Magnesium in PDB 7vpj: Cryo-Em Structure of the Human ATP13A2 (E1P-Adp State)

The structure of Cryo-Em Structure of the Human ATP13A2 (E1P-Adp State) also contains other interesting chemical elements:

Fluorine	(F)	4 atoms
Aluminium	(Al)	1 atom

The binding sites of Magnesium atom in the Cryo-Em Structure of the Human ATP13A2 (E1P-Adp State) (pdb code 7vpj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of the Human ATP13A2 (E1P-Adp State), PDB code: 7vpj:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of the Human ATP13A2 (E1P-Adp State)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Human ATP13A2 (E1P-Adp State) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1201 b:139.2 occ:1.00 F1 A:ALF1204 3.1 88.2 1.0 F3 A:ALF1204 3.1 88.5 1.0 OD1 A:ASN881 3.4 94.6 1.0 OD2 A:ASP513 3.5 69.4 1.0 O A:THR515 3.6 73.8 1.0 CA A:GLY879 3.6 85.0 1.0 OD1 A:ASP878 4.0 82.2 1.0 N A:GLY879 4.1 83.2 1.0 AL A:ALF1204 4.2 88.2 1.0 OG1 A:THR515 4.2 74.4 1.0 OD1 A:ASP882 4.3 96.5 1.0 CG A:ASN881 4.4 94.7 1.0 CG A:ASP513 4.5 67.4 1.0 OD2 A:ASP878 4.5 83.7 1.0 CG A:ASP878 4.5 82.5 1.0 C A:ASP878 4.5 81.0 1.0 ND2 A:ASN881 4.6 93.9 1.0 OD1 A:ASP513 4.7 69.5 1.0 O A:ASP878 4.7 80.2 1.0 C A:THR515 4.8 74.8 1.0 O2B A:ADP1202 4.8 80.6 1.0 C A:GLY879 4.8 86.7 1.0 OE2 A:GLU348 4.9 273.2 1.0 O3B A:ADP1202 5.0 82.7 1.0

A.Tomita, T.Daiho, T.Kusakizako, K.Yamashita, S.Ogasawara, T.Murata, T.Nishizawa, O.Nureki. Cryo-Em Reveals Mechanistic Insights Into Lipid-Facilitated Polyamine Export By Human ATP13A2. Mol.Cell V. 81 4799 2021.
ISSN: ISSN 1097-2765
PubMed: 34798056
DOI: 10.1016/J.MOLCEL.2021.11.001