Magnesium in PDB 7vfp: Cytochrome C-Type Biogenesis Protein Ccmabcd From E. Coli in Complex with Heme and Single Atp

Enzymatic activity of Cytochrome C-Type Biogenesis Protein Ccmabcd From E. Coli in Complex with Heme and Single Atp

All present enzymatic activity of Cytochrome C-Type Biogenesis Protein Ccmabcd From E. Coli in Complex with Heme and Single Atp:
7.6.2.5;

Other elements in 7vfp:

The structure of Cytochrome C-Type Biogenesis Protein Ccmabcd From E. Coli in Complex with Heme and Single Atp also contains other interesting chemical elements:

Iron

(Fe)

1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cytochrome C-Type Biogenesis Protein Ccmabcd From E. Coli in Complex with Heme and Single Atp (pdb code 7vfp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cytochrome C-Type Biogenesis Protein Ccmabcd From E. Coli in Complex with Heme and Single Atp, PDB code: 7vfp:

Magnesium binding site 1 out of 1 in 7vfp

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Magnesium Binding Sites List in 7vfp

Magnesium binding site 1 out of 1 in the Cytochrome C-Type Biogenesis Protein Ccmabcd From E. Coli in Complex with Heme and Single Atp

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cytochrome C-Type Biogenesis Protein Ccmabcd From E. Coli in Complex with Heme and Single Atp within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
E:Mg300 b:163.1 occ:1.00	O2B	E:ATP301	1.9	172.2	1.0
	OG1	E:THR41	2.0	140.3	1.0
	O	E:HOH402	2.0	145.6	1.0
	O	E:HOH401	2.1	167.0	1.0
	O3G	E:ATP301	2.1	172.2	1.0
	NE2	E:HIS81	2.1	133.5	1.0
	CD2	E:HIS81	2.8	133.5	1.0
	PB	E:ATP301	3.1	172.2	1.0
	CB	E:THR41	3.1	140.3	1.0
	PG	E:ATP301	3.2	172.2	1.0
	CE1	E:HIS81	3.3	133.5	1.0
	O3B	E:ATP301	3.5	172.2	1.0
	O1G	E:ATP301	3.5	172.2	1.0
	O1B	E:ATP301	3.8	172.2	1.0
	CG2	E:THR41	3.8	140.3	1.0
	CG	E:HIS81	4.1	133.5	1.0
	ND1	E:HIS81	4.3	133.5	1.0
	CA	E:THR41	4.3	140.3	1.0
	O3A	E:ATP301	4.4	172.2	1.0
	OD2	E:ASP151	4.5	123.1	1.0
	N	E:THR41	4.5	140.3	1.0
	O2G	E:ATP301	4.5	172.2	1.0
	O2A	E:ATP301	4.6	172.2	1.0
	PA	E:ATP301	4.8	172.2	1.0
	O1A	E:ATP301	4.9	172.2	1.0
	OD1	E:ASP151	4.9	123.1	1.0
	CG	E:LYS40	5.0	139.4	1.0

Reference:

J.Li, W.Zheng, M.Gu, L.Han, Y.Luo, K.Yu, M.Sun, Y.Zong, X.Ma, B.Liu, E.P.Lowder, D.L.Mendez, R.G.Kranz, K.Zhang, J.Zhu. Structures of the Ccmabcd Heme Release Complex at Multiple States. Nat Commun V. 13 6422 2022.
ISSN: ESSN 2041-1723
PubMed: 36307425
DOI: 10.1038/S41467-022-34136-5

Page generated: Thu Oct 3 10:27:42 2024

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