Magnesium in PDB 7v2d: Deactive State Complex I From Q10 Dataset

All present enzymatic activity of Deactive State Complex I From Q10 Dataset:
7.1.1.2;

The structure of Deactive State Complex I From Q10 Dataset also contains other interesting chemical elements:

Zinc	(Zn)	1 atom
Iron	(Fe)	28 atoms

The binding sites of Magnesium atom in the Deactive State Complex I From Q10 Dataset (pdb code 7v2d). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Deactive State Complex I From Q10 Dataset, PDB code: 7v2d:

Magnesium binding site 1 out of 1 in the Deactive State Complex I From Q10 Dataset


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Deactive State Complex I From Q10 Dataset within 5.0Å range: probe atom residue distance (Å) B Occ M:Mg804 b:25.9 occ:1.00 OE1 M:GLN133 2.5 34.4 1.0 O M:ILE223 2.6 34.4 1.0 O M:LEU231 2.9 31.4 1.0 O M:CYS226 3.0 35.8 1.0 O M:VAL228 3.1 30.1 1.0 CD M:GLN133 3.4 34.4 1.0 NE2 M:GLN133 3.7 34.4 1.0 C M:ILE223 3.8 34.4 1.0 CB M:CYS226 4.0 35.8 1.0 C M:CYS226 4.1 35.8 1.0 CE L:MET87 4.2 38.8 1.0 C M:LEU231 4.2 31.4 1.0 C M:VAL228 4.2 30.1 1.0 CG2 M:ILE223 4.4 34.4 1.0 CA M:ILE223 4.5 34.4 1.0 CA M:CYS226 4.5 35.8 1.0 SG M:CYS226 4.5 35.8 1.0 CG M:GLN133 4.8 34.4 1.0 CA M:GLY229 4.8 33.1 1.0 N M:CYS226 4.8 35.8 1.0 CG2 M:THR232 4.8 36.3 1.0 O M:ASP224 4.9 40.9 1.0 N M:ASP224 4.9 40.9 1.0 N M:VAL228 4.9 30.1 1.0 N M:GLY229 4.9 33.1 1.0 CA M:THR232 5.0 36.3 1.0

J.Gu, T.Liu, R.Guo, L.Zhang, M.Yang. The Coupling Mechanism of Mammalian Mitochondrial Complex I. Nat.Struct.Mol.Biol. V. 29 172 2022.
ISSN: ESSN 1545-9985
PubMed: 35145322
DOI: 10.1038/S41594-022-00722-W