Magnesium in PDB 7uob: Sars-Cov-2 Replication-Transcription Complex Bound to Gtp, in A Pre- Catalytic State

Enzymatic activity of Sars-Cov-2 Replication-Transcription Complex Bound to Gtp, in A Pre- Catalytic State

All present enzymatic activity of Sars-Cov-2 Replication-Transcription Complex Bound to Gtp, in A Pre- Catalytic State:
2.7.7.48;

Other elements in 7uob:

The structure of Sars-Cov-2 Replication-Transcription Complex Bound to Gtp, in A Pre- Catalytic State also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Sars-Cov-2 Replication-Transcription Complex Bound to Gtp, in A Pre- Catalytic State (pdb code 7uob). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Sars-Cov-2 Replication-Transcription Complex Bound to Gtp, in A Pre- Catalytic State, PDB code: 7uob:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 7uob

Go back to Magnesium Binding Sites List in 7uob
Magnesium binding site 1 out of 3 in the Sars-Cov-2 Replication-Transcription Complex Bound to Gtp, in A Pre- Catalytic State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Sars-Cov-2 Replication-Transcription Complex Bound to Gtp, in A Pre- Catalytic State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1003

b:11.2
occ:1.00
OD1 A:ASP618 2.5 9.0 1.0
O P:HOH210 2.7 11.2 1.0
OD2 A:ASP761 2.8 6.2 1.0
OD1 A:ASP760 2.8 6.6 1.0
O1A A:GTP1006 3.0 7.8 1.0
C3' P:L2B101 3.2 13.7 1.0
CG A:ASP618 3.4 9.0 1.0
OD2 A:ASP618 3.5 9.0 1.0
CG A:ASP760 3.6 6.6 1.0
C5' P:L2B101 3.7 13.7 1.0
OD2 A:ASP760 3.7 6.6 1.0
CG A:ASP761 3.8 6.2 1.0
C4' P:L2B101 3.8 13.7 1.0
O5' P:L2B101 3.9 13.7 1.0
PA A:GTP1006 4.1 7.8 1.0
MG A:MG1004 4.3 4.5 1.0
OD1 A:ASP761 4.4 6.2 1.0
O5' A:GTP1006 4.4 7.8 1.0
C5' A:GTP1006 4.5 7.8 1.0
O A:HOH1285 4.5 12.6 1.0
O2A A:GTP1006 4.5 7.8 1.0
O A:HOH1122 4.5 8.0 1.0
C2' P:L2B101 4.6 13.7 1.0
CB A:ASP761 4.6 6.2 1.0
O A:ASP760 4.7 6.6 1.0
C A:ASP760 4.8 6.6 1.0
CB A:ASP618 4.8 9.0 1.0
OP1 P:L2B101 4.8 13.7 1.0
N A:ASP761 4.9 6.2 1.0
O2' P:L2B101 5.0 13.7 1.0

Magnesium binding site 2 out of 3 in 7uob

Go back to Magnesium Binding Sites List in 7uob
Magnesium binding site 2 out of 3 in the Sars-Cov-2 Replication-Transcription Complex Bound to Gtp, in A Pre- Catalytic State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Sars-Cov-2 Replication-Transcription Complex Bound to Gtp, in A Pre- Catalytic State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1004

b:4.5
occ:1.00
O1A A:GTP1006 2.2 7.8 1.0
O2G A:GTP1006 2.2 7.8 1.0
O2B A:GTP1006 2.2 7.8 1.0
O A:TYR619 2.3 7.4 1.0
OD2 A:ASP760 2.6 6.6 1.0
OD2 A:ASP618 2.9 9.0 1.0
PA A:GTP1006 3.3 7.8 1.0
PB A:GTP1006 3.3 7.8 1.0
C A:TYR619 3.5 7.4 1.0
PG A:GTP1006 3.6 7.8 1.0
O3A A:GTP1006 3.6 7.8 1.0
CG A:ASP618 3.7 9.0 1.0
CG A:ASP760 3.8 6.6 1.0
O3B A:GTP1006 3.8 7.8 1.0
N A:TYR619 4.1 7.4 1.0
C5' A:GTP1006 4.1 7.8 1.0
OD1 A:ASP618 4.1 9.0 1.0
MG A:MG1003 4.3 11.2 1.0
O5' A:GTP1006 4.3 7.8 1.0
CA A:TYR619 4.3 7.4 1.0
O A:HOH1285 4.3 12.6 1.0
O2A A:GTP1006 4.4 7.8 1.0
O3G A:GTP1006 4.4 7.8 1.0
OD1 A:ASP760 4.4 6.6 1.0
N A:PRO620 4.4 9.1 1.0
N A:LYS621 4.5 8.1 1.0
C A:ASP618 4.5 9.0 1.0
CA A:PRO620 4.5 9.1 1.0
O1G A:GTP1006 4.5 7.8 1.0
O1B A:GTP1006 4.6 7.8 1.0
CB A:TYR619 4.7 7.4 1.0
CB A:ASP618 4.8 9.0 1.0
N A:CYS622 4.8 7.8 1.0
CE A:LYS798 4.9 12.6 1.0
C A:PRO620 4.9 9.1 1.0
CB A:CYS622 4.9 7.8 1.0
O A:ASP618 4.9 9.0 1.0
CB A:ASP760 5.0 6.6 1.0

Magnesium binding site 3 out of 3 in 7uob

Go back to Magnesium Binding Sites List in 7uob
Magnesium binding site 3 out of 3 in the Sars-Cov-2 Replication-Transcription Complex Bound to Gtp, in A Pre- Catalytic State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Sars-Cov-2 Replication-Transcription Complex Bound to Gtp, in A Pre- Catalytic State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1005

b:10.3
occ:1.00
O2A A:GTP1007 2.2 18.7 1.0
O1B A:GTP1007 2.4 18.7 1.0
ND2 A:ASN209 2.4 8.7 1.0
O3' A:GTP1007 2.9 18.7 1.0
OD2 A:ASP208 3.4 7.4 1.0
CG A:ASN209 3.5 8.7 1.0
PA A:GTP1007 3.6 18.7 1.0
OD2 A:ASP218 3.6 14.0 1.0
PB A:GTP1007 3.7 18.7 1.0
O A:ASP208 3.9 7.4 1.0
OD1 A:ASN209 3.9 8.7 1.0
C3' A:GTP1007 4.0 18.7 1.0
O3A A:GTP1007 4.1 18.7 1.0
C4' A:GTP1007 4.2 18.7 1.0
CE1 A:PHE35 4.3 11.4 1.0
CG A:ASP208 4.3 7.4 1.0
C A:ASP208 4.3 7.4 1.0
O2B A:GTP1007 4.4 18.7 1.0
CG A:ASP218 4.5 14.0 1.0
O5' A:GTP1007 4.5 18.7 1.0
CB A:ASP208 4.6 7.4 1.0
CA A:ASN209 4.6 8.7 1.0
N A:ASN209 4.6 8.7 1.0
CB A:ASN209 4.6 8.7 1.0
CD1 A:PHE35 4.6 11.4 1.0
C5' A:GTP1007 4.6 18.7 1.0
O1A A:GTP1007 4.6 18.7 1.0
O3B A:GTP1007 4.8 18.7 1.0
CE1 A:TYR217 4.9 11.3 1.0
CB A:ASP218 5.0 14.0 1.0

Reference:

B.F.Malone, S.A.Darst. Sars-Cov-2 Replication-Transcription Complex Bound to Gtp, in A Pre-Catalytic State To Be Published.
Page generated: Thu Oct 3 10:09:22 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy