Magnesium in PDB 7vpz: Cryo-Em Structure of Streptomyces Coelicolor Transcription Initial Complex with One Zur Dimer

Enzymatic activity of Cryo-Em Structure of Streptomyces Coelicolor Transcription Initial Complex with One Zur Dimer

All present enzymatic activity of Cryo-Em Structure of Streptomyces Coelicolor Transcription Initial Complex with One Zur Dimer:
2.7.7.6;

Other elements in 7vpz:

The structure of Cryo-Em Structure of Streptomyces Coelicolor Transcription Initial Complex with One Zur Dimer also contains other interesting chemical elements:

Zinc (Zn) 8 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Streptomyces Coelicolor Transcription Initial Complex with One Zur Dimer (pdb code 7vpz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Streptomyces Coelicolor Transcription Initial Complex with One Zur Dimer, PDB code: 7vpz:

Magnesium binding site 1 out of 1 in 7vpz

Go back to Magnesium Binding Sites List in 7vpz
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Streptomyces Coelicolor Transcription Initial Complex with One Zur Dimer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Streptomyces Coelicolor Transcription Initial Complex with One Zur Dimer within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1401

b:62.7
occ:1.00
 O3' Q:G5 2.0 74.1 1.0
C4' Q:G5 2.1 74.1 1.0
C5' Q:G5 2.4 74.1 1.0
C3' Q:G5 2.5 74.1 1.0
OD1 D:ASP539 2.8 73.5 1.0
OD2 D:ASP539 3.0 73.5 1.0
OD1 D:ASP535 3.1 74.5 1.0
CG D:ASP539 3.2 73.5 1.0
OD2 D:ASP535 3.5 74.5 1.0
O4' Q:G5 3.5 74.1 1.0
O5' Q:G5 3.7 74.1 1.0
C2' Q:G5 3.7 74.1 1.0
CG D:ASP535 3.7 74.5 1.0
O D:GLY538 3.9 69.3 1.0
O2' Q:G5 4.0 74.1 1.0
OP1 Q:G5 4.0 74.1 1.0
NH2 D:ARG500 4.0 80.3 1.0
C1' Q:G5 4.3 74.1 1.0
P Q:G5 4.5 74.1 1.0
CB D:ASP539 4.7 73.5 1.0
C D:GLY538 4.9 69.3 1.0

Reference:

X.Yang, Y.Wang, G.Liu, Z.Deng, S.Lin, J.Zheng. Structural Basis of Streptomyces Transcription Activation By Zinc Uptake Regulator. Nucleic Acids Res. V. 50 8363 2022.
ISSN: ESSN 1362-4962
PubMed: 35871291
DOI: 10.1093/NAR/GKAC627
Page generated: Thu Oct 3 10:37:25 2024

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