Magnesium in PDB 7udu: Cryo-Em Structure of the Adp State Wild Type Myosin-15-F-Actin Complex (Symmetry Expansion and Re-Centering)

The binding sites of Magnesium atom in the Cryo-Em Structure of the Adp State Wild Type Myosin-15-F-Actin Complex (Symmetry Expansion and Re-Centering) (pdb code 7udu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Cryo-Em Structure of the Adp State Wild Type Myosin-15-F-Actin Complex (Symmetry Expansion and Re-Centering), PDB code: 7udu:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Cryo-Em Structure of the Adp State Wild Type Myosin-15-F-Actin Complex (Symmetry Expansion and Re-Centering)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Adp State Wild Type Myosin-15-F-Actin Complex (Symmetry Expansion and Re-Centering) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:200.2 occ:1.00 O3B A:ADP401 2.2 208.6 1.0 PB A:ADP401 3.6 208.6 1.0 O2A A:ADP401 3.7 208.6 1.0 O2B A:ADP401 4.0 208.6 1.0 OD2 A:ASP154 4.1 225.8 1.0 NE2 A:GLN137 4.2 222.1 1.0 OD1 A:ASP154 4.4 225.8 1.0 CA A:GLY156 4.4 219.3 1.0 CA A:GLY301 4.4 218.0 1.0 OD2 A:ASP11 4.5 247.6 1.0 O3A A:ADP401 4.5 208.6 1.0 O1B A:ADP401 4.6 208.6 1.0 PA A:ADP401 4.6 208.6 1.0 NZ A:LYS18 4.6 208.3 1.0 CG A:ASP154 4.7 225.8 1.0 CG2 A:VAL339 4.8 201.0 1.0 CD A:GLN137 4.8 222.1 1.0 N A:GLY156 4.8 219.3 1.0

Magnesium binding site 2 out of 4 in the Cryo-Em Structure of the Adp State Wild Type Myosin-15-F-Actin Complex (Symmetry Expansion and Re-Centering)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Adp State Wild Type Myosin-15-F-Actin Complex (Symmetry Expansion and Re-Centering) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:190.7 occ:1.00 O3B B:ADP401 2.2 226.6 1.0 PB B:ADP401 3.6 226.6 1.0 O2A B:ADP401 3.7 226.6 1.0 O2B B:ADP401 4.0 226.6 1.0 OD2 B:ASP154 4.1 203.1 1.0 NE2 B:GLN137 4.2 189.9 1.0 OD1 B:ASP154 4.4 203.1 1.0 CA B:GLY156 4.4 207.2 1.0 CA B:GLY301 4.4 225.9 1.0 OD2 B:ASP11 4.5 225.6 1.0 O3A B:ADP401 4.5 226.6 1.0 O1B B:ADP401 4.6 226.6 1.0 PA B:ADP401 4.6 226.6 1.0 NZ B:LYS18 4.6 200.9 1.0 CG B:ASP154 4.7 203.1 1.0 CG2 B:VAL339 4.8 192.2 1.0 CD B:GLN137 4.8 189.9 1.0 N B:GLY156 4.8 207.2 1.0

Magnesium binding site 3 out of 4 in the Cryo-Em Structure of the Adp State Wild Type Myosin-15-F-Actin Complex (Symmetry Expansion and Re-Centering)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of the Adp State Wild Type Myosin-15-F-Actin Complex (Symmetry Expansion and Re-Centering) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:205.3 occ:1.00 O3B C:ADP401 2.2 215.8 1.0 PB C:ADP401 3.6 215.8 1.0 O2A C:ADP401 3.7 215.8 1.0 O2B C:ADP401 4.0 215.8 1.0 OD2 C:ASP154 4.1 208.9 1.0 NE2 C:GLN137 4.2 212.3 1.0 OD1 C:ASP154 4.4 208.9 1.0 CA C:GLY156 4.4 207.1 1.0 CA C:GLY301 4.4 221.4 1.0 OD2 C:ASP11 4.5 239.3 1.0 O3A C:ADP401 4.5 215.8 1.0 O1B C:ADP401 4.6 215.8 1.0 NZ C:LYS18 4.6 221.0 1.0 PA C:ADP401 4.6 215.8 1.0 CG C:ASP154 4.7 208.9 1.0 CG2 C:VAL339 4.8 198.9 1.0 CD C:GLN137 4.8 212.3 1.0 N C:GLY156 4.8 207.1 1.0

Magnesium binding site 4 out of 4 in the Cryo-Em Structure of the Adp State Wild Type Myosin-15-F-Actin Complex (Symmetry Expansion and Re-Centering)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of the Adp State Wild Type Myosin-15-F-Actin Complex (Symmetry Expansion and Re-Centering) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg2002 b:198.0 occ:1.00 O1B D:ADP2001 2.4 219.7 1.0 NZ D:LYS1305 2.5 194.3 1.0 CE D:LYS1305 2.9 194.3 1.0 OG1 D:THR1306 3.0 196.8 1.0 PB D:ADP2001 3.3 219.7 1.0 O2B D:ADP2001 3.5 219.7 1.0 CG D:LYS1305 3.9 194.3 1.0 CD D:LYS1305 4.0 194.3 1.0 O3B D:ADP2001 4.0 219.7 1.0 CB D:SER1353 4.2 219.2 1.0 OD2 D:ASP1572 4.3 221.7 1.0 CB D:THR1306 4.4 196.8 1.0 ND2 D:ASN1351 4.5 231.6 1.0 OE2 D:GLU1339 4.6 239.1 1.0 O3A D:ADP2001 4.7 219.7 1.0 N D:SER1353 4.8 219.2 1.0 N D:THR1306 4.8 196.8 1.0 ND2 D:ASN1343 4.8 224.2 1.0 OD1 D:ASN1343 4.9 224.2 1.0 CA D:SER1353 5.0 219.2 1.0

R.Gong, F.Jiang, Z.G.Moreland, M.J.Reynolds, S.E.De Los Reyes, P.Gurel, A.Shams, J.B.Heidings, M.R.Bowl, J.E.Bird, G.M.Alushin. Structural Basis For Tunable Control of Actin Dynamics By Myosin-15 in Mechanosensory Stereocilia. Sci Adv V. 8 L4733 2022.
ISSN: ESSN 2375-2548
PubMed: 35857845
DOI: 10.1126/SCIADV.ABL4733