Magnesium in PDB 7us2: Parl-Cleaved SKD3 (Human Clpb) E455Q Nucleotide Binding Domain Hexamer Bound to Atpgammas, Open Conformation

The binding sites of Magnesium atom in the Parl-Cleaved SKD3 (Human Clpb) E455Q Nucleotide Binding Domain Hexamer Bound to Atpgammas, Open Conformation (pdb code 7us2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Parl-Cleaved SKD3 (Human Clpb) E455Q Nucleotide Binding Domain Hexamer Bound to Atpgammas, Open Conformation, PDB code: 7us2:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Parl-Cleaved SKD3 (Human Clpb) E455Q Nucleotide Binding Domain Hexamer Bound to Atpgammas, Open Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Parl-Cleaved SKD3 (Human Clpb) E455Q Nucleotide Binding Domain Hexamer Bound to Atpgammas, Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:95.8 occ:1.00 O1B A:AGS801 2.0 102.2 1.0 OG1 A:THR388 2.0 90.8 1.0 O1A A:AGS801 2.2 101.9 1.0 S1G A:AGS801 2.4 100.6 1.0 CB A:THR388 2.7 86.4 1.0 PB A:AGS801 3.1 101.3 1.0 PA A:AGS801 3.1 103.3 1.0 PG A:AGS801 3.3 96.8 1.0 O3B A:AGS801 3.4 98.0 1.0 O3A A:AGS801 3.4 94.2 1.0 CG2 A:THR388 3.7 86.3 1.0 N A:THR388 3.8 80.4 1.0 O2A A:AGS801 3.8 102.1 1.0 CA A:THR388 3.9 82.2 1.0 OD1 A:ASP454 4.1 94.2 1.0 O3G A:AGS801 4.3 100.9 1.0 NH2 A:ARG620 4.3 116.1 1.0 OD2 A:ASP454 4.4 94.3 1.0 O2B A:AGS801 4.5 104.5 1.0 CG A:ASP454 4.6 94.5 1.0 O5' A:AGS801 4.6 106.2 1.0 O2G A:AGS801 4.7 97.0 1.0 NH2 A:ARG408 4.7 80.8 1.0 CG2 A:THR494 4.8 86.0 1.0 C A:THR388 5.0 83.3 1.0

Magnesium binding site 2 out of 6 in the Parl-Cleaved SKD3 (Human Clpb) E455Q Nucleotide Binding Domain Hexamer Bound to Atpgammas, Open Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Parl-Cleaved SKD3 (Human Clpb) E455Q Nucleotide Binding Domain Hexamer Bound to Atpgammas, Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg802 b:63.0 occ:1.00 OG1 B:THR388 2.0 45.6 1.0 S1G B:AGS801 2.4 73.1 1.0 OD1 B:ASP454 2.4 61.6 1.0 OD2 B:ASP454 2.8 59.1 1.0 CG B:ASP454 3.0 56.3 1.0 O1B B:AGS801 3.2 55.4 1.0 CB B:THR388 3.3 45.5 1.0 NE2 B:GLN455 3.4 56.8 1.0 CG2 B:THR494 3.5 56.6 1.0 CG2 B:THR388 3.7 49.5 1.0 PG B:AGS801 3.8 48.6 1.0 O1A B:AGS801 3.9 64.1 1.0 CD B:GLN455 4.1 56.2 1.0 CB B:THR494 4.2 45.9 1.0 O2G B:AGS801 4.3 52.9 1.0 CA B:THR388 4.3 44.2 1.0 O3B B:AGS801 4.3 40.9 1.0 N B:THR388 4.4 42.8 1.0 CG B:GLN455 4.4 55.1 1.0 OG1 B:THR494 4.4 44.1 1.0 CB B:ASP454 4.5 48.5 1.0 PB B:AGS801 4.6 51.2 1.0 NH2 A:ARG561 4.8 63.5 1.0 N B:GLN455 4.8 44.3 1.0 OE1 B:GLN455 4.9 55.6 1.0 OD2 A:ASP472 4.9 74.1 1.0 PA B:AGS801 5.0 51.0 1.0

Magnesium binding site 3 out of 6 in the Parl-Cleaved SKD3 (Human Clpb) E455Q Nucleotide Binding Domain Hexamer Bound to Atpgammas, Open Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Parl-Cleaved SKD3 (Human Clpb) E455Q Nucleotide Binding Domain Hexamer Bound to Atpgammas, Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg802 b:48.2 occ:1.00 OG1 C:THR388 2.0 41.7 1.0 S1G C:AGS801 2.4 65.4 1.0 O1B C:AGS801 2.5 44.0 1.0 CB C:THR388 3.2 37.9 1.0 O1A C:AGS801 3.2 59.1 1.0 OD1 C:ASP454 3.3 53.1 1.0 OD2 C:ASP454 3.5 55.1 1.0 PG C:AGS801 3.7 40.9 1.0 CG C:ASP454 3.8 51.6 1.0 CG2 C:THR388 3.8 43.1 1.0 PB C:AGS801 3.9 41.1 1.0 CG2 C:THR494 4.0 50.7 1.0 NH2 B:ARG561 4.0 47.5 1.0 O3B C:AGS801 4.0 34.1 1.0 NE2 C:GLN455 4.1 47.4 1.0 PA C:AGS801 4.3 48.6 1.0 N C:THR388 4.3 33.6 1.0 CA C:THR388 4.4 36.9 1.0 NH2 C:ARG620 4.4 49.7 1.0 OD2 B:ASP472 4.4 61.9 1.0 O3A C:AGS801 4.5 41.6 1.0 O3G C:AGS801 4.6 59.1 1.0 CD C:GLN455 4.6 46.1 1.0 CB C:THR494 4.8 43.9 1.0 CG C:GLN455 4.9 45.5 1.0 O2G C:AGS801 5.0 55.5 1.0

Magnesium binding site 4 out of 6 in the Parl-Cleaved SKD3 (Human Clpb) E455Q Nucleotide Binding Domain Hexamer Bound to Atpgammas, Open Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Parl-Cleaved SKD3 (Human Clpb) E455Q Nucleotide Binding Domain Hexamer Bound to Atpgammas, Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg802 b:45.1 occ:1.00 OG1 D:THR388 2.0 48.4 1.0 S1G D:AGS801 2.4 65.0 1.0 O1B D:AGS801 2.8 38.9 1.0 CB D:THR388 3.2 39.0 1.0 OD1 D:ASP454 3.2 52.2 1.0 OD2 D:ASP454 3.4 57.3 1.0 O1A D:AGS801 3.5 58.0 1.0 CG D:ASP454 3.7 56.2 1.0 NH2 C:ARG561 3.7 54.2 1.0 CG2 D:THR388 3.7 42.4 1.0 PG D:AGS801 3.8 29.3 1.0 NE2 D:GLN455 4.1 53.3 1.0 OD2 C:ASP472 4.1 60.9 1.0 CG2 D:THR494 4.2 49.8 1.0 PB D:AGS801 4.2 43.3 1.0 O3B D:AGS801 4.2 23.6 1.0 NH2 D:ARG620 4.3 50.5 1.0 CA D:THR388 4.4 31.6 1.0 N D:THR388 4.4 33.6 1.0 PA D:AGS801 4.5 34.2 1.0 O3G D:AGS801 4.6 52.0 1.0 O3A D:AGS801 4.7 33.8 1.0 CD D:GLN455 4.8 48.8 1.0 CG D:GLN455 4.8 47.2 1.0 CZ C:ARG561 4.9 38.6 1.0 NH2 D:ARG408 5.0 49.9 1.0 CB D:THR494 5.0 45.8 1.0

Magnesium binding site 5 out of 6 in the Parl-Cleaved SKD3 (Human Clpb) E455Q Nucleotide Binding Domain Hexamer Bound to Atpgammas, Open Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Parl-Cleaved SKD3 (Human Clpb) E455Q Nucleotide Binding Domain Hexamer Bound to Atpgammas, Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg802 b:47.4 occ:1.00 OG1 E:THR388 2.0 51.0 1.0 S1G E:AGS801 2.4 66.5 1.0 CB E:THR388 2.9 43.9 1.0 O1A E:AGS801 3.1 57.4 1.0 O1B E:AGS801 3.1 41.2 1.0 OD2 E:ASP454 3.3 60.2 1.0 CG2 E:THR388 3.5 47.3 1.0 OD1 E:ASP454 3.6 61.8 1.0 CG E:ASP454 3.9 61.6 1.0 NH2 D:ARG561 3.9 52.8 1.0 OD2 D:ASP472 3.9 63.6 1.0 PG E:AGS801 3.9 36.9 1.0 NE2 E:GLN455 4.1 55.6 1.0 PA E:AGS801 4.1 37.1 1.0 CA E:THR388 4.2 39.2 1.0 NH2 E:ARG620 4.3 49.5 1.0 PB E:AGS801 4.3 38.4 1.0 O3B E:AGS801 4.4 28.2 1.0 N E:THR388 4.4 37.3 1.0 O3A E:AGS801 4.6 33.6 1.0 O2A E:AGS801 4.7 43.3 1.0 NH2 E:ARG408 4.7 55.3 1.0 O3G E:AGS801 4.9 53.2 1.0 CG2 E:THR494 4.9 51.4 1.0 O2G E:AGS801 5.0 48.7 1.0

Magnesium binding site 6 out of 6 in the Parl-Cleaved SKD3 (Human Clpb) E455Q Nucleotide Binding Domain Hexamer Bound to Atpgammas, Open Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Parl-Cleaved SKD3 (Human Clpb) E455Q Nucleotide Binding Domain Hexamer Bound to Atpgammas, Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg802 b:38.9 occ:1.00 O1B F:AGS801 2.0 64.3 1.0 PG F:AGS801 2.6 56.5 1.0 O3G F:AGS801 2.6 68.5 1.0 S1G F:AGS801 2.7 77.6 1.0 OG1 F:THR388 2.7 61.1 1.0 O3B F:AGS801 2.7 46.5 1.0 O1A F:AGS801 2.8 70.1 1.0 PB F:AGS801 3.0 53.8 1.0 NE2 F:GLN455 3.7 72.9 1.0 CB F:THR388 3.7 61.9 1.0 O3A F:AGS801 3.8 44.2 1.0 PA F:AGS801 3.8 53.7 1.0 NH2 F:ARG620 3.9 57.6 1.0 NH2 E:ARG561 4.0 52.6 1.0 O2G F:AGS801 4.1 64.8 1.0 OD1 F:ASP454 4.1 76.6 1.0 OD2 F:ASP454 4.2 77.2 1.0 O2B F:AGS801 4.3 71.9 1.0 N F:THR388 4.4 58.2 1.0 CG F:ASP454 4.6 78.7 1.0 O2A F:AGS801 4.7 62.1 1.0 CA F:THR388 4.7 57.0 1.0 CG2 F:THR388 4.8 64.1 1.0 OD2 E:ASP472 4.8 65.9 1.0 NH1 E:ARG561 4.8 50.2 1.0 CD F:GLN455 4.8 77.7 1.0 CG2 F:THR494 4.9 71.9 1.0 CZ E:ARG561 4.9 48.5 1.0

A.Gupta, A.M.Lentzsch, A.S.Siegel, Z.Yu, C.Lu, U.S.Chio, Y.Cheng, S.-O.Shan. Parl-Cleaved SKD3 (Human Clpb) E455Q Nucleotide Binding Domain Hexamer Bound to Atpgammas, Open Conformation To Be Published.