Magnesium in PDB 7vpi: Cryo-Em Structure of the Human ATP13A2 (E1-Atp State)

The binding sites of Magnesium atom in the Cryo-Em Structure of the Human ATP13A2 (E1-Atp State) (pdb code 7vpi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of the Human ATP13A2 (E1-Atp State), PDB code: 7vpi:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of the Human ATP13A2 (E1-Atp State)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Human ATP13A2 (E1-Atp State) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1202 b:57.2 occ:1.00 O A:THR515 2.5 62.2 1.0 O1G A:ACP1201 2.8 61.6 1.0 OD2 A:ASP513 2.9 58.9 1.0 OD1 A:ASP878 3.4 73.1 1.0 OG1 A:THR515 3.4 62.6 1.0 CG A:ASP513 3.7 58.6 1.0 OD1 A:ASP513 3.7 59.4 1.0 C A:THR515 3.7 62.6 1.0 CG A:ASP878 4.1 73.5 1.0 PG A:ACP1201 4.1 61.5 1.0 OD2 A:ASP878 4.1 74.2 1.0 OD1 A:ASN881 4.1 80.7 1.0 O2G A:ACP1201 4.2 61.7 1.0 CA A:GLY879 4.3 76.6 1.0 N A:GLY879 4.5 75.1 1.0 CA A:THR515 4.5 62.0 1.0 CB A:THR515 4.5 62.5 1.0 OD1 A:ASP882 4.6 78.0 1.0 ND2 A:ASN881 4.7 80.5 1.0 N A:GLY516 4.7 63.4 1.0 N A:THR515 4.7 61.4 1.0 C A:ASP878 4.7 73.2 1.0 O2B A:ACP1201 4.8 61.3 1.0 CG A:ASN881 4.8 80.4 1.0 CA A:GLY516 4.9 63.6 1.0

A.Tomita, T.Daiho, T.Kusakizako, K.Yamashita, S.Ogasawara, T.Murata, T.Nishizawa, O.Nureki. Cryo-Em Reveals Mechanistic Insights Into Lipid-Facilitated Polyamine Export By Human ATP13A2. Mol.Cell V. 81 4799 2021.
ISSN: ISSN 1097-2765
PubMed: 34798056
DOI: 10.1016/J.MOLCEL.2021.11.001