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Magnesium in PDB 7trg: The Beta-Tubulin Folding Intermediate I

Other elements in 7trg:

The structure of The Beta-Tubulin Folding Intermediate I also contains other interesting chemical elements:

Aluminium (Al) 8 atoms
Fluorine (F) 24 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Beta-Tubulin Folding Intermediate I (pdb code 7trg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the The Beta-Tubulin Folding Intermediate I, PDB code: 7trg:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in 7trg

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Magnesium binding site 1 out of 8 in the The Beta-Tubulin Folding Intermediate I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Beta-Tubulin Folding Intermediate I within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:55.9
occ:1.00
F1 B:AF3603 2.0 57.3 1.0
O1B B:ADP602 2.0 55.9 1.0
OD2 B:ASP99 2.0 62.1 1.0
O1A B:ADP602 2.7 61.1 1.0
CG B:ASP99 2.7 59.6 1.0
OD1 B:ASP99 2.8 57.9 1.0
PB B:ADP602 3.0 48.2 1.0
O3B B:ADP602 3.2 36.2 1.0
AL B:AF3603 3.6 56.9 1.0
O3A B:ADP602 3.6 46.5 1.0
PA B:ADP602 3.6 60.9 1.0
OG B:SER170 3.8 55.4 1.0
O5' B:ADP602 3.9 48.0 1.0
CB B:ASP99 4.1 55.4 1.0
O2B B:ADP602 4.4 51.0 1.0
NZ B:LYS171 4.5 56.9 1.0
N B:GLY100 4.5 44.7 1.0
F3 B:AF3603 4.6 49.0 1.0
OD2 B:ASP394 4.6 54.4 1.0
CE B:LYS171 4.6 52.9 1.0
CA B:ASP99 4.7 47.3 1.0
F2 B:AF3603 4.7 69.9 1.0
CB B:SER170 4.8 44.4 1.0
C B:ASP99 4.9 44.4 1.0
O B:SER167 4.9 49.1 1.0

Magnesium binding site 2 out of 8 in 7trg

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Magnesium binding site 2 out of 8 in the The Beta-Tubulin Folding Intermediate I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Beta-Tubulin Folding Intermediate I within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg601

b:83.3
occ:1.00
O3A C:ADP602 1.9 80.4 1.0
O1B C:ADP602 2.2 80.9 1.0
PB C:ADP602 2.4 71.1 1.0
OD2 C:ASP92 2.7 90.6 1.0
O1A C:ADP602 2.7 78.6 1.0
PA C:ADP602 2.9 81.8 1.0
O3B C:ADP602 2.9 74.1 1.0
F1 C:AF3603 3.1 79.4 1.0
AL C:AF3603 3.6 72.2 1.0
CG C:ASP92 3.6 84.1 1.0
O2B C:ADP602 3.8 74.5 1.0
O5' C:ADP602 3.8 71.7 1.0
OD1 C:ASP92 3.9 87.5 1.0
NZ C:LYS166 3.9 72.0 1.0
C5' C:ADP602 4.0 70.7 1.0
O2A C:ADP602 4.1 77.8 1.0
F3 C:AF3603 4.1 78.1 1.0
N C:GLY93 4.3 71.4 1.0
OG C:SER165 4.6 75.0 1.0
F2 C:AF3603 4.8 74.1 1.0
OD2 C:ASP391 4.9 86.8 1.0
CA C:GLY93 4.9 63.5 1.0
CB C:ASP92 5.0 70.1 1.0

Magnesium binding site 3 out of 8 in 7trg

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Magnesium binding site 3 out of 8 in the The Beta-Tubulin Folding Intermediate I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Beta-Tubulin Folding Intermediate I within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg601

b:73.9
occ:1.00
O1B D:ADP602 1.9 83.8 1.0
OD1 D:ASP104 2.4 85.2 1.0
O1A D:ADP602 2.6 83.9 1.0
PB D:ADP602 2.9 74.4 1.0
O3A D:ADP602 3.1 85.4 1.0
CG D:ASP104 3.3 81.9 1.0
O3B D:ADP602 3.3 67.4 1.0
OD2 D:ASP104 3.4 90.0 1.0
PA D:ADP602 3.4 92.7 1.0
O5' D:ADP602 3.8 76.0 1.0
AL D:AF3603 3.9 84.3 1.0
F1 D:AF3603 4.1 74.0 1.0
F2 D:AF3603 4.3 86.0 1.0
O2B D:ADP602 4.3 71.3 1.0
N D:GLY105 4.4 76.8 1.0
O D:THR172 4.4 76.5 1.0
F3 D:AF3603 4.6 82.5 1.0
CB D:ASP104 4.7 68.4 1.0
O2A D:ADP602 4.8 81.1 1.0
OD2 D:ASP404 4.9 81.4 1.0

Magnesium binding site 4 out of 8 in 7trg

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Magnesium binding site 4 out of 8 in the The Beta-Tubulin Folding Intermediate I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Beta-Tubulin Folding Intermediate I within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg601

b:53.3
occ:1.00
F1 E:AF3603 2.3 60.0 1.0
OD1 E:ASP97 2.3 73.8 1.0
O3A E:ADP602 2.6 67.3 1.0
O1B E:ADP602 2.8 73.5 1.0
PB E:ADP602 3.2 66.4 1.0
CG E:ASP97 3.3 71.6 1.0
OD2 E:ASP97 3.6 77.5 1.0
O1A E:ADP602 3.6 70.5 1.0
PA E:ADP602 3.7 72.6 1.0
AL E:AF3603 3.8 64.4 1.0
NZ E:LYS170 3.8 69.5 1.0
O3B E:ADP602 3.8 71.7 1.0
OG E:SER169 4.4 72.5 1.0
O2B E:ADP602 4.4 57.7 1.0
O E:THR166 4.5 55.1 1.0
O2A E:ADP602 4.6 65.4 1.0
N E:GLY98 4.6 60.5 1.0
CB E:ASP97 4.6 57.2 1.0
F2 E:AF3603 4.7 68.6 1.0
CG2 E:THR166 4.7 52.5 1.0
C5' E:ADP602 4.8 66.8 1.0
O5' E:ADP602 4.8 67.6 1.0
CE E:LYS170 4.9 61.8 1.0
F3 E:AF3603 5.0 74.6 1.0

Magnesium binding site 5 out of 8 in 7trg

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Magnesium binding site 5 out of 8 in the The Beta-Tubulin Folding Intermediate I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of The Beta-Tubulin Folding Intermediate I within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg601

b:78.1
occ:1.00
OD1 F:ASP104 2.4 78.1 1.0
O1A F:ADP602 2.5 78.4 1.0
O3B F:ADP602 3.0 71.8 1.0
O1B F:ADP602 3.0 66.1 1.0
CG F:ASP104 3.3 75.6 1.0
OD2 F:ASP104 3.3 79.9 1.0
PB F:ADP602 3.5 59.7 1.0
F3 F:AF3603 3.7 77.0 1.0
PA F:ADP602 3.7 83.6 1.0
O3A F:ADP602 4.0 64.8 1.0
OD1 F:ASP407 4.1 74.9 1.0
O F:SER170 4.1 70.7 1.0
AL F:AF3603 4.2 79.6 1.0
F1 F:AF3603 4.3 83.1 1.0
OG F:SER170 4.4 69.2 1.0
O2A F:ADP602 4.4 73.8 1.0
CE F:LYS174 4.5 67.4 1.0
CB F:ASP104 4.7 67.5 1.0
N F:GLY105 4.8 63.2 1.0
O2B F:ADP602 4.9 60.7 1.0
O5' F:ADP602 4.9 70.2 1.0
C5' F:ADP602 5.0 62.4 1.0

Magnesium binding site 6 out of 8 in 7trg

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Magnesium binding site 6 out of 8 in the The Beta-Tubulin Folding Intermediate I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of The Beta-Tubulin Folding Intermediate I within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg601

b:66.5
occ:1.00
OD2 G:ASP88 2.4 85.2 1.0
O3A G:ADP602 2.7 77.7 1.0
O1B G:ADP602 3.3 78.5 1.0
O3B G:ADP602 3.4 80.8 1.0
CG G:ASP88 3.4 84.5 1.0
PB G:ADP602 3.4 79.2 1.0
OD1 G:ASP88 3.6 88.1 1.0
O1A G:ADP602 3.7 84.9 1.0
PA G:ADP602 3.8 89.1 1.0
O G:SER155 4.0 62.7 1.0
F1 G:AF3603 4.0 85.5 1.0
C5' G:ADP602 4.5 69.2 1.0
N G:GLY89 4.6 72.9 1.0
OG G:SER155 4.7 76.0 1.0
F2 G:AF3603 4.7 80.3 1.0
OD2 G:ASP394 4.7 85.2 1.0
O5' G:ADP602 4.7 77.7 1.0
O2B G:ADP602 4.7 70.9 1.0
CB G:ASP88 4.7 75.3 1.0
AL G:AF3603 4.8 84.5 1.0
O2A G:ADP602 4.8 80.7 1.0
CA G:SER155 4.9 68.1 1.0
C G:SER155 4.9 68.0 1.0
CE G:LYS159 4.9 70.3 1.0

Magnesium binding site 7 out of 8 in 7trg

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Magnesium binding site 7 out of 8 in the The Beta-Tubulin Folding Intermediate I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of The Beta-Tubulin Folding Intermediate I within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg601

b:55.2
occ:1.00
F1 H:AF3603 2.0 76.2 1.0
O1B H:ADP602 2.0 74.7 1.0
OD1 H:ASP93 2.6 84.7 1.0
OD2 H:ASP93 2.8 87.6 1.0
O1A H:ADP602 3.0 79.4 1.0
CG H:ASP93 3.0 81.1 1.0
PB H:ADP602 3.3 63.9 1.0
O3B H:ADP602 3.6 56.0 1.0
AL H:AF3603 3.7 75.4 1.0
O3A H:ADP602 3.8 67.2 1.0
PA H:ADP602 3.9 77.2 1.0
O5' H:ADP602 4.2 76.9 1.0
O H:SER159 4.3 61.8 1.0
CB H:ASP93 4.4 68.8 1.0
CE H:LYS163 4.5 74.9 1.0
O2B H:ADP602 4.5 72.2 1.0
N H:GLY94 4.6 66.1 1.0
F3 H:AF3603 4.7 63.3 1.0
F2 H:AF3603 4.7 77.2 1.0
CA H:ASP93 4.9 66.6 1.0

Magnesium binding site 8 out of 8 in 7trg

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Magnesium binding site 8 out of 8 in the The Beta-Tubulin Folding Intermediate I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of The Beta-Tubulin Folding Intermediate I within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg601

b:70.6
occ:1.00
F1 I:AF3603 2.0 63.2 1.0
OD1 I:ASP90 2.1 84.2 1.0
O1B I:ADP602 2.2 65.8 1.0
OD2 I:ASP90 2.5 78.9 1.0
CG I:ASP90 2.6 75.9 1.0
O1A I:ADP602 2.9 67.7 1.0
PB I:ADP602 3.3 58.2 1.0
AL I:AF3603 3.5 58.7 1.0
O3B I:ADP602 3.6 47.9 1.0
O3A I:ADP602 3.7 57.8 1.0
PA I:ADP602 3.8 72.2 1.0
CB I:ASP90 4.1 68.7 1.0
O5' I:ADP602 4.1 71.1 1.0
OG1 I:THR158 4.1 71.0 1.0
NZ I:LYS159 4.4 67.2 1.0
F2 I:AF3603 4.4 66.5 1.0
F3 I:AF3603 4.6 50.6 1.0
O2B I:ADP602 4.6 62.8 1.0
N I:GLY91 4.6 63.5 1.0
OG I:SER155 4.6 71.3 1.0
O I:SER155 4.7 64.7 1.0
CA I:ASP90 4.8 65.0 1.0
OD2 I:ASP393 4.8 71.2 1.0

Reference:

D.Gestaut, Y.Zhao, J.Park, B.Ma, A.Leitner, M.Collier, G.Pintilie, S.H.Roh, W.Chiu, J.Frydman. Structural Visualization of the Tubulin Folding Pathway Directed By Human Chaperonin Tric/Cct. Cell V. 185 4770 2022.
ISSN: ISSN 1097-4172
PubMed: 36493755
DOI: 10.1016/J.CELL.2022.11.014
Page generated: Thu Oct 3 09:26:23 2024

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