Magnesium in PDB 7udt: Cryo-Em Structure of the Rigor State Wild Type Myosin-15-F-Actin Complex (Symmetry Expansion and Re-Centering)

The binding sites of Magnesium atom in the Cryo-Em Structure of the Rigor State Wild Type Myosin-15-F-Actin Complex (Symmetry Expansion and Re-Centering) (pdb code 7udt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Cryo-Em Structure of the Rigor State Wild Type Myosin-15-F-Actin Complex (Symmetry Expansion and Re-Centering), PDB code: 7udt:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Cryo-Em Structure of the Rigor State Wild Type Myosin-15-F-Actin Complex (Symmetry Expansion and Re-Centering)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Rigor State Wild Type Myosin-15-F-Actin Complex (Symmetry Expansion and Re-Centering) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:91.3 occ:1.00 O2B A:ADP401 2.2 98.2 1.0 PB A:ADP401 3.6 98.2 1.0 O3B A:ADP401 3.9 98.2 1.0 O2A A:ADP401 4.0 98.2 1.0 OE1 A:GLN137 4.1 102.7 1.0 OD2 A:ASP154 4.1 101.6 1.0 NZ A:LYS18 4.1 93.1 1.0 CD A:GLN137 4.4 102.7 1.0 O3A A:ADP401 4.4 98.2 1.0 NE2 A:GLN137 4.4 102.7 1.0 OD2 A:ASP11 4.4 101.5 1.0 OD1 A:ASP11 4.4 101.5 1.0 CA A:GLY156 4.5 95.7 1.0 O1B A:ADP401 4.7 98.2 1.0 PA A:ADP401 4.7 98.2 1.0 OD1 A:ASP154 4.7 101.6 1.0 CG A:ASP154 4.9 101.6 1.0 CG A:ASP11 4.9 101.5 1.0 N A:GLY156 4.9 95.7 1.0 CA A:GLY13 4.9 96.1 1.0 CG2 A:VAL339 4.9 95.9 1.0 CE A:LYS18 5.0 93.1 1.0

Magnesium binding site 2 out of 3 in the Cryo-Em Structure of the Rigor State Wild Type Myosin-15-F-Actin Complex (Symmetry Expansion and Re-Centering)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Rigor State Wild Type Myosin-15-F-Actin Complex (Symmetry Expansion and Re-Centering) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:71.0 occ:1.00 O2B B:ADP401 2.2 93.9 1.0 PB B:ADP401 3.6 93.9 1.0 O3B B:ADP401 3.9 93.9 1.0 O2A B:ADP401 4.0 93.9 1.0 OE1 B:GLN137 4.1 91.8 1.0 OD2 B:ASP154 4.1 89.9 1.0 NZ B:LYS18 4.1 90.1 1.0 CD B:GLN137 4.4 91.8 1.0 O3A B:ADP401 4.4 93.9 1.0 NE2 B:GLN137 4.4 91.8 1.0 OD2 B:ASP11 4.4 97.1 1.0 OD1 B:ASP11 4.4 97.1 1.0 CA B:GLY156 4.5 89.3 1.0 O1B B:ADP401 4.7 93.9 1.0 PA B:ADP401 4.7 93.9 1.0 OD1 B:ASP154 4.7 89.9 1.0 CG B:ASP154 4.9 89.9 1.0 CG B:ASP11 4.9 97.1 1.0 N B:GLY156 4.9 89.3 1.0 CA B:GLY13 4.9 96.0 1.0 CG2 B:VAL339 4.9 83.8 1.0 CE B:LYS18 5.0 90.1 1.0

Magnesium binding site 3 out of 3 in the Cryo-Em Structure of the Rigor State Wild Type Myosin-15-F-Actin Complex (Symmetry Expansion and Re-Centering)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of the Rigor State Wild Type Myosin-15-F-Actin Complex (Symmetry Expansion and Re-Centering) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:95.0 occ:1.00 O2B C:ADP401 2.2 104.5 1.0 PB C:ADP401 3.6 104.5 1.0 O3B C:ADP401 3.9 104.5 1.0 O2A C:ADP401 4.0 104.5 1.0 OE1 C:GLN137 4.1 104.5 1.0 OD2 C:ASP154 4.1 95.6 1.0 NZ C:LYS18 4.1 107.5 1.0 CD C:GLN137 4.4 104.5 1.0 O3A C:ADP401 4.4 104.5 1.0 NE2 C:GLN137 4.4 104.5 1.0 OD2 C:ASP11 4.4 114.8 1.0 OD1 C:ASP11 4.4 114.8 1.0 CA C:GLY156 4.5 95.8 1.0 O1B C:ADP401 4.7 104.5 1.0 PA C:ADP401 4.7 104.5 1.0 OD1 C:ASP154 4.7 95.6 1.0 CG C:ASP154 4.9 95.6 1.0 CG C:ASP11 4.9 114.8 1.0 N C:GLY156 4.9 95.8 1.0 CA C:GLY13 4.9 106.6 1.0 CG2 C:VAL339 4.9 104.3 1.0 CE C:LYS18 5.0 107.5 1.0

R.Gong, F.Jiang, Z.G.Moreland, M.J.Reynolds, S.E.De Los Reyes, P.Gurel, A.Shams, J.B.Heidings, M.R.Bowl, J.E.Bird, G.M.Alushin. Structural Basis For Tunable Control of Actin Dynamics By Myosin-15 in Mechanosensory Stereocilia. Sci Adv V. 8 L4733 2022.
ISSN: ESSN 2375-2548
PubMed: 35857845
DOI: 10.1126/SCIADV.ABL4733