Magnesium in PDB 7vgf: Cryo-Em Structure of Amp-Pnp Bound Human ABCB7

The binding sites of Magnesium atom in the Cryo-Em Structure of Amp-Pnp Bound Human ABCB7 (pdb code 7vgf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Amp-Pnp Bound Human ABCB7, PDB code: 7vgf:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Amp-Pnp Bound Human ABCB7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Amp-Pnp Bound Human ABCB7 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg902 b:115.5 occ:1.00 OG A:SER512 2.1 114.6 1.0 O1G A:ANP901 2.4 128.8 1.0 CD A:GLN553 2.4 113.1 1.0 NE2 A:GLN553 2.4 113.1 1.0 OE1 A:GLN553 2.6 113.1 1.0 CG A:GLN553 3.3 113.1 1.0 CB A:SER512 3.5 114.6 1.0 PG A:ANP901 3.6 128.8 1.0 OD2 A:ASP633 3.8 118.7 1.0 O2A A:ANP901 3.8 128.8 1.0 O2G A:ANP901 4.0 128.8 1.0 OD1 A:ASP633 4.0 118.7 1.0 CB A:GLN553 4.1 113.1 1.0 O3G A:ANP901 4.2 128.8 1.0 N A:SER512 4.3 114.6 1.0 CA A:SER512 4.3 114.6 1.0 CG A:ASP633 4.3 118.7 1.0 OG1 A:THR636 4.4 137.6 1.0 O3A A:ANP901 4.8 128.8 1.0 PA A:ANP901 4.8 128.8 1.0 N3B A:ANP901 5.0 128.8 1.0 CB A:LYS511 5.0 120.2 1.0 C A:LYS511 5.0 120.2 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Amp-Pnp Bound Human ABCB7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Amp-Pnp Bound Human ABCB7 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg902 b:117.6 occ:1.00 OG B:SER512 2.1 113.9 1.0 O1G B:ANP901 2.1 128.0 1.0 CD B:GLN553 2.4 113.0 1.0 NE2 B:GLN553 2.4 113.0 1.0 OE1 B:GLN553 2.6 113.0 1.0 CG B:GLN553 3.3 113.0 1.0 PG B:ANP901 3.5 128.0 1.0 CB B:SER512 3.5 113.9 1.0 O2A B:ANP901 3.6 128.0 1.0 O2G B:ANP901 3.8 128.0 1.0 OD2 B:ASP633 3.8 118.1 1.0 OD1 B:ASP633 4.0 118.1 1.0 CB B:GLN553 4.1 113.0 1.0 N B:SER512 4.3 113.9 1.0 O3G B:ANP901 4.3 128.0 1.0 CA B:SER512 4.3 113.9 1.0 CG B:ASP633 4.3 118.1 1.0 OG1 B:THR636 4.4 137.2 1.0 O1B B:ANP901 4.6 128.0 1.0 N3B B:ANP901 4.6 128.0 1.0 PA B:ANP901 4.7 128.0 1.0 O3A B:ANP901 4.9 128.0 1.0 O1A B:ANP901 4.9 128.0 1.0 PB B:ANP901 5.0 128.0 1.0 CB B:LYS511 5.0 119.6 1.0 C B:LYS511 5.0 119.6 1.0

Q.Yan, Y.Shen, X.Yang. Cryo-Em Structure of Amp-Pnp-Bound Human Mitochondrial Atp-Binding Cassette Transporter ABCB7. J.Struct.Biol. V. 214 07832 2022.
ISSN: ESSN 1095-8657
DOI: 10.1016/J.JSB.2022.107832