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Magnesium in PDB 7ttr: SKD3_ATPYS_FITC-Casein Hexamer, Aaa+ Only

Magnesium Binding Sites:

The binding sites of Magnesium atom in the SKD3_ATPYS_FITC-Casein Hexamer, Aaa+ Only (pdb code 7ttr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the SKD3_ATPYS_FITC-Casein Hexamer, Aaa+ Only, PDB code: 7ttr:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 7ttr

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Magnesium binding site 1 out of 4 in the SKD3_ATPYS_FITC-Casein Hexamer, Aaa+ Only


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of SKD3_ATPYS_FITC-Casein Hexamer, Aaa+ Only within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg801

b:110.1
occ:1.00
O2G B:AGS802 1.8 20.0 1.0
PG B:AGS802 2.8 20.0 1.0
O2B B:AGS802 2.9 20.0 1.0
O3B B:AGS802 2.9 20.0 1.0
PB B:AGS802 3.2 20.0 1.0
CG2 B:THR388 3.4 105.6 1.0
O1A B:AGS802 3.5 20.0 1.0
CB B:THR388 3.7 105.6 1.0
OD1 B:ASP454 3.8 120.8 1.0
O3A B:AGS802 3.9 20.0 1.0
O3G B:AGS802 3.9 20.0 1.0
S1G B:AGS802 4.0 20.0 1.0
OD2 B:ASP454 4.1 120.8 1.0
O1B B:AGS802 4.3 20.0 1.0
PA B:AGS802 4.3 20.0 1.0
NH1 B:ARG620 4.3 111.2 1.0
CG B:ASP454 4.4 120.8 1.0
OE2 B:GLU455 4.5 119.8 1.0
N B:THR388 4.5 105.6 1.0
OG1 B:THR388 4.6 105.6 1.0
CA B:THR388 4.7 105.6 1.0
CG B:GLU455 4.9 119.8 1.0

Magnesium binding site 2 out of 4 in 7ttr

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Magnesium binding site 2 out of 4 in the SKD3_ATPYS_FITC-Casein Hexamer, Aaa+ Only


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of SKD3_ATPYS_FITC-Casein Hexamer, Aaa+ Only within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg801

b:128.5
occ:1.00
O2G C:AGS802 2.2 20.0 1.0
O2B C:AGS802 2.4 20.0 1.0
CG2 C:THR388 2.8 129.4 1.0
OG1 C:THR388 3.1 129.4 1.0
OE2 C:GLU455 3.2 121.4 1.0
O1A C:AGS802 3.4 20.0 1.0
PG C:AGS802 3.5 20.0 1.0
CB C:THR388 3.5 129.4 1.0
OD2 C:ASP454 3.6 104.8 1.0
OD1 C:ASP454 3.6 104.8 1.0
PB C:AGS802 3.7 20.0 1.0
NH1 B:ARG561 3.9 112.0 1.0
O3G C:AGS802 3.9 20.0 1.0
O3B C:AGS802 4.0 20.0 1.0
CG C:ASP454 4.0 104.8 1.0
CD C:GLU455 4.5 121.4 1.0
N C:THR388 4.5 129.4 1.0
PA C:AGS802 4.5 20.0 1.0
O1B C:AGS802 4.5 20.0 1.0
O3A C:AGS802 4.6 20.0 1.0
CA C:THR388 4.6 129.4 1.0
OD2 B:ASP472 4.8 111.9 1.0
OG1 C:THR494 4.9 105.8 1.0

Magnesium binding site 3 out of 4 in 7ttr

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Magnesium binding site 3 out of 4 in the SKD3_ATPYS_FITC-Casein Hexamer, Aaa+ Only


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of SKD3_ATPYS_FITC-Casein Hexamer, Aaa+ Only within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg802

b:101.3
occ:1.00
O1B D:AGS801 1.9 20.0 1.0
O1A D:AGS801 2.0 20.0 1.0
OE2 D:GLU455 2.1 105.8 1.0
OG1 D:THR388 2.4 96.4 1.0
PB D:AGS801 2.9 20.0 1.0
O3B D:AGS801 3.1 20.0 1.0
PA D:AGS801 3.3 20.0 1.0
CD D:GLU455 3.3 105.8 1.0
OD1 D:ASP454 3.4 108.1 1.0
O3A D:AGS801 3.5 20.0 1.0
CB D:THR388 3.6 96.4 1.0
O2G D:AGS801 3.6 20.0 1.0
OD2 D:ASP454 3.9 108.1 1.0
O3G D:AGS801 3.9 20.0 1.0
PG D:AGS801 3.9 20.0 1.0
OE1 D:GLU455 4.0 105.8 1.0
CG D:ASP454 4.0 108.1 1.0
NH1 C:ARG561 4.1 101.6 1.0
O2B D:AGS801 4.2 20.0 1.0
O2A D:AGS801 4.2 20.0 1.0
O5' D:AGS801 4.3 20.0 1.0
N D:THR388 4.4 96.4 1.0
CG D:GLU455 4.5 105.8 1.0
CG2 D:THR388 4.5 96.4 1.0
OG1 D:THR494 4.5 101.6 1.0
CA D:THR388 4.6 96.4 1.0
C5' D:AGS801 4.6 20.0 1.0
NH1 D:ARG620 5.0 108.5 1.0
CB D:THR494 5.0 101.6 1.0
CE D:LYS387 5.0 105.1 1.0
NZ D:LYS387 5.0 105.1 1.0

Magnesium binding site 4 out of 4 in 7ttr

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Magnesium binding site 4 out of 4 in the SKD3_ATPYS_FITC-Casein Hexamer, Aaa+ Only


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of SKD3_ATPYS_FITC-Casein Hexamer, Aaa+ Only within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg802

b:121.1
occ:1.00
OG1 E:THR388 2.2 115.8 1.0
O2G E:AGS801 2.9 20.0 1.0
CB E:THR388 3.2 115.8 1.0
O1B E:AGS801 3.3 20.0 1.0
OD1 E:ASP454 3.5 120.8 1.0
OD2 E:ASP454 3.6 120.8 1.0
O2A E:AGS801 3.6 20.0 1.0
O3A E:AGS801 3.9 20.0 1.0
N E:THR388 3.9 115.8 1.0
CG E:ASP454 4.0 120.8 1.0
PB E:AGS801 4.1 20.0 1.0
CA E:THR388 4.1 115.8 1.0
PG E:AGS801 4.2 20.0 1.0
CG2 E:THR388 4.2 115.8 1.0
NH1 D:ARG561 4.2 112.0 1.0
PA E:AGS801 4.3 20.0 1.0
O3G E:AGS801 4.4 20.0 1.0
OE2 E:GLU455 4.5 125.5 1.0
O3B E:AGS801 4.6 20.0 1.0
OG1 E:THR494 4.8 125.6 1.0
NH1 E:ARG620 4.9 118.0 1.0
CB E:LYS387 5.0 129.9 1.0

Reference:

R.R.Cupo, A.N.Rizo, G.A.Braun, E.Tse, E.Chuang, K.Gupta, D.R.Southworth, J.Shorter. Unique Structural Features Govern the Activity of A Human Mitochondrial Aaa+ Disaggregase, SKD3. Cell Rep V. 40 11408 2022.
ISSN: ESSN 2211-1247
PubMed: 36170828
DOI: 10.1016/J.CELREP.2022.111408
Page generated: Thu Oct 3 09:27:08 2024

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