Magnesium in PDB 7trg: The Beta-Tubulin Folding Intermediate I

The structure of The Beta-Tubulin Folding Intermediate I also contains other interesting chemical elements:

Aluminium	(Al)	8 atoms
Fluorine	(F)	24 atoms

The binding sites of Magnesium atom in the The Beta-Tubulin Folding Intermediate I (pdb code 7trg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the The Beta-Tubulin Folding Intermediate I, PDB code: 7trg:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in the The Beta-Tubulin Folding Intermediate I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Beta-Tubulin Folding Intermediate I within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:55.9 occ:1.00 F1 B:AF3603 2.0 57.3 1.0 O1B B:ADP602 2.0 55.9 1.0 OD2 B:ASP99 2.0 62.1 1.0 O1A B:ADP602 2.7 61.1 1.0 CG B:ASP99 2.7 59.6 1.0 OD1 B:ASP99 2.8 57.9 1.0 PB B:ADP602 3.0 48.2 1.0 O3B B:ADP602 3.2 36.2 1.0 AL B:AF3603 3.6 56.9 1.0 O3A B:ADP602 3.6 46.5 1.0 PA B:ADP602 3.6 60.9 1.0 OG B:SER170 3.8 55.4 1.0 O5' B:ADP602 3.9 48.0 1.0 CB B:ASP99 4.1 55.4 1.0 O2B B:ADP602 4.4 51.0 1.0 NZ B:LYS171 4.5 56.9 1.0 N B:GLY100 4.5 44.7 1.0 F3 B:AF3603 4.6 49.0 1.0 OD2 B:ASP394 4.6 54.4 1.0 CE B:LYS171 4.6 52.9 1.0 CA B:ASP99 4.7 47.3 1.0 F2 B:AF3603 4.7 69.9 1.0 CB B:SER170 4.8 44.4 1.0 C B:ASP99 4.9 44.4 1.0 O B:SER167 4.9 49.1 1.0

Magnesium binding site 2 out of 8 in the The Beta-Tubulin Folding Intermediate I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Beta-Tubulin Folding Intermediate I within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:83.3 occ:1.00 O3A C:ADP602 1.9 80.4 1.0 O1B C:ADP602 2.2 80.9 1.0 PB C:ADP602 2.4 71.1 1.0 OD2 C:ASP92 2.7 90.6 1.0 O1A C:ADP602 2.7 78.6 1.0 PA C:ADP602 2.9 81.8 1.0 O3B C:ADP602 2.9 74.1 1.0 F1 C:AF3603 3.1 79.4 1.0 AL C:AF3603 3.6 72.2 1.0 CG C:ASP92 3.6 84.1 1.0 O2B C:ADP602 3.8 74.5 1.0 O5' C:ADP602 3.8 71.7 1.0 OD1 C:ASP92 3.9 87.5 1.0 NZ C:LYS166 3.9 72.0 1.0 C5' C:ADP602 4.0 70.7 1.0 O2A C:ADP602 4.1 77.8 1.0 F3 C:AF3603 4.1 78.1 1.0 N C:GLY93 4.3 71.4 1.0 OG C:SER165 4.6 75.0 1.0 F2 C:AF3603 4.8 74.1 1.0 OD2 C:ASP391 4.9 86.8 1.0 CA C:GLY93 4.9 63.5 1.0 CB C:ASP92 5.0 70.1 1.0

Magnesium binding site 3 out of 8 in the The Beta-Tubulin Folding Intermediate I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Beta-Tubulin Folding Intermediate I within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg601 b:73.9 occ:1.00 O1B D:ADP602 1.9 83.8 1.0 OD1 D:ASP104 2.4 85.2 1.0 O1A D:ADP602 2.6 83.9 1.0 PB D:ADP602 2.9 74.4 1.0 O3A D:ADP602 3.1 85.4 1.0 CG D:ASP104 3.3 81.9 1.0 O3B D:ADP602 3.3 67.4 1.0 OD2 D:ASP104 3.4 90.0 1.0 PA D:ADP602 3.4 92.7 1.0 O5' D:ADP602 3.8 76.0 1.0 AL D:AF3603 3.9 84.3 1.0 F1 D:AF3603 4.1 74.0 1.0 F2 D:AF3603 4.3 86.0 1.0 O2B D:ADP602 4.3 71.3 1.0 N D:GLY105 4.4 76.8 1.0 O D:THR172 4.4 76.5 1.0 F3 D:AF3603 4.6 82.5 1.0 CB D:ASP104 4.7 68.4 1.0 O2A D:ADP602 4.8 81.1 1.0 OD2 D:ASP404 4.9 81.4 1.0

Magnesium binding site 4 out of 8 in the The Beta-Tubulin Folding Intermediate I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Beta-Tubulin Folding Intermediate I within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg601 b:53.3 occ:1.00 F1 E:AF3603 2.3 60.0 1.0 OD1 E:ASP97 2.3 73.8 1.0 O3A E:ADP602 2.6 67.3 1.0 O1B E:ADP602 2.8 73.5 1.0 PB E:ADP602 3.2 66.4 1.0 CG E:ASP97 3.3 71.6 1.0 OD2 E:ASP97 3.6 77.5 1.0 O1A E:ADP602 3.6 70.5 1.0 PA E:ADP602 3.7 72.6 1.0 AL E:AF3603 3.8 64.4 1.0 NZ E:LYS170 3.8 69.5 1.0 O3B E:ADP602 3.8 71.7 1.0 OG E:SER169 4.4 72.5 1.0 O2B E:ADP602 4.4 57.7 1.0 O E:THR166 4.5 55.1 1.0 O2A E:ADP602 4.6 65.4 1.0 N E:GLY98 4.6 60.5 1.0 CB E:ASP97 4.6 57.2 1.0 F2 E:AF3603 4.7 68.6 1.0 CG2 E:THR166 4.7 52.5 1.0 C5' E:ADP602 4.8 66.8 1.0 O5' E:ADP602 4.8 67.6 1.0 CE E:LYS170 4.9 61.8 1.0 F3 E:AF3603 5.0 74.6 1.0

Magnesium binding site 5 out of 8 in the The Beta-Tubulin Folding Intermediate I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of The Beta-Tubulin Folding Intermediate I within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg601 b:78.1 occ:1.00 OD1 F:ASP104 2.4 78.1 1.0 O1A F:ADP602 2.5 78.4 1.0 O3B F:ADP602 3.0 71.8 1.0 O1B F:ADP602 3.0 66.1 1.0 CG F:ASP104 3.3 75.6 1.0 OD2 F:ASP104 3.3 79.9 1.0 PB F:ADP602 3.5 59.7 1.0 F3 F:AF3603 3.7 77.0 1.0 PA F:ADP602 3.7 83.6 1.0 O3A F:ADP602 4.0 64.8 1.0 OD1 F:ASP407 4.1 74.9 1.0 O F:SER170 4.1 70.7 1.0 AL F:AF3603 4.2 79.6 1.0 F1 F:AF3603 4.3 83.1 1.0 OG F:SER170 4.4 69.2 1.0 O2A F:ADP602 4.4 73.8 1.0 CE F:LYS174 4.5 67.4 1.0 CB F:ASP104 4.7 67.5 1.0 N F:GLY105 4.8 63.2 1.0 O2B F:ADP602 4.9 60.7 1.0 O5' F:ADP602 4.9 70.2 1.0 C5' F:ADP602 5.0 62.4 1.0

Magnesium binding site 6 out of 8 in the The Beta-Tubulin Folding Intermediate I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of The Beta-Tubulin Folding Intermediate I within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg601 b:66.5 occ:1.00 OD2 G:ASP88 2.4 85.2 1.0 O3A G:ADP602 2.7 77.7 1.0 O1B G:ADP602 3.3 78.5 1.0 O3B G:ADP602 3.4 80.8 1.0 CG G:ASP88 3.4 84.5 1.0 PB G:ADP602 3.4 79.2 1.0 OD1 G:ASP88 3.6 88.1 1.0 O1A G:ADP602 3.7 84.9 1.0 PA G:ADP602 3.8 89.1 1.0 O G:SER155 4.0 62.7 1.0 F1 G:AF3603 4.0 85.5 1.0 C5' G:ADP602 4.5 69.2 1.0 N G:GLY89 4.6 72.9 1.0 OG G:SER155 4.7 76.0 1.0 F2 G:AF3603 4.7 80.3 1.0 OD2 G:ASP394 4.7 85.2 1.0 O5' G:ADP602 4.7 77.7 1.0 O2B G:ADP602 4.7 70.9 1.0 CB G:ASP88 4.7 75.3 1.0 AL G:AF3603 4.8 84.5 1.0 O2A G:ADP602 4.8 80.7 1.0 CA G:SER155 4.9 68.1 1.0 C G:SER155 4.9 68.0 1.0 CE G:LYS159 4.9 70.3 1.0

Magnesium binding site 7 out of 8 in the The Beta-Tubulin Folding Intermediate I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of The Beta-Tubulin Folding Intermediate I within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg601 b:55.2 occ:1.00 F1 H:AF3603 2.0 76.2 1.0 O1B H:ADP602 2.0 74.7 1.0 OD1 H:ASP93 2.6 84.7 1.0 OD2 H:ASP93 2.8 87.6 1.0 O1A H:ADP602 3.0 79.4 1.0 CG H:ASP93 3.0 81.1 1.0 PB H:ADP602 3.3 63.9 1.0 O3B H:ADP602 3.6 56.0 1.0 AL H:AF3603 3.7 75.4 1.0 O3A H:ADP602 3.8 67.2 1.0 PA H:ADP602 3.9 77.2 1.0 O5' H:ADP602 4.2 76.9 1.0 O H:SER159 4.3 61.8 1.0 CB H:ASP93 4.4 68.8 1.0 CE H:LYS163 4.5 74.9 1.0 O2B H:ADP602 4.5 72.2 1.0 N H:GLY94 4.6 66.1 1.0 F3 H:AF3603 4.7 63.3 1.0 F2 H:AF3603 4.7 77.2 1.0 CA H:ASP93 4.9 66.6 1.0

Magnesium binding site 8 out of 8 in the The Beta-Tubulin Folding Intermediate I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of The Beta-Tubulin Folding Intermediate I within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg601 b:70.6 occ:1.00 F1 I:AF3603 2.0 63.2 1.0 OD1 I:ASP90 2.1 84.2 1.0 O1B I:ADP602 2.2 65.8 1.0 OD2 I:ASP90 2.5 78.9 1.0 CG I:ASP90 2.6 75.9 1.0 O1A I:ADP602 2.9 67.7 1.0 PB I:ADP602 3.3 58.2 1.0 AL I:AF3603 3.5 58.7 1.0 O3B I:ADP602 3.6 47.9 1.0 O3A I:ADP602 3.7 57.8 1.0 PA I:ADP602 3.8 72.2 1.0 CB I:ASP90 4.1 68.7 1.0 O5' I:ADP602 4.1 71.1 1.0 OG1 I:THR158 4.1 71.0 1.0 NZ I:LYS159 4.4 67.2 1.0 F2 I:AF3603 4.4 66.5 1.0 F3 I:AF3603 4.6 50.6 1.0 O2B I:ADP602 4.6 62.8 1.0 N I:GLY91 4.6 63.5 1.0 OG I:SER155 4.6 71.3 1.0 O I:SER155 4.7 64.7 1.0 CA I:ASP90 4.8 65.0 1.0 OD2 I:ASP393 4.8 71.2 1.0

D.Gestaut, Y.Zhao, J.Park, B.Ma, A.Leitner, M.Collier, G.Pintilie, S.H.Roh, W.Chiu, J.Frydman. Structural Visualization of the Tubulin Folding Pathway Directed By Human Chaperonin Tric/Cct. Cell V. 185 4770 2022.
ISSN: ISSN 1097-4172
PubMed: 36493755
DOI: 10.1016/J.CELL.2022.11.014