Magnesium in PDB 7vdv: The Overall Structure of Human Chromatin Remodeling Pbaf-Nucleosome Complex

The structure of The Overall Structure of Human Chromatin Remodeling Pbaf-Nucleosome Complex also contains other interesting chemical elements:

Fluorine

(F)

3 atoms

The binding sites of Magnesium atom in the The Overall Structure of Human Chromatin Remodeling Pbaf-Nucleosome Complex (pdb code 7vdv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Overall Structure of Human Chromatin Remodeling Pbaf-Nucleosome Complex, PDB code: 7vdv:

Magnesium binding site 1 out of 1 in the The Overall Structure of Human Chromatin Remodeling Pbaf-Nucleosome Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Overall Structure of Human Chromatin Remodeling Pbaf-Nucleosome Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1702 b:188.1 occ:1.00 O2B A:ADP1703 1.9 158.3 1.0 O1A A:ADP1703 1.9 158.3 1.0 F2 A:BEF1701 2.1 158.7 1.0 PA A:ADP1703 2.2 158.3 1.0 O2A A:ADP1703 2.5 158.3 1.0 O3A A:ADP1703 2.6 158.3 1.0 PB A:ADP1703 2.8 158.3 1.0 CB A:LYS785 2.8 152.0 1.0 N A:THR786 3.0 154.7 1.0 OG1 A:THR786 3.2 154.7 1.0 BE A:BEF1701 3.2 158.7 1.0 CA A:LYS785 3.5 152.0 1.0 C A:LYS785 3.5 152.0 1.0 N A:LYS785 3.6 152.0 1.0 F3 A:BEF1701 3.7 158.7 1.0 O1B A:ADP1703 3.7 158.3 1.0 O5' A:ADP1703 3.8 158.3 1.0 O3B A:ADP1703 3.9 158.3 1.0 CE A:LYS785 3.9 152.0 1.0 CA A:THR786 4.0 154.7 1.0 NH1 A:ARG1192 4.0 145.1 1.0 CB A:THR786 4.1 154.7 1.0 CG A:LYS785 4.1 152.0 1.0 NZ A:LYS785 4.4 152.0 1.0 CD A:LYS785 4.5 152.0 1.0 O A:LYS785 4.5 152.0 1.0 C5' A:ADP1703 4.6 158.3 1.0 C A:GLY784 4.7 163.3 1.0 F1 A:BEF1701 4.8 158.7 1.0 CD2 A:LEU909 4.9 115.5 1.0

J.J.Yuan, K.J.Chen, W.B.Zhang, Z.C.Chen. Structure of Human Chromatin-Remodelling Pbaf Complex Bound to A Nucleosome. Nature V. 605 166 2022.
ISSN: ESSN 1476-4687
PubMed: 35477757
DOI: 10.1038/S41586-022-04658-5