Magnesium in PDB 7ttt: The Beta-Tubulin Folding Intermediate III

The structure of The Beta-Tubulin Folding Intermediate III also contains other interesting chemical elements:

Aluminium	(Al)	8 atoms
Fluorine	(F)	24 atoms

The binding sites of Magnesium atom in the The Beta-Tubulin Folding Intermediate III (pdb code 7ttt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the The Beta-Tubulin Folding Intermediate III, PDB code: 7ttt:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in the The Beta-Tubulin Folding Intermediate III


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Beta-Tubulin Folding Intermediate III within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:91.5 occ:1.00 O1A B:ADP602 1.9 78.6 1.0 O1B B:ADP602 1.9 74.7 1.0 O3B B:ADP602 2.0 66.8 1.0 PB B:ADP602 2.3 77.1 1.0 OD1 B:ASP99 2.6 80.9 1.0 PA B:ADP602 3.0 66.8 1.0 O3A B:ADP602 3.0 74.0 1.0 CG B:ASP99 3.5 82.5 1.0 NZ B:LYS171 3.6 80.2 1.0 O2B B:ADP602 3.7 81.0 1.0 AL B:AF3603 3.7 77.2 1.0 OD2 B:ASP99 3.7 82.5 1.0 O5' B:ADP602 3.9 71.7 1.0 F1 B:AF3603 4.0 83.7 1.0 N B:GLY100 4.1 69.4 1.0 F2 B:AF3603 4.1 89.2 1.0 O2A B:ADP602 4.2 74.4 1.0 C5' B:ADP602 4.2 74.9 1.0 OG B:SER170 4.3 69.0 1.0 F3 B:AF3603 4.5 71.5 1.0 CA B:GLY100 4.5 64.1 1.0 CB B:ASP99 4.8 77.6 1.0 C B:ASP99 4.9 73.7 1.0

Magnesium binding site 2 out of 8 in the The Beta-Tubulin Folding Intermediate III


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Beta-Tubulin Folding Intermediate III within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:85.5 occ:1.00 O1A C:ADP602 2.0 75.6 1.0 O1B C:ADP602 2.0 70.3 1.0 O3B C:ADP602 2.3 75.8 1.0 OD1 C:ASP92 2.4 89.4 1.0 PB C:ADP602 2.5 71.8 1.0 PA C:ADP602 3.0 69.0 1.0 O3A C:ADP602 3.2 68.4 1.0 CG C:ASP92 3.3 86.3 1.0 OD2 C:ASP92 3.5 85.8 1.0 AL C:AF3603 3.9 70.7 1.0 O2B C:ADP602 3.9 73.9 1.0 O2A C:ADP602 4.0 80.1 1.0 N C:GLY93 4.0 66.4 1.0 F1 C:AF3603 4.1 71.9 1.0 O5' C:ADP602 4.2 70.7 1.0 F2 C:AF3603 4.3 81.2 1.0 C5' C:ADP602 4.3 69.7 1.0 NZ C:LYS166 4.4 66.7 1.0 CA C:GLY93 4.6 64.7 1.0 F3 C:AF3603 4.6 67.2 1.0 CB C:ASP92 4.7 73.8 1.0 OG C:SER165 4.9 76.7 1.0 C C:ASP92 4.9 73.1 1.0 CA C:ASP92 5.0 65.5 1.0

Magnesium binding site 3 out of 8 in the The Beta-Tubulin Folding Intermediate III


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Beta-Tubulin Folding Intermediate III within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg601 b:82.2 occ:1.00 F1 D:AF3603 2.0 87.7 1.0 O1B D:ADP602 2.0 92.3 1.0 OD2 D:ASP104 2.0 91.3 1.0 O1A D:ADP602 2.7 86.4 1.0 CG D:ASP104 3.0 91.1 1.0 PB D:ADP602 3.1 85.5 1.0 O3A D:ADP602 3.3 85.8 1.0 AL D:AF3603 3.5 87.5 1.0 OD1 D:ASP104 3.5 97.3 1.0 O3B D:ADP602 3.5 79.3 1.0 PA D:ADP602 3.6 85.9 1.0 CB D:ASP104 4.3 78.0 1.0 O D:THR172 4.3 76.5 1.0 F3 D:AF3603 4.4 77.7 1.0 O2B D:ADP602 4.4 80.1 1.0 N D:GLY105 4.4 78.1 1.0 C5' D:ADP602 4.5 85.4 1.0 NZ D:LYS176 4.5 86.1 1.0 O5' D:ADP602 4.5 79.0 1.0 F2 D:AF3603 4.6 87.5 1.0 CG2 D:THR172 4.7 74.1 1.0 O2A D:ADP602 4.8 87.1 1.0 CA D:ASP104 4.9 76.1 1.0

Magnesium binding site 4 out of 8 in the The Beta-Tubulin Folding Intermediate III


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Beta-Tubulin Folding Intermediate III within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg601 b:55.8 occ:1.00 O1B E:ADP602 2.0 69.4 1.0 O1A E:ADP602 2.1 71.0 1.0 O3A E:ADP602 2.7 70.1 1.0 PB E:ADP602 2.8 66.2 1.0 PA E:ADP602 3.0 71.5 1.0 F1 E:AF3603 3.0 68.3 1.0 O3B E:ADP602 3.2 67.5 1.0 OD2 E:ASP97 3.4 81.8 1.0 O5' E:ADP602 3.8 57.2 1.0 OD1 E:ASP97 3.8 81.8 1.0 CG E:ASP97 3.9 79.1 1.0 C5' E:ADP602 4.0 64.2 1.0 AL E:AF3603 4.1 63.8 1.0 OG E:SER169 4.1 72.8 1.0 O2B E:ADP602 4.2 56.4 1.0 O2A E:ADP602 4.3 69.2 1.0 NZ E:LYS170 4.4 60.4 1.0 O E:THR166 4.7 60.9 1.0 N E:GLY98 4.8 57.0 1.0 F2 E:AF3603 4.8 77.2 1.0

Magnesium binding site 5 out of 8 in the The Beta-Tubulin Folding Intermediate III


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of The Beta-Tubulin Folding Intermediate III within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg601 b:87.8 occ:1.00 O1A F:ADP602 2.0 79.6 1.0 O1B F:ADP602 2.3 66.7 1.0 OD1 F:ASP104 2.4 84.5 1.0 O3B F:ADP602 2.5 68.5 1.0 PB F:ADP602 2.8 65.5 1.0 F2 F:AF3603 3.0 81.8 1.0 PA F:ADP602 3.2 78.1 1.0 CG F:ASP104 3.3 78.5 1.0 O3A F:ADP602 3.5 69.9 1.0 OD2 F:ASP104 3.6 77.1 1.0 AL F:AF3603 4.0 70.4 1.0 O5' F:ADP602 4.0 68.8 1.0 N F:GLY105 4.2 70.2 1.0 O2B F:ADP602 4.2 68.3 1.0 F1 F:AF3603 4.3 76.3 1.0 O2A F:ADP602 4.5 77.0 1.0 CB F:ASP104 4.6 71.4 1.0 C5' F:ADP602 4.6 68.3 1.0 OD2 F:ASP407 4.8 71.1 1.0 CA F:ASP104 4.8 71.2 1.0 O F:SER170 4.9 74.3 1.0 CA F:GLY105 5.0 64.9 1.0

Magnesium binding site 6 out of 8 in the The Beta-Tubulin Folding Intermediate III


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of The Beta-Tubulin Folding Intermediate III within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg601 b:83.1 occ:1.00 F1 G:AF3603 1.9 78.7 1.0 O1A G:ADP602 2.0 81.7 1.0 O1B G:ADP602 2.0 74.4 1.0 OD1 G:ASP88 2.7 79.8 1.0 PB G:ADP602 2.8 76.8 1.0 O3B G:ADP602 3.0 73.8 1.0 PA G:ADP602 3.0 84.7 1.0 O3A G:ADP602 3.0 77.7 1.0 AL G:AF3603 3.5 75.4 1.0 CG G:ASP88 3.6 76.9 1.0 OD2 G:ASP88 3.9 78.3 1.0 O5' G:ADP602 4.1 65.8 1.0 C5' G:ADP602 4.1 70.1 1.0 O2A G:ADP602 4.2 77.5 1.0 O2B G:ADP602 4.2 71.1 1.0 N G:GLY89 4.2 72.2 1.0 F3 G:AF3603 4.4 65.0 1.0 NZ G:LYS159 4.4 65.5 1.0 F2 G:AF3603 4.7 84.1 1.0 CA G:GLY89 4.8 65.3 1.0 O G:SER155 4.9 65.2 1.0 CB G:ASP88 5.0 71.3 1.0

Magnesium binding site 7 out of 8 in the The Beta-Tubulin Folding Intermediate III


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of The Beta-Tubulin Folding Intermediate III within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg601 b:65.7 occ:1.00 O1B H:ADP602 2.0 70.4 1.0 O1A H:ADP602 2.4 74.4 1.0 OD1 H:ASP93 2.7 84.6 1.0 PB H:ADP602 3.1 65.0 1.0 O3A H:ADP602 3.2 69.9 1.0 PA H:ADP602 3.4 74.5 1.0 CG H:ASP93 3.5 78.2 1.0 OD2 H:ASP93 3.6 82.1 1.0 O3B H:ADP602 3.6 68.1 1.0 C5' H:ADP602 4.0 71.4 1.0 O5' H:ADP602 4.1 71.9 1.0 F1 H:AF3603 4.2 72.0 1.0 AL H:AF3603 4.3 63.5 1.0 O2B H:ADP602 4.4 65.1 1.0 F2 H:AF3603 4.5 79.1 1.0 O H:SER159 4.5 71.4 1.0 CE H:LYS163 4.5 74.7 1.0 O2A H:ADP602 4.7 78.8 1.0 N H:GLY94 4.7 73.0 1.0

Magnesium binding site 8 out of 8 in the The Beta-Tubulin Folding Intermediate III


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of The Beta-Tubulin Folding Intermediate III within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg601 b:70.6 occ:1.00 OD1 I:ASP90 2.1 93.0 1.0 O1B I:ADP602 2.4 70.1 1.0 O1A I:ADP602 2.6 76.0 1.0 OD2 I:ASP90 2.7 91.5 1.0 CG I:ASP90 2.8 87.1 1.0 PB I:ADP602 3.5 64.7 1.0 O3B I:ADP602 3.8 53.4 1.0 PA I:ADP602 3.8 78.1 1.0 OG1 I:THR158 3.9 75.8 1.0 O3A I:ADP602 4.0 67.5 1.0 CB I:ASP90 4.2 78.3 1.0 F2 I:AF3603 4.3 83.5 1.0 AL I:AF3603 4.4 71.3 1.0 OG I:SER155 4.5 81.9 1.0 OD2 I:ASP393 4.6 82.9 1.0 F1 I:AF3603 4.6 74.3 1.0 C5' I:ADP602 4.6 72.3 1.0 O I:SER155 4.6 82.9 1.0 O5' I:ADP602 4.7 68.9 1.0 N I:GLY91 4.8 68.6 1.0 CA I:ASP90 4.8 77.7 1.0 O2B I:ADP602 4.9 71.9 1.0 CB I:THR158 5.0 73.6 1.0 O2A I:ADP602 5.0 73.1 1.0

D.Gestaut, Y.Zhao, J.Park, B.Ma, A.Leitner, M.Collier, G.Pintilie, S.H.Roh, W.Chiu, J.Frydman. Structural Visualization of the Tubulin Folding Pathway Directed By Human Chaperonin Tric/Cct. Cell V. 185 4770 2022.
ISSN: ISSN 1097-4172
PubMed: 36493755
DOI: 10.1016/J.CELL.2022.11.014