Magnesium in PDB 7ttn: The Beta-Tubulin Folding Intermediate II

The structure of The Beta-Tubulin Folding Intermediate II also contains other interesting chemical elements:

Aluminium	(Al)	8 atoms
Fluorine	(F)	24 atoms

The binding sites of Magnesium atom in the The Beta-Tubulin Folding Intermediate II (pdb code 7ttn). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the The Beta-Tubulin Folding Intermediate II, PDB code: 7ttn:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in the The Beta-Tubulin Folding Intermediate II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Beta-Tubulin Folding Intermediate II within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:64.8 occ:1.00 OD2 B:ASP99 2.2 73.1 1.0 OD1 B:ASP99 2.3 74.6 1.0 CG B:ASP99 2.5 69.5 1.0 O3A B:ADP603 3.1 56.2 1.0 O1A B:ADP603 3.6 64.7 1.0 O2B B:ADP603 3.7 61.4 1.0 PA B:ADP603 3.9 66.1 1.0 PB B:ADP603 4.0 57.6 1.0 CB B:ASP99 4.0 62.8 1.0 O5' B:ADP603 4.1 61.2 1.0 F1 B:AF3601 4.1 64.2 1.0 O1B B:ADP603 4.3 48.3 1.0 CB B:SER170 4.5 57.6 1.0 AL B:AF3601 4.5 59.1 1.0 OD2 B:ASP394 4.6 63.5 1.0 OG B:SER170 4.7 68.5 1.0 OG B:SER167 4.7 63.5 1.0 O B:SER167 4.7 64.5 1.0 N B:GLY100 4.7 51.6 1.0 CA B:ASP99 4.8 64.0 1.0 CA B:SER167 4.9 52.9 1.0 F2 B:AF3601 4.9 68.7 1.0

Magnesium binding site 2 out of 8 in the The Beta-Tubulin Folding Intermediate II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Beta-Tubulin Folding Intermediate II within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:81.5 occ:1.00 OD1 C:ASP92 1.9 79.5 1.0 O1A C:ADP602 2.0 70.5 1.0 O1B C:ADP602 2.0 77.9 1.0 PB C:ADP602 2.9 85.4 1.0 O2B C:ADP602 3.0 86.9 1.0 CG C:ASP92 3.0 78.7 1.0 PA C:ADP602 3.2 69.4 1.0 OD2 C:ASP92 3.4 79.4 1.0 O3A C:ADP602 3.4 67.9 1.0 NZ C:LYS166 3.7 57.0 1.0 F1 C:AF3603 4.1 72.4 1.0 O5' C:ADP602 4.2 73.9 1.0 O3B C:ADP602 4.3 77.6 1.0 CB C:ASP92 4.3 70.8 1.0 N C:GLY93 4.3 65.3 1.0 O2A C:ADP602 4.3 65.8 1.0 C5' C:ADP602 4.4 74.2 1.0 O C:ALA162 4.4 67.1 1.0 OG C:SER165 4.5 77.8 1.0 OD2 C:ASP391 4.7 79.0 1.0 AL C:AF3603 4.7 70.8 1.0 CA C:ASP92 4.8 66.6 1.0 CA C:ALA162 4.9 63.3 1.0

Magnesium binding site 3 out of 8 in the The Beta-Tubulin Folding Intermediate II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Beta-Tubulin Folding Intermediate II within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg601 b:66.3 occ:1.00 O1B D:ADP602 1.9 61.8 1.0 O1A D:ADP602 2.0 65.1 1.0 OD1 D:ASP104 2.6 58.1 1.0 PA D:ADP602 2.9 68.3 1.0 PB D:ADP602 3.0 54.0 1.0 O3A D:ADP602 3.0 59.7 1.0 O5' D:ADP602 3.4 59.8 1.0 F1 D:AF3603 3.5 54.5 1.0 CG D:ASP104 3.5 58.9 1.0 O3B D:ADP602 3.5 52.8 1.0 OD2 D:ASP104 3.8 63.2 1.0 AL D:AF3603 4.2 51.6 1.0 O D:THR172 4.2 57.2 1.0 O2B D:ADP602 4.3 49.2 1.0 O2A D:ADP602 4.4 58.1 1.0 CA D:THR172 4.4 56.2 1.0 CB D:THR172 4.6 51.9 1.0 C5' D:ADP602 4.7 58.2 1.0 NZ D:LYS176 4.8 58.1 1.0 CE D:LYS176 4.8 50.7 1.0 C D:THR172 4.8 52.1 1.0 CB D:ASP104 4.9 49.0 1.0 F3 D:AF3603 4.9 62.2 1.0 N D:GLY105 4.9 51.0 1.0 CB D:SER175 5.0 58.3 1.0

Magnesium binding site 4 out of 8 in the The Beta-Tubulin Folding Intermediate II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Beta-Tubulin Folding Intermediate II within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg601 b:48.3 occ:1.00 F1 E:AF3603 1.9 77.9 1.0 OD1 E:ASP97 2.0 85.2 1.0 O3A E:ADP602 2.1 81.4 1.0 CG E:ASP97 2.9 83.4 1.0 PB E:ADP602 3.0 82.9 1.0 O1B E:ADP602 3.1 73.0 1.0 OD2 E:ASP97 3.1 87.2 1.0 O3B E:ADP602 3.2 81.9 1.0 O1A E:ADP602 3.2 85.6 1.0 PA E:ADP602 3.2 89.1 1.0 AL E:AF3603 3.4 78.2 1.0 O5' E:ADP602 3.9 81.7 1.0 CG2 E:THR166 4.2 66.5 1.0 CB E:ASP97 4.3 71.4 1.0 O2B E:ADP602 4.3 80.0 1.0 F3 E:AF3603 4.3 67.6 1.0 N E:GLY98 4.4 64.7 1.0 O2A E:ADP602 4.5 74.6 1.0 F2 E:AF3603 4.5 79.2 1.0 O E:THR166 4.7 69.4 1.0 CA E:ASP97 4.8 69.5 1.0 C E:ASP97 5.0 74.5 1.0

Magnesium binding site 5 out of 8 in the The Beta-Tubulin Folding Intermediate II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of The Beta-Tubulin Folding Intermediate II within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg601 b:52.5 occ:1.00 F1 F:AF3603 2.0 70.9 1.0 OD1 F:ASP104 2.3 76.3 1.0 O3A F:ADP602 2.8 54.4 1.0 O3B F:ADP602 2.9 71.5 1.0 OD2 F:ASP104 3.0 75.0 1.0 CG F:ASP104 3.0 69.8 1.0 PB F:ADP602 3.2 67.3 1.0 O1B F:ADP602 3.2 57.3 1.0 AL F:AF3603 3.6 57.0 1.0 PA F:ADP602 3.9 72.6 1.0 O1A F:ADP602 4.1 70.5 1.0 O5' F:ADP602 4.1 72.2 1.0 CB F:SER170 4.3 67.4 1.0 N F:GLY105 4.3 60.9 1.0 CB F:ASP104 4.4 59.6 1.0 F3 F:AF3603 4.5 56.0 1.0 O2B F:ADP602 4.6 70.1 1.0 F2 F:AF3603 4.7 59.4 1.0 CA F:SER170 4.7 61.1 1.0 OD2 F:ASP407 4.8 66.3 1.0 CA F:ASP104 5.0 55.9 1.0 CA F:GLY105 5.0 57.0 1.0

Magnesium binding site 6 out of 8 in the The Beta-Tubulin Folding Intermediate II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of The Beta-Tubulin Folding Intermediate II within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg601 b:70.5 occ:1.00 OD1 G:ASP88 2.0 89.1 1.0 O1B G:ADP602 2.1 75.8 1.0 OD2 G:ASP88 2.1 79.8 1.0 CG G:ASP88 2.4 81.7 1.0 PB G:ADP602 3.5 72.1 1.0 F3 G:AF3603 3.7 68.1 1.0 CB G:ASP88 3.9 69.9 1.0 O1A G:ADP602 3.9 81.0 1.0 O2B G:ADP602 4.0 69.1 1.0 N G:GLY89 4.1 65.0 1.0 O3A G:ADP602 4.2 63.6 1.0 PA G:ADP602 4.5 81.9 1.0 O5' G:ADP602 4.5 73.2 1.0 CA G:SER155 4.6 66.6 1.0 O3B G:ADP602 4.6 64.5 1.0 CA G:ASP88 4.6 66.9 1.0 CB G:SER155 4.6 65.9 1.0 OE2 G:GLU505 4.8 83.0 1.0 O G:SER155 4.8 71.5 1.0 C G:ASP88 4.9 76.0 1.0 CA G:GLY89 4.9 61.8 1.0

Magnesium binding site 7 out of 8 in the The Beta-Tubulin Folding Intermediate II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of The Beta-Tubulin Folding Intermediate II within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg601 b:61.9 occ:1.00 F1 H:AF3603 1.9 64.2 1.0 O3A H:ADP602 2.1 65.9 1.0 OD1 H:ASP93 2.4 70.3 1.0 O1A H:ADP602 3.1 70.8 1.0 PB H:ADP602 3.1 49.7 1.0 CG H:ASP93 3.2 67.4 1.0 PA H:ADP602 3.2 70.7 1.0 O3B H:ADP602 3.3 49.3 1.0 OD2 H:ASP93 3.3 71.8 1.0 O1B H:ADP602 3.4 61.4 1.0 AL H:AF3603 3.5 61.5 1.0 O5' H:ADP602 4.2 62.3 1.0 C5' H:ADP602 4.2 62.9 1.0 OD1 H:ASP393 4.2 71.8 1.0 CE H:LYS163 4.3 54.2 1.0 O2A H:ADP602 4.3 57.6 1.0 O2B H:ADP602 4.4 55.6 1.0 F2 H:AF3603 4.4 73.2 1.0 N H:GLY94 4.5 47.3 1.0 O H:SER159 4.5 61.3 1.0 CB H:ASP93 4.6 56.0 1.0 F3 H:AF3603 4.7 51.7 1.0 NZ H:LYS163 4.8 65.2 1.0

Magnesium binding site 8 out of 8 in the The Beta-Tubulin Folding Intermediate II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of The Beta-Tubulin Folding Intermediate II within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg601 b:59.9 occ:1.00 F1 I:AF3603 2.2 75.7 1.0 OD2 I:ASP90 2.3 88.5 1.0 O3A I:ADP602 2.5 63.9 1.0 CG I:ASP90 3.1 85.1 1.0 OD1 I:ASP90 3.3 87.5 1.0 AL I:AF3603 3.3 80.4 1.0 PB I:ADP602 3.4 65.5 1.0 O1A I:ADP602 3.4 63.4 1.0 O1B I:ADP602 3.4 56.4 1.0 O3B I:ADP602 3.5 72.1 1.0 PA I:ADP602 3.5 66.0 1.0 OD2 I:ASP393 3.8 70.1 1.0 O5' I:ADP602 4.1 75.2 1.0 F2 I:AF3603 4.2 78.8 1.0 CE I:LYS159 4.2 65.7 1.0 OG1 I:THR158 4.4 79.4 1.0 CB I:ASP90 4.5 74.3 1.0 F3 I:AF3603 4.6 65.5 1.0 CG I:ASP393 4.7 72.8 1.0 O2B I:ADP602 4.7 72.0 1.0 OD1 I:ASP393 4.7 78.7 1.0 N I:GLY91 4.8 66.7 1.0 O2A I:ADP602 4.8 59.8 1.0 CB I:SER155 4.9 68.3 1.0 CA I:ASP90 5.0 73.7 1.0 CA I:SER155 5.0 71.7 1.0 NZ I:LYS159 5.0 69.3 1.0

D.Gestaut, Y.Zhao, J.Park, B.Ma, A.Leitner, M.Collier, G.Pintilie, S.H.Roh, W.Chiu, J.Frydman. Structural Visualization of the Tubulin Folding Pathway Directed By Human Chaperonin Tric/Cct. Cell V. 185 4770 2022.
ISSN: ISSN 1097-4172
PubMed: 36493755
DOI: 10.1016/J.CELL.2022.11.014