Magnesium in PDB 7uz0: Antit-Trna Flip Ucca

The structure of Antit-Trna Flip Ucca, PDB code: 7uz0 was solved by I.R.Price, J.C.Grigg, A.Ke, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.61 / 3.03
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	46.168, 56.695, 268.908, 90, 90, 90
R / Rfree (%)	24.6 / 27.7

The structure of Antit-Trna Flip Ucca also contains other interesting chemical elements:

Strontium

(Sr)

19 atoms

The binding sites of Magnesium atom in the Antit-Trna Flip Ucca (pdb code 7uz0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Antit-Trna Flip Ucca, PDB code: 7uz0:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Antit-Trna Flip Ucca


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Antit-Trna Flip Ucca within 5.0Å range:

Magnesium binding site 2 out of 5 in the Antit-Trna Flip Ucca


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Antit-Trna Flip Ucca within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg121 b:42.8 occ:1.00 O4 A:U31 3.9 51.5 1.0 N7 A:G32 4.1 49.9 1.0 O6 A:G32 4.3 43.0 1.0 C5 A:U31 4.3 59.7 1.0 C4 A:U31 4.4 59.1 1.0 C5 A:G32 4.9 47.9 1.0

Magnesium binding site 3 out of 5 in the Antit-Trna Flip Ucca


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Antit-Trna Flip Ucca within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg122 b:56.4 occ:1.00 C2 A:A29 2.8 65.1 1.0 O2 A:U55 3.0 68.9 1.0 O2 A:C30 3.2 80.0 1.0 N3 A:A29 3.3 64.6 1.0 C1' A:C30 3.5 69.1 1.0 C2 A:C30 3.6 69.7 1.0 N1 A:C30 3.7 69.4 1.0 N1 A:A29 3.8 63.8 1.0 C2 A:U55 4.1 67.4 1.0 O4' A:C30 4.2 82.2 1.0 N3 A:C30 4.5 61.3 1.0 O2' A:C30 4.6 72.4 1.0 C2' A:C30 4.6 85.9 1.0 N3 A:U55 4.6 62.8 1.0 C4 A:A29 4.6 65.7 1.0 C6 A:C30 4.7 66.2 1.0 N3 A:A56 4.8 68.6 1.0 C1' A:A56 4.8 94.5 1.0 N2 A:G54 4.9 63.6 1.0 C4 A:A56 5.0 71.1 1.0

Magnesium binding site 4 out of 5 in the Antit-Trna Flip Ucca


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Antit-Trna Flip Ucca within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg123 b:96.5 occ:1.00 OP1 A:C51 3.5 90.8 1.0 OP1 A:C26 4.1 136.1 1.0 OP2 A:C52 4.3 69.7 1.0 OP1 A:C52 4.4 120.2 1.0 SR A:SR106 4.6 175.6 1.0 P A:C52 4.7 63.6 1.0 P A:C51 4.7 70.1 1.0 O3' A:C51 4.8 73.4 1.0 C5' A:C51 4.8 74.2 1.0

Magnesium binding site 5 out of 5 in the Antit-Trna Flip Ucca


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Antit-Trna Flip Ucca within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg124 b:96.2 occ:1.00 OP2 A:U55 3.8 89.6 1.0 OP1 A:U55 4.0 127.1 1.0 OP1 A:C24 4.3 140.8 1.0 P A:U55 4.4 91.8 1.0

J.C.Grigg, I.R.Price, A.Ke. Trna Fusion to Streamline Rna Structure Determination: Case Studies in Probing Aminoacyl-Trna Sensing Mechanisms By the T-Box Riboswitch To Be Published.