Magnesium in PDB 7upr: Human Mitochondrial Aaa Protein ATAD1 (with A Catalytic Dead Mutation) in Complex with A Peptide Substrate (Closed Conformation)

The binding sites of Magnesium atom in the Human Mitochondrial Aaa Protein ATAD1 (with A Catalytic Dead Mutation) in Complex with A Peptide Substrate (Closed Conformation) (pdb code 7upr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Human Mitochondrial Aaa Protein ATAD1 (with A Catalytic Dead Mutation) in Complex with A Peptide Substrate (Closed Conformation), PDB code: 7upr:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Human Mitochondrial Aaa Protein ATAD1 (with A Catalytic Dead Mutation) in Complex with A Peptide Substrate (Closed Conformation)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human Mitochondrial Aaa Protein ATAD1 (with A Catalytic Dead Mutation) in Complex with A Peptide Substrate (Closed Conformation) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg502 b:95.6 occ:1.00 O2B C:ATP501 2.1 98.1 1.0 OG1 C:THR140 2.4 96.0 1.0 O3G C:ATP501 2.6 98.1 1.0 OD1 C:ASP192 3.3 94.5 1.0 PB C:ATP501 3.5 98.1 1.0 OD2 C:ASP192 3.6 94.5 1.0 NH2 D:ARG250 3.8 89.4 1.0 O3B C:ATP501 3.8 98.1 1.0 PG C:ATP501 3.8 98.1 1.0 CB C:THR140 3.8 96.0 1.0 CG C:ASP192 3.9 94.5 1.0 O1A C:ATP501 4.2 98.1 1.0 CG2 C:THR140 4.3 96.0 1.0 O1B C:ATP501 4.4 98.1 1.0 O3A C:ATP501 4.5 98.1 1.0 N C:THR140 4.5 96.0 1.0 CA C:THR140 4.6 96.0 1.0 OE1 C:GLN193 4.7 91.1 1.0 O1G C:ATP501 4.7 98.1 1.0 PA C:ATP501 4.8 98.1 1.0 O D:ASP221 4.8 98.0 1.0 O2G C:ATP501 4.8 98.1 1.0 O D:MET217 4.9 90.0 1.0 O2A C:ATP501 5.0 98.1 1.0 CB C:LYS139 5.0 89.0 1.0

Magnesium binding site 2 out of 4 in the Human Mitochondrial Aaa Protein ATAD1 (with A Catalytic Dead Mutation) in Complex with A Peptide Substrate (Closed Conformation)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Human Mitochondrial Aaa Protein ATAD1 (with A Catalytic Dead Mutation) in Complex with A Peptide Substrate (Closed Conformation) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg502 b:101.7 occ:1.00 O2B B:ATP501 2.1 109.7 1.0 O3G B:ATP501 2.1 109.7 1.0 OG1 B:THR140 2.2 111.0 1.0 O3B B:ATP501 2.8 109.7 1.0 PG B:ATP501 2.9 109.7 1.0 PB B:ATP501 3.0 109.7 1.0 NH2 C:ARG250 3.5 95.1 1.0 O2G B:ATP501 3.5 109.7 1.0 CB B:THR140 3.6 111.0 1.0 OE1 B:GLN193 3.7 107.7 1.0 O3A B:ATP501 4.0 109.7 1.0 OD2 B:ASP192 4.0 111.6 1.0 OD1 B:ASP192 4.0 111.6 1.0 O1B B:ATP501 4.2 109.7 1.0 O1G B:ATP501 4.3 109.7 1.0 CG2 B:THR140 4.3 111.0 1.0 O1A B:ATP501 4.4 109.7 1.0 N B:THR140 4.4 111.0 1.0 CG B:ASP192 4.5 111.6 1.0 CA B:THR140 4.5 111.0 1.0 CZ C:ARG250 4.7 95.1 1.0 PA B:ATP501 4.9 109.7 1.0 CD B:GLN193 4.9 107.7 1.0 O C:ASP221 4.9 107.7 1.0

Magnesium binding site 3 out of 4 in the Human Mitochondrial Aaa Protein ATAD1 (with A Catalytic Dead Mutation) in Complex with A Peptide Substrate (Closed Conformation)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Human Mitochondrial Aaa Protein ATAD1 (with A Catalytic Dead Mutation) in Complex with A Peptide Substrate (Closed Conformation) within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg502 b:98.2 occ:1.00 O2B E:ATP501 2.1 104.1 1.0 O3G E:ATP501 2.2 104.1 1.0 OG1 E:THR140 2.4 99.1 1.0 PB E:ATP501 3.2 104.1 1.0 O3B E:ATP501 3.3 104.1 1.0 PG E:ATP501 3.4 104.1 1.0 CB E:THR140 3.8 99.1 1.0 O1A E:ATP501 3.8 104.1 1.0 NH2 F:ARG250 3.9 99.2 1.0 O3A E:ATP501 4.1 104.1 1.0 O F:ASP221 4.1 109.7 1.0 OD1 E:ASP192 4.1 101.3 1.0 O2G E:ATP501 4.3 104.1 1.0 CG2 E:THR140 4.3 99.1 1.0 OD2 E:ASP192 4.4 101.3 1.0 PA E:ATP501 4.4 104.1 1.0 O1B E:ATP501 4.4 104.1 1.0 O1G E:ATP501 4.5 104.1 1.0 OE1 E:GLN193 4.6 98.0 1.0 CG E:ASP192 4.7 101.3 1.0 NH1 F:ARG250 4.7 99.2 1.0 CA E:THR140 4.8 99.1 1.0 O2A E:ATP501 4.8 104.1 1.0 N E:THR140 4.8 99.1 1.0 CZ F:ARG250 4.8 99.2 1.0 OD1 F:ASP221 5.0 109.7 1.0

Magnesium binding site 4 out of 4 in the Human Mitochondrial Aaa Protein ATAD1 (with A Catalytic Dead Mutation) in Complex with A Peptide Substrate (Closed Conformation)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Human Mitochondrial Aaa Protein ATAD1 (with A Catalytic Dead Mutation) in Complex with A Peptide Substrate (Closed Conformation) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg502 b:100.5 occ:1.00 O2B D:ATP501 2.1 98.6 1.0 O3G D:ATP501 2.5 98.6 1.0 OG1 D:THR140 2.6 92.8 1.0 PB D:ATP501 3.4 98.6 1.0 OD2 D:ASP192 3.5 92.3 1.0 NH2 E:ARG250 3.5 89.7 1.0 OD1 D:ASP192 3.6 92.3 1.0 O3B D:ATP501 3.6 98.6 1.0 PG D:ATP501 3.7 98.6 1.0 CG D:ASP192 3.9 92.3 1.0 CB D:THR140 4.0 92.8 1.0 OE1 D:GLN193 4.1 92.3 1.0 O1A D:ATP501 4.1 98.6 1.0 O3A D:ATP501 4.3 98.6 1.0 O1B D:ATP501 4.4 98.6 1.0 CG2 D:THR140 4.5 92.8 1.0 O2G D:ATP501 4.5 98.6 1.0 PA D:ATP501 4.7 98.6 1.0 O E:MET217 4.7 87.9 1.0 N D:THR140 4.8 92.8 1.0 O E:ASP221 4.8 98.5 1.0 CA D:THR140 4.8 92.8 1.0 O1G D:ATP501 4.8 98.6 1.0 CZ E:ARG250 4.8 89.7 1.0 CA E:GLY222 5.0 104.6 1.0 O2A D:ATP501 5.0 98.6 1.0

L.Wang, H.Toutkoushian, V.Belyy, C.Y.Kokontis, P.Walter. Conserved Structural Elements Specialize ATAD1 As A Membrane Protein Extraction Machine. Elife V. 11 2022.
ISSN: ESSN 2050-084X
PubMed: 35550246
DOI: 10.7554/ELIFE.73941