Magnesium in PDB 7uog: Isoreticular, Interpenetrating Co-Crystal of Replication Initiator Protein REPE54 and Asymmetrical Expanded Duplex (31MER) Containing the Cognate REPE54 Sequence and An Additional G-C Rich Sequence.

The structure of Isoreticular, Interpenetrating Co-Crystal of Replication Initiator Protein REPE54 and Asymmetrical Expanded Duplex (31MER) Containing the Cognate REPE54 Sequence and An Additional G-C Rich Sequence., PDB code: 7uog was solved by A.R.Ward, C.D.Snow, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.77 / 2.63
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	74.901, 131.576, 135.926, 90, 90, 90
R / Rfree (%)	19.5 / 22.1

The binding sites of Magnesium atom in the Isoreticular, Interpenetrating Co-Crystal of Replication Initiator Protein REPE54 and Asymmetrical Expanded Duplex (31MER) Containing the Cognate REPE54 Sequence and An Additional G-C Rich Sequence. (pdb code 7uog). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Isoreticular, Interpenetrating Co-Crystal of Replication Initiator Protein REPE54 and Asymmetrical Expanded Duplex (31MER) Containing the Cognate REPE54 Sequence and An Additional G-C Rich Sequence., PDB code: 7uog:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Isoreticular, Interpenetrating Co-Crystal of Replication Initiator Protein REPE54 and Asymmetrical Expanded Duplex (31MER) Containing the Cognate REPE54 Sequence and An Additional G-C Rich Sequence.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Isoreticular, Interpenetrating Co-Crystal of Replication Initiator Protein REPE54 and Asymmetrical Expanded Duplex (31MER) Containing the Cognate REPE54 Sequence and An Additional G-C Rich Sequence. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg101 b:82.6 occ:1.00 O C:HOH415 2.2 69.5 1.0 O A:HOH209 2.3 61.0 1.0 O A:HOH208 2.3 80.6 1.0 OP1 A:DT12 2.5 73.0 1.0 O C:HOH413 2.6 61.3 1.0 O B:HOH204 2.7 64.6 1.0 P A:DT12 3.9 84.1 1.0 C5' A:DT12 4.0 68.8 1.0 O C:HOH410 4.2 50.5 1.0 O5' A:DT12 4.3 72.1 1.0 O3' A:DA11 4.4 82.5 1.0

Magnesium binding site 2 out of 5 in the Isoreticular, Interpenetrating Co-Crystal of Replication Initiator Protein REPE54 and Asymmetrical Expanded Duplex (31MER) Containing the Cognate REPE54 Sequence and An Additional G-C Rich Sequence.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Isoreticular, Interpenetrating Co-Crystal of Replication Initiator Protein REPE54 and Asymmetrical Expanded Duplex (31MER) Containing the Cognate REPE54 Sequence and An Additional G-C Rich Sequence. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg102 b:103.1 occ:1.00 O A:HOH207 2.3 87.3 1.0 O B:HOH201 2.4 90.0 1.0 O B:HOH202 2.5 87.9 1.0 O B:HOH209 2.6 98.7 1.0 O A:HOH206 2.7 96.6 1.0 O B:HOH207 4.4 78.0 1.0 O2 B:DC40 4.5 75.8 1.0 O4' A:DG6 4.6 83.0 1.0 O2 A:DT5 4.8 75.3 1.0 C4' A:DG6 4.8 84.4 1.0 C5' B:DA41 4.9 86.3 1.0 O4' B:DA41 5.0 83.4 1.0

Magnesium binding site 3 out of 5 in the Isoreticular, Interpenetrating Co-Crystal of Replication Initiator Protein REPE54 and Asymmetrical Expanded Duplex (31MER) Containing the Cognate REPE54 Sequence and An Additional G-C Rich Sequence.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Isoreticular, Interpenetrating Co-Crystal of Replication Initiator Protein REPE54 and Asymmetrical Expanded Duplex (31MER) Containing the Cognate REPE54 Sequence and An Additional G-C Rich Sequence. within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg101 b:108.7 occ:1.00 O B:HOH206 2.2 91.4 1.0 O6 B:DG42 3.1 91.4 1.0 N7 B:DG42 3.6 92.8 1.0 C6 B:DG42 3.7 92.3 1.0 C5 B:DG42 3.9 94.2 1.0 N4 A:DC1 4.4 78.7 1.0 N6 A:DA0 4.7 103.9 1.0 C8 B:DG42 4.7 92.9 1.0 N1 B:DG42 4.8 90.9 1.0

Magnesium binding site 4 out of 5 in the Isoreticular, Interpenetrating Co-Crystal of Replication Initiator Protein REPE54 and Asymmetrical Expanded Duplex (31MER) Containing the Cognate REPE54 Sequence and An Additional G-C Rich Sequence.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Isoreticular, Interpenetrating Co-Crystal of Replication Initiator Protein REPE54 and Asymmetrical Expanded Duplex (31MER) Containing the Cognate REPE54 Sequence and An Additional G-C Rich Sequence. within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg301 b:70.1 occ:1.00 O C:HOH402 2.0 79.3 1.0 OD1 C:ASP81 2.1 66.2 1.0 O A:HOH204 2.2 72.7 1.0 O A:HOH202 2.3 63.4 1.0 OE2 C:GLU77 2.3 83.6 1.0 O C:HOH403 2.5 70.5 1.0 O A:HOH201 2.5 69.4 1.0 CG C:ASP81 3.1 71.3 1.0 OD2 C:ASP81 3.4 73.3 1.0 CD C:GLU77 3.4 80.0 1.0 CG C:GLU77 4.0 80.8 1.0 OD2 C:ASP34 4.1 62.9 1.0 OP2 A:DT13 4.2 62.0 1.0 OP2 A:DG14 4.3 68.0 1.0 CB C:ASP81 4.5 73.5 1.0 OE1 C:GLU77 4.5 83.4 1.0 NH2 C:ARG33 4.6 64.5 1.0 N7 A:DG14 4.6 80.0 1.0 O C:GLU77 4.8 72.5 1.0 CA C:ASP81 4.8 73.8 1.0

Magnesium binding site 5 out of 5 in the Isoreticular, Interpenetrating Co-Crystal of Replication Initiator Protein REPE54 and Asymmetrical Expanded Duplex (31MER) Containing the Cognate REPE54 Sequence and An Additional G-C Rich Sequence.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Isoreticular, Interpenetrating Co-Crystal of Replication Initiator Protein REPE54 and Asymmetrical Expanded Duplex (31MER) Containing the Cognate REPE54 Sequence and An Additional G-C Rich Sequence. within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg302 b:82.8 occ:1.00 NE2 C:GLN234 3.2 80.7 1.0 O3' A:DC1 4.1 77.9 1.0 CB C:ARG233 4.2 101.5 1.0 C4' A:DC1 4.3 81.0 1.0 CD C:ARG233 4.3 110.3 1.0 C2' A:DC1 4.4 85.8 1.0 CD C:GLN234 4.4 85.0 1.0 NE C:ARG233 4.5 119.8 1.0 C3' A:DC1 4.6 79.6 1.0 NH1 C:ARG233 4.7 118.9 1.0 CZ C:ARG233 4.7 125.9 1.0 CG C:ARG233 4.7 106.4 1.0 O4' A:DC1 4.8 82.0 1.0 C1' A:DC1 4.9 85.8 1.0 CG C:GLN234 4.9 85.4 1.0

A.R.Ward, E.T.Shields, S.Dmytriw, A.Vajapayajula, C.D.Snow. Designed Crystalline Assemblies of Protein and Dna Enable Site-Specific Installation of A Guest Protein, Dna, and Small Molecule. To Be Published.