Magnesium in PDB 7tts: SKD3, Hexamer, Filtered

The binding sites of Magnesium atom in the SKD3, Hexamer, Filtered (pdb code 7tts). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the SKD3, Hexamer, Filtered, PDB code: 7tts:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the SKD3, Hexamer, Filtered


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of SKD3, Hexamer, Filtered within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg801 b:110.1 occ:1.00 O2G B:AGS802 1.8 20.0 1.0 PG B:AGS802 2.8 20.0 1.0 O2B B:AGS802 2.9 20.0 1.0 O3B B:AGS802 2.9 20.0 1.0 PB B:AGS802 3.2 20.0 1.0 CG2 B:THR388 3.4 105.6 1.0 O1A B:AGS802 3.5 20.0 1.0 CB B:THR388 3.7 105.6 1.0 OD1 B:ASP454 3.8 120.8 1.0 O3A B:AGS802 3.9 20.0 1.0 O3G B:AGS802 3.9 20.0 1.0 S1G B:AGS802 4.0 20.0 1.0 OD2 B:ASP454 4.1 120.8 1.0 O1B B:AGS802 4.3 20.0 1.0 PA B:AGS802 4.3 20.0 1.0 NH1 B:ARG620 4.3 111.2 1.0 CG B:ASP454 4.4 120.8 1.0 OE2 B:GLU455 4.5 119.8 1.0 N B:THR388 4.5 105.6 1.0 OG1 B:THR388 4.6 105.6 1.0 CA B:THR388 4.7 105.6 1.0 CG B:GLU455 4.9 119.8 1.0

Magnesium binding site 2 out of 4 in the SKD3, Hexamer, Filtered


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of SKD3, Hexamer, Filtered within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg801 b:128.5 occ:1.00 O2G C:AGS802 2.2 20.0 1.0 O2B C:AGS802 2.4 20.0 1.0 CG2 C:THR388 2.8 129.4 1.0 OG1 C:THR388 3.1 129.4 1.0 OE2 C:GLU455 3.2 121.4 1.0 O1A C:AGS802 3.4 20.0 1.0 PG C:AGS802 3.5 20.0 1.0 CB C:THR388 3.5 129.4 1.0 OD2 C:ASP454 3.6 104.8 1.0 OD1 C:ASP454 3.6 104.8 1.0 PB C:AGS802 3.7 20.0 1.0 NH1 B:ARG561 3.9 112.0 1.0 O3G C:AGS802 3.9 20.0 1.0 O3B C:AGS802 4.0 20.0 1.0 CG C:ASP454 4.0 104.8 1.0 CD C:GLU455 4.5 121.4 1.0 N C:THR388 4.5 129.4 1.0 PA C:AGS802 4.5 20.0 1.0 O1B C:AGS802 4.5 20.0 1.0 O3A C:AGS802 4.6 20.0 1.0 CA C:THR388 4.6 129.4 1.0 OD2 B:ASP472 4.8 111.9 1.0 OG1 C:THR494 4.9 105.8 1.0

Magnesium binding site 3 out of 4 in the SKD3, Hexamer, Filtered


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of SKD3, Hexamer, Filtered within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg802 b:101.3 occ:1.00 O1B D:AGS801 1.9 20.0 1.0 O1A D:AGS801 2.0 20.0 1.0 OE2 D:GLU455 2.1 105.8 1.0 OG1 D:THR388 2.4 96.4 1.0 PB D:AGS801 2.9 20.0 1.0 O3B D:AGS801 3.1 20.0 1.0 PA D:AGS801 3.3 20.0 1.0 CD D:GLU455 3.3 105.8 1.0 OD1 D:ASP454 3.4 108.1 1.0 O3A D:AGS801 3.5 20.0 1.0 CB D:THR388 3.6 96.4 1.0 O2G D:AGS801 3.6 20.0 1.0 OD2 D:ASP454 3.9 108.1 1.0 O3G D:AGS801 3.9 20.0 1.0 PG D:AGS801 3.9 20.0 1.0 OE1 D:GLU455 4.0 105.8 1.0 CG D:ASP454 4.0 108.1 1.0 NH1 C:ARG561 4.1 101.6 1.0 O2B D:AGS801 4.2 20.0 1.0 O2A D:AGS801 4.2 20.0 1.0 O5' D:AGS801 4.3 20.0 1.0 N D:THR388 4.4 96.4 1.0 CG D:GLU455 4.5 105.8 1.0 CG2 D:THR388 4.5 96.4 1.0 OG1 D:THR494 4.5 101.6 1.0 CA D:THR388 4.6 96.4 1.0 C5' D:AGS801 4.6 20.0 1.0 NH1 D:ARG620 5.0 108.5 1.0 CB D:THR494 5.0 101.6 1.0 CE D:LYS387 5.0 105.1 1.0 NZ D:LYS387 5.0 105.1 1.0

Magnesium binding site 4 out of 4 in the SKD3, Hexamer, Filtered


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of SKD3, Hexamer, Filtered within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg802 b:121.1 occ:1.00 OG1 E:THR388 2.2 115.8 1.0 O2G E:AGS801 2.9 20.0 1.0 CB E:THR388 3.2 115.8 1.0 O1B E:AGS801 3.3 20.0 1.0 OD1 E:ASP454 3.5 120.8 1.0 OD2 E:ASP454 3.6 120.8 1.0 O2A E:AGS801 3.6 20.0 1.0 O3A E:AGS801 3.9 20.0 1.0 N E:THR388 3.9 115.8 1.0 CG E:ASP454 4.0 120.8 1.0 PB E:AGS801 4.1 20.0 1.0 CA E:THR388 4.1 115.8 1.0 PG E:AGS801 4.2 20.0 1.0 CG2 E:THR388 4.2 115.8 1.0 NH1 D:ARG561 4.2 112.0 1.0 PA E:AGS801 4.3 20.0 1.0 O3G E:AGS801 4.4 20.0 1.0 OE2 E:GLU455 4.5 125.5 1.0 O3B E:AGS801 4.6 20.0 1.0 OG1 E:THR494 4.8 125.6 1.0 NH1 E:ARG620 4.9 118.0 1.0 CB E:LYS387 5.0 129.9 1.0

R.R.Cupo, A.N.Rizo, G.A.Braun, E.Tse, E.Chuang, K.Gupta, D.R.Southworth, J.Shorter. Unique Structural Features Govern the Activity of A Human Mitochondrial Aaa+ Disaggregase, SKD3. Cell Rep V. 40 11408 2022.
ISSN: ESSN 2211-1247
PubMed: 36170828
DOI: 10.1016/J.CELREP.2022.111408