Magnesium in PDB 7v0r: Structure of Ternary Complex of Cgas with Dsdna and Bound 5 -Ppcpg(2 , 5 )Pa

Enzymatic activity of Structure of Ternary Complex of Cgas with Dsdna and Bound 5 -Ppcpg(2 , 5 )Pa

All present enzymatic activity of Structure of Ternary Complex of Cgas with Dsdna and Bound 5 -Ppcpg(2 , 5 )Pa:
2.7.7.86;

Protein crystallography data

The structure of Structure of Ternary Complex of Cgas with Dsdna and Bound 5 -Ppcpg(2 , 5 )Pa, PDB code: 7v0r was solved by S.Wu, S.B.Gabelli, J.Sohn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.61 / 2.51
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 78.112, 98.446, 142.598, 90, 90, 90
R / Rfree (%) 21.1 / 25

Other elements in 7v0r:

The structure of Structure of Ternary Complex of Cgas with Dsdna and Bound 5 -Ppcpg(2 , 5 )Pa also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Ternary Complex of Cgas with Dsdna and Bound 5 -Ppcpg(2 , 5 )Pa (pdb code 7v0r). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Structure of Ternary Complex of Cgas with Dsdna and Bound 5 -Ppcpg(2 , 5 )Pa, PDB code: 7v0r:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 7v0r

Go back to Magnesium Binding Sites List in 7v0r
Magnesium binding site 1 out of 4 in the Structure of Ternary Complex of Cgas with Dsdna and Bound 5 -Ppcpg(2 , 5 )Pa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Ternary Complex of Cgas with Dsdna and Bound 5 -Ppcpg(2 , 5 )Pa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg602

b:57.9
occ:1.00
 O9 A:OKX601 1.7 57.7 1.0
O5 A:OKX601 2.0 56.6 1.0
OE1 A:GLU211 2.1 62.0 1.0
O4 A:OKX601 2.2 62.7 1.0
O A:HOH713 2.2 51.0 1.0
OD2 A:ASP213 2.3 59.0 1.0
P3 A:OKX601 3.0 61.1 1.0
P2 A:OKX601 3.1 66.4 1.0
MG A:MG603 3.1 72.8 1.0
CG A:ASP213 3.3 52.2 1.0
O7 A:OKX601 3.3 62.8 1.0
CD A:GLU211 3.4 58.1 1.0
P1 A:OKX601 3.4 72.2 1.0
OD1 A:ASP213 3.5 60.1 1.0
C8 A:OKX601 3.8 70.2 1.0
O10 A:OKX601 4.0 61.0 1.0
O8 A:OKX601 4.0 58.1 1.0
OE2 A:GLU211 4.0 68.0 1.0
O3 A:OKX601 4.1 67.3 1.0
O A:HOH711 4.2 37.6 1.0
N A:SER199 4.2 38.3 1.0
OG A:SER199 4.3 44.1 1.0
CB A:SER199 4.4 40.8 1.0
O6 A:OKX601 4.5 67.6 1.0
CG A:GLU211 4.5 55.0 1.0
CB A:ASP213 4.6 49.2 1.0
O2 A:OKX601 4.6 83.6 1.0
CB A:GLU211 4.7 51.1 1.0
O A:GLU211 4.7 43.7 1.0
CA A:GLY198 4.8 37.1 1.0
C A:GLU211 5.0 44.7 1.0
CA A:SER199 5.0 38.7 1.0

Magnesium binding site 2 out of 4 in 7v0r

Go back to Magnesium Binding Sites List in 7v0r
Magnesium binding site 2 out of 4 in the Structure of Ternary Complex of Cgas with Dsdna and Bound 5 -Ppcpg(2 , 5 )Pa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Ternary Complex of Cgas with Dsdna and Bound 5 -Ppcpg(2 , 5 )Pa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg603

b:72.8
occ:1.00
 OE2 A:GLU211 2.1 68.0 1.0
OD1 A:ASP213 2.1 60.1 1.0
O18 A:OKX601 2.3 110.1 1.0
O4 A:OKX601 2.3 62.7 1.0
OE1 A:GLU211 2.5 62.0 1.0
CD A:GLU211 2.6 58.1 1.0
OD2 A:ASP307 2.7 60.5 1.0
CG A:ASP213 3.0 52.2 1.0
O17 A:OKX601 3.1 104.8 1.0
MG A:MG602 3.1 57.9 1.0
OD2 A:ASP213 3.3 59.0 1.0
P1 A:OKX601 3.3 72.2 1.0
C20 A:OKX601 3.4 121.8 1.0
C19 A:OKX601 3.5 119.7 1.0
O3 A:OKX601 3.7 67.3 1.0
CG A:ASP307 3.9 52.8 1.0
O2 A:OKX601 3.9 83.6 1.0
O9 A:OKX601 4.0 57.7 1.0
CG A:GLU211 4.1 55.0 1.0
CB A:ASP213 4.4 49.2 1.0
C12 A:OKX601 4.5 125.5 1.0
CB A:ASP307 4.5 50.9 1.0
O5 A:OKX601 4.6 56.6 1.0
OD1 A:ASP307 4.8 55.4 1.0
O A:HOH713 4.8 51.0 1.0
C8 A:OKX601 4.9 70.2 1.0

Magnesium binding site 3 out of 4 in 7v0r

Go back to Magnesium Binding Sites List in 7v0r
Magnesium binding site 3 out of 4 in the Structure of Ternary Complex of Cgas with Dsdna and Bound 5 -Ppcpg(2 , 5 )Pa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Ternary Complex of Cgas with Dsdna and Bound 5 -Ppcpg(2 , 5 )Pa within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg602

b:56.8
occ:1.00
 O5 C:OKX601 1.9 60.9 1.0
O9 C:OKX601 2.0 60.9 1.0
O4 C:OKX601 2.1 60.8 1.0
OD2 C:ASP213 2.2 64.3 1.0
O C:HOH708 2.3 51.9 1.0
OE1 C:GLU211 2.4 69.1 1.0
P2 C:OKX601 3.0 67.1 1.0
MG C:MG603 3.1 63.3 1.0
CG C:ASP213 3.2 57.6 1.0
P1 C:OKX601 3.2 67.3 1.0
P3 C:OKX601 3.3 61.2 1.0
O7 C:OKX601 3.4 63.4 1.0
OD1 C:ASP213 3.5 62.5 1.0
CD C:GLU211 3.6 65.9 1.0
C8 C:OKX601 3.7 68.6 1.0
O3 C:OKX601 3.8 66.8 1.0
O10 C:OKX601 4.2 58.5 1.0
N C:SER199 4.2 43.9 1.0
O C:HOH702 4.3 33.5 1.0
O8 C:OKX601 4.3 59.8 1.0
O6 C:OKX601 4.3 66.8 1.0
OG C:SER199 4.4 48.0 1.0
CB C:SER199 4.4 45.8 1.0
CG C:GLU211 4.5 60.9 1.0
OE2 C:GLU211 4.5 74.4 1.0
CB C:GLU211 4.6 56.9 1.0
O C:GLU211 4.6 47.8 1.0
O2 C:OKX601 4.6 75.1 1.0
CB C:ASP213 4.6 56.8 1.0
CA C:GLY198 4.7 42.5 1.0
C C:GLU211 4.8 52.0 1.0
C C:GLY198 4.9 42.8 1.0
CA C:SER199 5.0 44.3 1.0

Magnesium binding site 4 out of 4 in 7v0r

Go back to Magnesium Binding Sites List in 7v0r
Magnesium binding site 4 out of 4 in the Structure of Ternary Complex of Cgas with Dsdna and Bound 5 -Ppcpg(2 , 5 )Pa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Ternary Complex of Cgas with Dsdna and Bound 5 -Ppcpg(2 , 5 )Pa within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg603

b:63.3
occ:1.00
 OE1 C:GLU211 1.8 69.1 1.0
OD1 C:ASP213 2.1 62.5 1.0
OE2 C:GLU211 2.2 74.4 1.0
CD C:GLU211 2.3 65.9 1.0
OD2 C:ASP307 2.5 65.1 1.0
O4 C:OKX601 2.6 60.8 1.0
O18 C:OKX601 2.7 91.3 1.0
CG C:ASP213 3.0 57.6 1.0
MG C:MG602 3.1 56.8 1.0
OD2 C:ASP213 3.2 64.3 1.0
P1 C:OKX601 3.6 67.3 1.0
CG C:ASP307 3.7 56.2 1.0
O17 C:OKX601 3.7 91.8 1.0
O3 C:OKX601 3.7 66.8 1.0
CG C:GLU211 3.8 60.9 1.0
C20 C:OKX601 4.0 97.9 1.0
C19 C:OKX601 4.3 94.5 1.0
O2 C:OKX601 4.3 75.1 1.0
O9 C:OKX601 4.4 60.9 1.0
CB C:ASP213 4.4 56.8 1.0
CB C:ASP307 4.4 54.4 1.0
O C:PHE212 4.6 53.1 1.0
OD1 C:ASP307 4.6 59.2 1.0
O5 C:OKX601 4.6 60.9 1.0
CB C:GLU211 4.7 56.9 1.0
O C:HOH708 4.8 51.9 1.0
C C:PHE212 4.8 51.6 1.0
C12 C:OKX601 5.0 101.6 1.0
CA C:ASP213 5.0 55.5 1.0

Reference:

S.Wu, S.B.Gabelli, J.S.Sohn. Structure of Ternary Complex of Cgas with Dsdna and Bound 5 -Ppcpg(2 ,5 )Pa To Be Published.
Page generated: Thu Oct 3 10:18:38 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy