Magnesium in PDB 7u22: Mycobacterium Tuberculosis Rna Polymerase Sigma A Holoenzyme Open Promoter Complex Containing Umn-7

Enzymatic activity of Mycobacterium Tuberculosis Rna Polymerase Sigma A Holoenzyme Open Promoter Complex Containing Umn-7

All present enzymatic activity of Mycobacterium Tuberculosis Rna Polymerase Sigma A Holoenzyme Open Promoter Complex Containing Umn-7:
2.7.7.6;

Protein crystallography data

The structure of Mycobacterium Tuberculosis Rna Polymerase Sigma A Holoenzyme Open Promoter Complex Containing Umn-7, PDB code: 7u22 was solved by V.Molodtsov, R.H.Ebright, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.30 / 3.87
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 149.482, 161.445, 196.603, 90, 90, 90
R / Rfree (%) 24 / 27.8

Other elements in 7u22:

The structure of Mycobacterium Tuberculosis Rna Polymerase Sigma A Holoenzyme Open Promoter Complex Containing Umn-7 also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Mycobacterium Tuberculosis Rna Polymerase Sigma A Holoenzyme Open Promoter Complex Containing Umn-7 (pdb code 7u22). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Mycobacterium Tuberculosis Rna Polymerase Sigma A Holoenzyme Open Promoter Complex Containing Umn-7, PDB code: 7u22:

Magnesium binding site 1 out of 1 in 7u22

Go back to Magnesium Binding Sites List in 7u22
Magnesium binding site 1 out of 1 in the Mycobacterium Tuberculosis Rna Polymerase Sigma A Holoenzyme Open Promoter Complex Containing Umn-7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Mycobacterium Tuberculosis Rna Polymerase Sigma A Holoenzyme Open Promoter Complex Containing Umn-7 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1403

b:143.7
occ:0.00
OD1 D:ASP537 2.4 131.8 1.0
OD1 D:ASP539 2.5 136.1 1.0
OD1 D:ASP535 2.6 126.6 1.0
CG D:ASP537 3.2 154.1 1.0
CG D:ASP539 3.3 144.0 1.0
OD2 D:ASP537 3.3 122.7 1.0
OD2 D:ASP539 3.4 155.1 1.0
CG D:ASP535 3.4 171.4 1.0
OD2 D:ASP535 3.5 193.0 1.0
NH2 D:ARG500 4.3 143.0 1.0
CB D:ASP537 4.7 146.7 1.0
CB D:ASP539 4.7 129.3 1.0
CB D:ASP535 4.9 153.2 1.0

Reference:

T.Lan, U.S.Ganapathy, S.Sharma, Y.M.Ahn, M.Zimmerman, V.Molodtsov, P.Hegde, M.Gengenbacher, R.H.Ebright, V.Dartois, J.S.Freundlich, T.Dick, C.C.Aldrich. Redesign of Rifamycin Antibiotics to Overcome Adp-Ribosylation-Mediated Resistance. Angew.Chem.Int.Ed.Engl. V. 61 11498 2022.
ISSN: ESSN 1521-3773
PubMed: 36222275
DOI: 10.1002/ANIE.202211498
Page generated: Thu Apr 6 23:33:45 2023

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