OE1 G:GLU132 5.0 96.7 1.0

Magnesium binding site 4 out of 24 in the L. Monocytogenes Gs(12) - Apo


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of L. Monocytogenes Gs(12) - Apo within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg502 b:106.7 occ:1.00 OE2 G:GLU333 2.1 102.0 1.0 CD2 G:HIS245 2.3 97.8 1.0 OE1 G:GLU132 2.6 96.7 1.0 CG G:HIS245 2.9 97.8 1.0 CD G:GLU333 3.0 102.0 1.0 CB G:HIS245 3.1 97.8 1.0 OE1 G:GLU333 3.5 102.0 1.0 NE2 G:HIS245 3.5 97.8 1.0 CD G:GLU132 3.6 96.7 1.0 OE2 G:GLU132 4.0 96.7 1.0 CG G:GLU333 4.1 102.0 1.0 ND1 G:HIS245 4.2 97.8 1.0 CE1 G:HIS245 4.4 97.8 1.0 CA G:HIS245 4.6 97.8 1.0 CG G:ARG335 4.6 103.7 1.0 CG G:GLU132 4.7 96.7 1.0 NH1 G:ARG335 4.8 103.7 1.0

Magnesium binding site 5 out of 24 in the L. Monocytogenes Gs(12) - Apo


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of L. Monocytogenes Gs(12) - Apo within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg501 b:100.8 occ:1.00 OE1 H:GLU196 2.1 93.9 1.0 OE2 H:GLU189 2.6 96.7 1.0 OE2 H:GLU134 2.7 96.0 1.0 CD H:GLU196 3.2 93.9 1.0 CD H:GLU189 3.3 96.7 1.0 OE1 H:GLU189 3.4 96.7 1.0 CD H:GLU134 3.6 96.0 1.0 OE2 H:GLU196 3.6 93.9 1.0 OE1 H:GLU134 4.3 96.0 1.0 CG H:GLU134 4.3 96.0 1.0 CG H:GLU196 4.5 93.9 1.0 NE2 H:HIS187 4.6 95.1 1.0 OH H:TYR156 4.6 99.5 1.0 CG H:GLU189 4.6 96.7 1.0 NE2 H:HIS245 4.7 97.6 1.0 CD2 H:HIS245 4.8 97.6 1.0 CB H:GLU196 4.9 93.9 1.0 OE1 H:GLU132 5.0 94.7 1.0

Magnesium binding site 6 out of 24 in the L. Monocytogenes Gs(12) - Apo


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of L. Monocytogenes Gs(12) - Apo within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg502 b:103.3 occ:1.00 OE2 H:GLU333 2.1 104.4 1.0 CD2 H:HIS245 2.3 97.6 1.0 OE1 H:GLU132 2.6 94.7 1.0 CG H:HIS245 2.9 97.6 1.0 CD H:GLU333 3.0 104.4 1.0 CB H:HIS245 3.1 97.6 1.0 OE1 H:GLU333 3.5 104.4 1.0 NE2 H:HIS245 3.5 97.6 1.0 CD H:GLU132 3.6 94.7 1.0 OE2 H:GLU132 4.0 94.7 1.0 CG H:GLU333 4.1 104.4 1.0 ND1 H:HIS245 4.2 97.6 1.0 CE1 H:HIS245 4.4 97.6 1.0 CA H:HIS245 4.6 97.6 1.0 CG H:ARG335 4.6 106.3 1.0 CG H:GLU132 4.7 94.7 1.0 NH1 H:ARG335 4.8 106.3 1.0

Magnesium binding site 7 out of 24 in the L. Monocytogenes Gs(12) - Apo


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of L. Monocytogenes Gs(12) - Apo within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg501 b:102.8 occ:1.00 OE1 I:GLU196 2.1 98.7 1.0 OE2 I:GLU189 2.6 103.2 1.0 OE2 I:GLU134 2.7 97.1 1.0 CD I:GLU196 3.2 98.7 1.0 CD I:GLU189 3.3 103.2 1.0 OE1 I:GLU189 3.4 103.2 1.0 CD I:GLU134 3.6 97.1 1.0 OE2 I:GLU196 3.6 98.7 1.0 OE1 I:GLU134 4.3 97.1 1.0 CG I:GLU134 4.3 97.1 1.0 CG I:GLU196 4.5 98.7 1.0 NE2 I:HIS187 4.6 99.8 1.0 OH I:TYR156 4.6 104.9 1.0 CG I:GLU189 4.6 103.2 1.0 NE2 I:HIS245 4.7 97.1 1.0 CD2 I:HIS245 4.8 97.1 1.0 CB I:GLU196 4.9 98.7 1.0 OE1 I:GLU132 5.0 97.3 1.0

Magnesium binding site 8 out of 24 in the L. Monocytogenes Gs(12) - Apo


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of L. Monocytogenes Gs(12) - Apo within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg502 b:101.3 occ:1.00 OE2 I:GLU333 2.1 102.5 1.0 CD2 I:HIS245 2.3 97.1 1.0 OE1 I:GLU132 2.6 97.3 1.0 CG I:HIS245 2.9 97.1 1.0 CD I:GLU333 3.0 102.5 1.0 CB I:HIS245 3.1 97.1 1.0 OE1 I:GLU333 3.5 102.5 1.0 NE2 I:HIS245 3.5 97.1 1.0 CD I:GLU132 3.6 97.3 1.0 OE2 I:GLU132 4.0 97.3 1.0 CG I:GLU333 4.1 102.5 1.0 ND1 I:HIS245 4.2 97.1 1.0 CE1 I:HIS245 4.4 97.1 1.0 CA I:HIS245 4.6 97.1 1.0 CG I:ARG335 4.6 102.7 1.0 CG I:GLU132 4.7 97.3 1.0 NH1 I:ARG335 4.8 102.7 1.0

Magnesium binding site 9 out of 24 in the L. Monocytogenes Gs(12) - Apo


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of L. Monocytogenes Gs(12) - Apo within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg501 b:102.0 occ:1.00 OE1 B:GLU196 2.1 97.9 1.0 OE2 B:GLU189 2.6 101.6 1.0 OE2 B:GLU134 2.7 99.8 1.0 CD B:GLU196 3.2 97.9 1.0 CD B:GLU189 3.3 101.6 1.0 OE1 B:GLU189 3.4 101.6 1.0 CD B:GLU134 3.6 99.8 1.0 OE2 B:GLU196 3.6 97.9 1.0 OE1 B:GLU134 4.3 99.8 1.0 CG B:GLU134 4.3 99.8 1.0 CG B:GLU196 4.5 97.9 1.0 NE2 B:HIS187 4.6 98.3 1.0 OH B:TYR156 4.6 105.9 1.0 CG B:GLU189 4.6 101.6 1.0 NE2 B:HIS245 4.7 97.6 1.0 CD2 B:HIS245 4.8 97.6 1.0 CB B:GLU196 4.9 97.9 1.0 OE1 B:GLU132 5.0 97.3 1.0

Magnesium binding site 10 out of 24 in the L. Monocytogenes Gs(12) - Apo


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of L. Monocytogenes Gs(12) - Apo within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg502 b:105.6 occ:1.00 OE2 B:GLU333 2.1 101.2 1.0 CD2 B:HIS245 2.3 97.6 1.0 OE1 B:GLU132 2.6 97.3 1.0 CG B:HIS245 2.9 97.6 1.0 CD B:GLU333 3.0 101.2 1.0 CB B:HIS245 3.1 97.6 1.0 OE1 B:GLU333 3.5 101.2 1.0 NE2 B:HIS245 3.5 97.6 1.0 CD B:GLU132 3.6 97.3 1.0 OE2 B:GLU132 4.0 97.3 1.0 CG B:GLU333 4.1 101.2 1.0 ND1 B:HIS245 4.2 97.6 1.0 CE1 B:HIS245 4.4 97.6 1.0 CA B:HIS245 4.6 97.6 1.0 CG B:ARG335 4.6 102.5 1.0 CG B:GLU132 4.7 97.3 1.0 NH1 B:ARG335 4.8 102.5 1.0

B.A.Travis, J.V.Peck, R.Salinas, B.Dopkins, N.Lent, V.D.Nguyen, M.J.Borgnia, R.G.Brennan, M.A.Schumacher. Molecular Dissection of the Glutamine Synthetase-Glnr Nitrogen Regulatory Circuitry in Gram-Positive Bacteria. Nat Commun V. 13 3793 2022.
ISSN: ESSN 2041-1723
PubMed: 35778410
DOI: 10.1038/S41467-022-31573-0